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BioLiP
Download all results in tab-seperated text for 2486 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2401 8b8f:A (1.0) BS04 GAL ? N/A B0D650 36754262
    2402 8b8f:A (1.0) BS05 GAL ? N/A B0D650 36754262
    2403 8b8f:A (1.0) BS06 GAL ? N/A B0D650 36754262
    2404 8b97:A (0.97) BS01 GAL ? N/A B0D650 36754262
    2405 8b97:A (0.97) BS02 GAL ? N/A B0D650 36754262
    2406 8b97:A (0.97) BS03 GAL ? N/A B0D650 36754262
    2407 8b97:A (0.97) BS04 GAL ? N/A B0D650 36754262
    2408 8b97:A (0.97) BS05 GAL ? N/A B0D650 36754262
    2409 8bjz:A (1.89) BS01 GAL N/A N/A N/A N/A
    2410 8blw:B (3.22) BS01 GAL ? N/A Q8A7N4 37543597
    2411 8bso:C (1.92) BS01 GAL N/A N/A N/A N/A
    2412 8ctu:B (1.65) BS01 GAL ? GO:0005267 ... Q81HW2 N/A
    2413 8d0q:A (1.39) BS01 GAL 2.4.1.152 GO:0006486 ... Q9Y231 37202521
    2414 8d0q:A (1.39) BS02 GAL 2.4.1.152 GO:0006486 ... Q9Y231 37202521
    2415 8d0r:A (1.4) BS01 GAL 2.4.1.152 GO:0006486 ... Q9Y231 37202521
    2416 8d0s:A (1.37) BS01 GAL 2.4.1.152 GO:0006486 ... Q9Y231 37202521
    2417 8d0w:A (1.332) BS01 GAL 2.4.1.152 GO:0006486 ... Q9Y231 37202521
    2418 8d0x:A (1.33) BS01 GAL 2.4.1.152 GO:0006486 ... Q9Y231 37202521
    2419 8din:A (2.5) BS02 GAL ? N/A P01857 36814926
    2420 8din:B (2.5) BS02 GAL ? N/A P01857 36814926
    2421 8dir:A (2.3) BS02 GAL ? N/A P01857 36814926
    2422 8dir:B (2.3) BS02 GAL ? N/A P01857 36814926
    2423 8dj7:A (2.39) BS01 GAL ? N/A P01857 36814926
    2424 8e0v:A (2.3) BS02 GAL 2.5.1.54 GO:0003849 ... P0AB91 36197914
    2425 8e0v:A (2.3) BS03 GAL 2.5.1.54 GO:0003849 ... P0AB91 36197914
    2426 8e0v:B (2.3) BS01 GAL 2.5.1.54 GO:0003849 ... P0AB91 36197914
    2427 8e0v:C (2.3) BS03 GAL 2.5.1.54 GO:0003849 ... P0AB91 36197914
    2428 8e0v:D (2.3) BS01 GAL 2.5.1.54 GO:0003849 ... P0AB91 36197914
    2429 8ew1:A (1.8) BS01 GAL ? GO:0004553 ... B5CYA6 N/A
    2430 8ew1:B (1.8) BS01 GAL ? GO:0004553 ... B5CYA6 N/A
    2431 8ew1:C (1.8) BS01 GAL ? GO:0004553 ... B5CYA6 N/A
    2432 8faw:A (2.16) BS01 GAL N/A N/A A0A6M4ZXR4 38890325
    2433 8g0m:B (2.25) BS02 GAL N/A N/A N/A 37598178
    2434 8hvb:A (1.6) BS01 GAL ? GO:0004553 ... Q9Z4I7 N/A
    2435 8hvc:A (1.58) BS01 GAL ? GO:0004553 ... Q9Z4I7 N/A
    2436 8hvd:A (1.41) BS01 GAL ? GO:0004553 ... Q9Z4I7 N/A
    2437 8ibt:A (2.2) BS01 GAL 3.2.1.23 GO:0004565 ... Q93GI5 38046823
    2438 8ibt:B (2.2) BS01 GAL 3.2.1.23 GO:0004565 ... Q93GI5 38046823
    2439 8ibt:B (2.2) BS02 GAL 3.2.1.23 GO:0004565 ... Q93GI5 38046823
    2440 8j51:A (2.15) BS02 GAL 3.2.1.22 GO:0004553 ... A0A0E9MUN5 37438884
    2441 8j51:B (2.15) BS02 GAL 3.2.1.22 GO:0004553 ... A0A0E9MUN5 37438884
    2442 8j52:A (1.9) BS02 GAL 3.2.1.22 GO:0004553 ... A0A0E9MUN5 37438884
    2443 8j52:B (1.9) BS02 GAL 3.2.1.22 GO:0004553 ... A0A0E9MUN5 37438884
    2444 8kd0:A (1.675) BS01 GAL N/A GO:0015768 ... Q4FMK2 39261732
    2445 8oxs:C (1.6) BS02 GAL N/A N/A P01556 N/A
    2446 8oxs:D (1.6) BS02 GAL N/A N/A P01556 N/A
    2447 8oxs:E (1.6) BS02 GAL N/A N/A P01556 N/A
    2448 8oxs:F (1.6) BS01 GAL N/A N/A P01556 N/A
    2449 8oxs:G (1.6) BS01 GAL N/A N/A P01556 N/A
    2450 8oxs:H (1.6) BS01 GAL N/A N/A P01556 N/A
    2451 8oxs:I (1.6) BS01 GAL N/A N/A P01556 N/A
    2452 8oxs:K (1.6) BS02 GAL N/A N/A P01556 N/A
    2453 8oxs:L (1.6) BS02 GAL N/A N/A P01556 N/A
    2454 8ppn:A (1.8) BS01 GAL ? GO:0030246 ... P17931 37658813
    2455 8pxv:B (2.5) BS01 GAL 3.2.1.52 GO:0004553 ... B2UN02 38684911
    2456 8pxv:C (2.5) BS01 GAL 3.2.1.52 GO:0004553 ... B2UN02 38684911
    2457 8qre:A (2.3) BS01 GAL 2.4.2.- GO:0005515 ... P01555 38359344
    2458 8qre:D (2.3) BS01 GAL ? GO:0005515 ... P01556 38359344
    2459 8qre:E (2.3) BS01 GAL ? GO:0005515 ... P01556 38359344
    2460 8qre:F (2.3) BS01 GAL ? GO:0005515 ... P01556 38359344
    2461 8qre:G (2.3) BS01 GAL ? GO:0005515 ... P01556 38359344
    2462 8qre:H (2.3) BS01 GAL ? GO:0005515 ... P01556 38359344
    2463 8qre:I (2.3) BS01 GAL ? GO:0005515 ... P01556 38359344
    2464 8qre:J (2.3) BS01 GAL ? GO:0005515 ... P01556 38359344
    2465 8qre:K (2.3) BS01 GAL ? GO:0005515 ... P01556 38359344
    2466 8qre:L (2.3) BS01 GAL ? GO:0005515 ... P01556 38359344
    2467 8r8a:A (1.317) BS01 GAL ? N/A A0A1S4E5V9 38410776
    2468 8rzk:A (2.29) BS02 GAL N/A N/A G0L004 39022920
    2469 8rzk:B (2.29) BS02 GAL N/A N/A G0L004 39022920
    2470 8rzk:C (2.29) BS02 GAL N/A N/A G0L004 39022920
    2471 8rzk:D (2.29) BS02 GAL N/A N/A G0L004 39022920
    2472 8t27:A (1.41) BS02 GAL 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    2473 8t27:A (1.41) BS03 GAL 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    2474 8t27:A (1.41) BS04 GAL 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    2475 8um0:A (2.46) BS01 GAL N/A N/A B1V1R3 39251137
    2476 8w4l:A (3.1) BS01 GAL N/A N/A P0DOX5 38938812
    2477 8w4l:B (3.1) BS02 GAL N/A N/A P0DOX5 38938812
    2478 8w4m:A (2.18) BS02 GAL N/A N/A P0DOX5 38938812
    2479 8y6c:A (1.47) BS04 GAL N/A N/A Q5F4T5 N/A
    2480 8zck:A (2.0) BS01 GAL ? N/A P0DOX5 N/A
    2481 8zcl:A (2.6) BS01 GAL ? N/A P0DOX5 N/A
    2482 8zcm:A (2.64) BS01 GAL ? N/A P0DOX5 N/A
    2483 9abp:A (1.97) BS02 GAL ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.01uM
    2484 9b36:A (4.29) BS01 GAL ? N/A P42260 38778115
    2485 9iie:A (3.14) BS02 GAL N/A N/A P0DOX5 N/A
    2486 9int:A (1.56) BS01 GAL N/A GO:0004553 ... A0A1B1Y771 39214858
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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