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BioLiP
Download all results in tab-seperated text for 2486 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1601 5cq0:E (1.9) BS01 GAL ? GO:0005198 ... P49302 26474293
    1602 5d4q:A (2.39) BS02 GAL ? N/A P01857 26850169
    1603 5d4q:B (2.39) BS02 GAL ? N/A P01857 26850169
    1604 5d61:A (1.6) BS02 GAL ? GO:0046872 ... Q8X123 26901797
    1605 5d62:A (1.7) BS02 GAL ? GO:0046872 ... Q8X123 26901797
    1606 5d63:A (1.65) BS02 GAL ? GO:0046872 ... Q8X123 26901797
    1607 5d6d:A (3.13) BS02 GAL ? N/A P01857 26850169
    1608 5dg1:C (3.2) BS01 GAL ? GO:0005515 ... P05162 27563008
    1609 5dg1:D (3.2) BS01 GAL ? GO:0005515 ... P05162 27563008
    1610 5dg1:I (3.2) BS01 GAL ? GO:0005515 ... P05162 27563008
    1611 5dg2:B (1.612) BS02 GAL ? GO:0005515 ... P05162 27563008
    1612 5di8:A (1.9) BS03 GAL ? N/A P01857 26996964
    1613 5di8:B (1.9) BS02 GAL ? N/A P01857 26996964
    1614 5dj0:A (2.28) BS03 GAL ? N/A P01857 26996964
    1615 5dj0:B (2.28) BS01 GAL ? N/A P01857 26996964
    1616 5dj2:A (2.56) BS03 GAL ? N/A P01857 26996964
    1617 5dj2:B (2.56) BS01 GAL ? N/A P01857 26996964
    1618 5dj6:A (2.0) BS02 GAL ? N/A P01857 26996964
    1619 5dj6:B (2.0) BS01 GAL ? N/A P01857 26996964
    1620 5dj8:A (2.4) BS03 GAL ? N/A P01857 26996964
    1621 5dj8:B (2.4) BS01 GAL ? N/A P01857 26996964
    1622 5dja:A (2.9) BS03 GAL ? N/A P01857 26996964
    1623 5dja:B (2.9) BS02 GAL ? N/A P01857 26996964
    1624 5djc:A (2.1) BS03 GAL ? N/A P01857 26996964
    1625 5djc:B (2.1) BS02 GAL ? N/A P01857 26996964
    1626 5djc:D (2.1) BS03 GAL ? N/A P01857 26996964
    1627 5djc:E (2.1) BS01 GAL ? N/A P01857 26996964
    1628 5djd:A (2.3) BS02 GAL ? N/A P01857 26996964
    1629 5djd:B (2.3) BS01 GAL ? N/A P01857 26996964
    1630 5djx:A (2.25) BS03 GAL ? N/A P01857 26996964
    1631 5djx:B (2.25) BS02 GAL ? N/A P01857 26996964
    1632 5djx:D (2.25) BS04 GAL ? N/A P01857 26996964
    1633 5djy:A (2.15) BS02 GAL ? N/A P01857 26996964
    1634 5djy:B (2.15) BS01 GAL ? N/A P01857 26996964
    1635 5djz:A (1.9) BS02 GAL ? N/A P01857 26996964
    1636 5dk0:A (2.3) BS02 GAL ? N/A P01857 26996964
    1637 5dk0:B (2.3) BS01 GAL ? N/A P01857 26996964
    1638 5dk2:A (2.6) BS03 GAL ? N/A P01857 26996964
    1639 5dk2:B (2.6) BS02 GAL ? N/A P01857 26996964
    1640 5duv:A (1.9) BS02 GAL ? GO:0030246 ... P56470 26828567
    1641 5duv:B (1.9) BS02 GAL ? GO:0030246 ... P56470 26828567
    1642 5duv:C (1.9) BS02 GAL ? GO:0030246 ... P56470 26828567
    1643 5duv:D (1.9) BS02 GAL ? GO:0030246 ... P56470 26828567
    1644 5dux:B (1.85) BS02 GAL ? GO:0030246 ... P56470 26828567
    1645 5dux:D (1.85) BS02 GAL ? GO:0030246 ... P56470 26828567
    1646 5dvj:A (1.8) BS01 GAL ? N/A H7BRJ8 26861882
    1647 5dvj:B (1.8) BS01 GAL ? N/A H7BRJ8 26861882
    1648 5eiy:A (2.95) BS11 GAL 2.4.1.12 GO:0000166 ... Q3J125 26958837
    1649 5elb:A (1.08) BS02 GAL ? GO:0005576 ... Q57193 27082955
    1650 5elb:B (1.08) BS02 GAL ? GO:0005576 ... Q57193 27082955
    1651 5elb:C (1.08) BS01 GAL ? GO:0005576 ... Q57193 27082955
    1652 5elb:C (1.08) BS03 GAL ? GO:0005576 ... Q57193 27082955
    1653 5elb:D (1.08) BS02 GAL ? GO:0005576 ... Q57193 27082955
    1654 5elb:E (1.08) BS02 GAL ? GO:0005576 ... Q57193 27082955
    1655 5elb:F (1.08) BS03 GAL ? GO:0005576 ... Q57193 27082955
    1656 5elb:G (1.08) BS03 GAL ? GO:0005576 ... Q57193 27082955
    1657 5elb:H (1.08) BS02 GAL ? GO:0005576 ... Q57193 27082955
    1658 5elb:I (1.08) BS02 GAL ? GO:0005576 ... Q57193 27082955
    1659 5elb:J (1.08) BS02 GAL ? GO:0005576 ... Q57193 27082955
    1660 5elc:B (1.5) BS01 GAL ? GO:0005515 ... P01556 27082955
    1661 5elc:E (1.5) BS01 GAL ? GO:0005515 ... P01556 27082955
    1662 5eld:A (1.4) BS03 GAL ? GO:0005576 ... D6R7L2 27082955 PDBbind: -logKd/Ki=2.66, Kd=2.19mM
    1663 5eld:C (1.4) BS02 GAL ? GO:0005576 ... D6R7L2 27082955
    1664 5eld:E (1.4) BS03 GAL ? GO:0005576 ... D6R7L2 27082955 PDBbind: -logKd/Ki=2.66, Kd=2.19mM
    1665 5ele:D (1.6) BS01 GAL ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=1.52, Kd>30mM
    1666 5ele:G (1.6) BS01 GAL ? GO:0005515 ... P01556 27082955
    1667 5ele:J (1.6) BS01 GAL ? GO:0005515 ... P01556 27082955
    1668 5elf:A (1.55) BS02 GAL ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=2.34, Kd=4.57mM
    1669 5elf:D (1.55) BS01 GAL ? GO:0005515 ... P01556 27082955
    1670 5elf:E (1.55) BS02 GAL ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=2.34, Kd=4.57mM
    1671 5elf:G (1.55) BS01 GAL ? GO:0005515 ... P01556 27082955
    1672 5elf:J (1.55) BS01 GAL ? GO:0005515 ... P01556 27082955
    1673 5ews:A (2.0) BS01 GAL ? GO:0005515 ... P05162 27563008
    1674 5ews:C (2.0) BS02 GAL ? GO:0005515 ... P05162 27563008
    1675 5ews:D (2.0) BS02 GAL ? GO:0005515 ... P05162 27563008
    1676 5ews:G (2.0) BS02 GAL ? GO:0005515 ... P05162 27563008
    1677 5ews:H (2.0) BS02 GAL ? GO:0005515 ... P05162 27563008
    1678 5ews:I (2.0) BS02 GAL ? GO:0005515 ... P05162 27563008
    1679 5ews:J (2.0) BS02 GAL ? GO:0005515 ... P05162 27563008
    1680 5ews:M (2.0) BS02 GAL ? GO:0005515 ... P05162 27563008
    1681 5ews:N (2.0) BS01 GAL ? GO:0005515 ... P05162 27563008
    1682 5f7m:A (2.72) BS01 GAL ? N/A O52269 26764597
    1683 5f7w:A (2.81) BS02 GAL ? N/A O52269 26764597
    1684 5f7w:B (2.81) BS01 GAL ? N/A O52269 26764597
    1685 5f7y:A (2.44) BS01 GAL ? N/A O52269 26764597
    1686 5f7y:B (2.44) BS01 GAL ? N/A O52269 26764597
    1687 5f8r:A (2.44) BS01 GAL ? N/A O52269
    Q6DSZ5
    26764597
    1688 5f8r:B (2.44) BS01 GAL ? N/A O52269
    Q6DSZ5
    26764597
    1689 5f8w:A (1.56) BS01 GAL ? GO:0030246 ... H2FH31 27010847 MOAD: Kd=15uM
    1690 5f93:A (2.99) BS01 GAL ? N/A O52269
    Q6DSX7
    26764597
    1691 5f93:B (2.99) BS01 GAL ? N/A O52269
    Q6DSX7
    26764597
    1692 5f93:E (2.99) BS01 GAL ? N/A O52269
    Q6DSX7
    26764597
    1693 5f93:G (2.99) BS01 GAL ? N/A O52269
    Q6DSX7
    26764597
    1694 5f97:A (2.62) BS01 GAL ? N/A O52269
    Q6DSX7
    26764597
    1695 5f97:B (2.62) BS01 GAL ? N/A O52269
    Q6DSX7
    26764597
    1696 5f97:C (2.62) BS01 GAL ? N/A O52269
    Q6DSX7
    26764597
    1697 5f97:D (2.62) BS01 GAL ? N/A O52269
    Q6DSX7
    26764597
    1698 5f9a:A (2.44) BS01 GAL ? N/A O52269
    Q6DT10
    26764597
    1699 5f9d:A (2.59) BS01 GAL ? N/A O52269
    Q6DT10
    26764597
    1700 5fks:A (1.99) BS03 GAL 3.2.1.- N/A B3PKK9 26929175
    1701 5fks:A (1.99) BS07 GAL 3.2.1.- N/A B3PKK9 26929175
    1702 5fqg:A (2.3) BS01 GAL ? N/A A0A0H2YNR7 27038508
    1703 5fqh:A (2.1) BS01 GAL ? N/A A0A0H2YNR7 27038508
    1704 5fuu:H (4.19) BS01 GAL N/A N/A N/A 26941313
    1705 5gal:B (2.0) BS01 GAL ? GO:0005515 ... P47929 9760227
    1706 5glt:A (2.0) BS01 GAL ? GO:0005886 ... A0A1L1QJZ7 27742836
    1707 5glt:B (2.0) BS01 GAL ? GO:0005886 ... A0A1L1QJZ7 27742836
    1708 5glt:B (2.0) BS02 GAL ? GO:0005886 ... A0A1L1QJZ7 27742836
    1709 5glu:A (2.1) BS01 GAL ? GO:0005886 ... A0A1L1QJZ7 27742836 PDBbind: -logKd/Ki=4.02, Kd=96uM
    1710 5glu:B (2.1) BS01 GAL ? GO:0005886 ... A0A1L1QJZ7 27742836
    1711 5glu:B (2.1) BS03 GAL ? GO:0005886 ... A0A1L1QJZ7 27742836
    1712 5glw:A (2.0) BS01 GAL ? GO:0005886 ... A0A1L1QJZ7 27742836
    1713 5gm0:A (1.7) BS02 GAL ? GO:0005886 ... A0A1L1QJZ7 27742836
    1714 5gm0:B (1.7) BS02 GAL ? GO:0005886 ... A0A1L1QJZ7 27742836
    1715 5gm0:B (1.7) BS03 GAL ? GO:0005886 ... A0A1L1QJZ7 27742836
    1716 5gqf:A (1.82) BS01 GAL 3.2.1.140 N/A A0A024QYS6 28392148
    1717 5gqf:B (1.82) BS01 GAL 3.2.1.140 N/A A0A024QYS6 28392148
    1718 5gqg:A (2.7) BS01 GAL 3.2.1.140 N/A A0A024QYS6 28392148
    1719 5gqg:B (2.7) BS01 GAL 3.2.1.140 N/A A0A024QYS6 28392148
    1720 5gsq:A (1.85) BS02 GAL ? N/A P01857 28318221
    1721 5gsq:B (1.85) BS02 GAL ? N/A P01857 28318221
    1722 5gsq:C (1.85) BS01 GAL ? N/A P01857 28318221
    1723 5gw7:A (2.2) BS01 GAL 3.2.1.- GO:0004555 ... P42592 27688023
    1724 5gw7:B (2.2) BS01 GAL 3.2.1.- GO:0004555 ... P42592 27688023
    1725 5gzd:A (1.19) BS02 GAL ? GO:0030246 ... O00214 27973456
    1726 5gze:A (1.32) BS02 GAL ? GO:0030246 ... O00214 27973456
    1727 5gzf:A (2.002) BS02 GAL ? GO:0030246 ... O00214 27973456
    1728 5gzg:A (1.997) BS02 GAL ? GO:0030246 ... O00214 27973456
    1729 5hvw:A (1.95) BS02 GAL ? N/A P01861 27479095
    1730 5hy9:A (2.7) BS02 GAL ? N/A P01857 28985438
    1731 5hye:A (1.89) BS02 GAL ? N/A P01857 28985438
    1732 5hye:C (1.89) BS02 GAL ? N/A P01857 28985438
    1733 5hyf:A (1.8) BS02 GAL ? N/A P01857 28985438
    1734 5hyi:A (2.9) BS02 GAL ? N/A P01857 28985438
    1735 5hyi:B (2.9) BS01 GAL ? N/A P01857 28985438
    1736 5hyi:C (2.9) BS02 GAL ? N/A P01857 28985438
    1737 5hyi:D (2.9) BS02 GAL ? N/A P01857 28985438
    1738 5i4d:A (1.75) BS01 GAL ? GO:0005576 ... Q2G0X7 N/A
    1739 5ift:A (2.45) BS07 GAL 3.2.1.23 GO:0004553 ... A2QAN3 28391618
    1740 5ihr:A (2.4) BS06 GAL 3.2.1.23 GO:0004553 ... A2QAN3 28391618
    1741 5iuc:A (1.253) BS01 GAL ? N/A Q939N5 21765814
    1742 5iuc:B (1.253) BS01 GAL ? N/A Q939N5 21765814
    1743 5iw3:A (2.05) BS02 GAL ? N/A P01857 N/A
    1744 5iw6:A (2.34) BS02 GAL ? N/A P01857 N/A
    1745 5iw6:B (2.34) BS02 GAL ? N/A P01857 N/A
    1746 5j14:A (1.915) BS02 GAL N/A GO:0000272 ... N/A 28179425
    1747 5j14:B (1.915) BS02 GAL N/A GO:0000272 ... N/A 28179425
    1748 5j7z:A (2.15) BS02 GAL N/A GO:0000272 ... N/A 28179425
    1749 5jii:B (1.79) BS02 GAL ? N/A P01857 28528777
    1750 5jm1:E (1.95) BS04 GAL ? GO:0005575 ... P18670 27808459
    1751 5jm1:E (1.95) BS05 GAL ? GO:0005575 ... P18670 27808459
    1752 5jop:D (1.75) BS02 GAL N/A N/A N/A 28287405
    1753 5jop:D (1.75) BS03 GAL N/A N/A N/A 28287405
    1754 5jop:L (1.75) BS01 GAL N/A N/A N/A 28287405
    1755 5jop:L (1.75) BS02 GAL N/A N/A N/A 28287405
    1756 5jpg:A (1.9) BS02 GAL ? GO:0005634 ... P47967 34944498
    1757 5jpg:B (1.9) BS02 GAL ? GO:0005634 ... P47967 34944498
    1758 5jpv:A (1.9) BS01 GAL ? N/A P07306 28230359
    1759 5jpv:B (1.9) BS01 GAL ? N/A P07306 28230359
    1760 5jsd:A (1.48) BS06 GAL ? GO:0046718 ... A0A159BDB5 28209973
    1761 5jsd:B (1.48) BS01 GAL ? GO:0046718 ... A0A159BDB5 28209973
    1762 5jsd:C (1.48) BS01 GAL ? GO:0046718 ... A0A159BDB5 28209973
    1763 5jse:A (1.89) BS04 GAL ? GO:0046718 ... A0A159BDB5 28209973
    1764 5jse:B (1.89) BS01 GAL ? GO:0046718 ... A0A159BDB5 28209973
    1765 5jse:C (1.89) BS01 GAL ? GO:0046718 ... A0A159BDB5 28209973
    1766 5juv:A (2.27) BS05 GAL 3.2.1.23 GO:0004553 ... A2QAN3 28391618
    1767 5juv:A (2.27) BS06 GAL 3.2.1.23 GO:0004553 ... A2QAN3 28391618
    1768 5k6o:A (2.29) BS01 GAL N/A GO:0004553 ... N/A 27679487
    1769 5koe:A (1.79) BS02 GAL 2.4.1.- GO:0008107 ... Q9SWH5 28670741
    1770 5kor:B (2.2) BS03 GAL 2.4.1.- GO:0008107 ... Q9SWH5 27637560
    1771 5kor:C (2.2) BS02 GAL 2.4.1.- GO:0008107 ... Q9SWH5 27637560
    1772 5ldr:A (3.15) BS01 GAL 3.2.1.23 GO:0004553 ... D1LZK0 27599737
    1773 5ldr:B (3.15) BS01 GAL ? GO:0004553 ... D1LZK0 27599737
    1774 5lfv:B (2.3) BS01 GAL ? N/A P20917 27922006
    1775 5ln8:A (1.65) BS01 GAL ? N/A P33406 27507539 MOAD: Kd=44.3mM
    1776 5lne:A (2.2) BS01 GAL ? GO:0007155 ... A0A0H2V7F6 27667696 PDBbind: -logKd/Ki=4.76, Kd=17.43uM
    1777 5lne:B (2.2) BS01 GAL ? GO:0007155 ... A0A0H2V7F6 27667696
    1778 5m3v:A (1.97) BS02 GAL ? N/A P01857
    P01860
    28450393
    1779 5m3v:B (1.97) BS01 GAL ? N/A P01857 28450393
    1780 5mgc:A (2.3) BS05 GAL 3.2.1.23 GO:0004553 ... A2QAN3 28391618
    1781 5mgc:A (2.3) BS06 GAL 3.2.1.23 GO:0004553 ... A2QAN3 28391618
    1782 5mgd:A (2.15) BS06 GAL 3.2.1.23 GO:0004553 ... A2QAN3 28391618
    1783 5mu9:A (1.3) BS01 GAL ? GO:0046872 ... Q8X123 28665586
    1784 5mua:A (1.49) BS01 GAL ? GO:0030246 ... Q75WT9 28665586
    1785 5mua:B (1.49) BS05 GAL ? GO:0030246 ... Q75WT9 28665586
    1786 5mxg:A (2.2) BS01 GAL ? GO:0046872 ... C7BLE4 28806750
    1787 5mxh:A (1.95) BS01 GAL ? GO:0046872 ... C7BLE4 28806750 MOAD: ic50=377.96mM
    1788 5mxh:A (1.95) BS02 GAL ? GO:0046872 ... C7BLE4 28806750 MOAD: ic50=377.96mM
    1789 5mxh:A (1.95) BS03 GAL ? GO:0046872 ... C7BLE4 28806750 MOAD: ic50=377.96mM
    1790 5n0b:A (2.6) BS01 GAL 3.4.24.68 GO:0004222 ... P04958 28645943
    1791 5n0c:A (2.6) BS01 GAL 3.4.24.68 GO:0004222 ... P04958 28645943
    1792 5n0c:B (2.6) BS01 GAL 3.4.24.68 GO:0004222 ... P04958 28645943
    1793 5n7m:A (1.73) BS01 GAL ? N/A Q83884 28505592
    1794 5n7m:B (1.73) BS01 GAL ? N/A Q83884 28505592
    1795 5nf7:A (1.59) BS02 GAL ? GO:0030246 ... P17931 28554839
    1796 5nld:B (0.96) BS02 GAL N/A GO:0030246 ... N/A 29248541
    1797 5nle:A (1.845) BS02 GAL N/A GO:0030246 ... N/A 29248541
    1798 5nle:B (1.845) BS02 GAL N/A GO:0030246 ... N/A 29248541
    1799 5nle:C (1.845) BS02 GAL N/A GO:0030246 ... N/A 29248541
    1800 5nle:D (1.845) BS02 GAL N/A GO:0030246 ... N/A 29248541

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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