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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2486 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 3w9t:C (2.9) BS01 GAL ? GO:0000287 ... Q868M7 N/A
    1002 3w9t:C (2.9) BS02 GAL ? GO:0000287 ... Q868M7 N/A
    1003 3w9t:C (2.9) BS03 GAL ? GO:0000287 ... Q868M7 N/A
    1004 3w9t:C (2.9) BS04 GAL ? GO:0000287 ... Q868M7 N/A
    1005 3w9t:C (2.9) BS05 GAL ? GO:0000287 ... Q868M7 N/A
    1006 3w9t:D (2.9) BS01 GAL ? GO:0000287 ... Q868M7 N/A
    1007 3w9t:D (2.9) BS02 GAL ? GO:0000287 ... Q868M7 N/A
    1008 3w9t:D (2.9) BS03 GAL ? GO:0000287 ... Q868M7 N/A
    1009 3w9t:D (2.9) BS04 GAL ? GO:0000287 ... Q868M7 N/A
    1010 3w9t:D (2.9) BS06 GAL ? GO:0000287 ... Q868M7 N/A
    1011 3w9t:E (2.9) BS01 GAL ? GO:0000287 ... Q868M7 N/A
    1012 3w9t:E (2.9) BS03 GAL ? GO:0000287 ... Q868M7 N/A
    1013 3w9t:E (2.9) BS05 GAL ? GO:0000287 ... Q868M7 N/A
    1014 3w9t:E (2.9) BS06 GAL ? GO:0000287 ... Q868M7 N/A
    1015 3w9t:E (2.9) BS07 GAL ? GO:0000287 ... Q868M7 N/A
    1016 3w9t:E (2.9) BS08 GAL ? GO:0000287 ... Q868M7 N/A
    1017 3w9t:F (2.9) BS01 GAL ? GO:0000287 ... Q868M7 N/A
    1018 3w9t:F (2.9) BS02 GAL ? GO:0000287 ... Q868M7 N/A
    1019 3w9t:F (2.9) BS03 GAL ? GO:0000287 ... Q868M7 N/A
    1020 3w9t:F (2.9) BS04 GAL ? GO:0000287 ... Q868M7 N/A
    1021 3w9t:F (2.9) BS05 GAL ? GO:0000287 ... Q868M7 N/A
    1022 3w9t:G (2.9) BS01 GAL ? GO:0000287 ... Q868M7 N/A
    1023 3w9t:G (2.9) BS02 GAL ? GO:0000287 ... Q868M7 N/A
    1024 3w9t:G (2.9) BS03 GAL ? GO:0000287 ... Q868M7 N/A
    1025 3w9t:G (2.9) BS04 GAL ? GO:0000287 ... Q868M7 N/A
    1026 3w9t:G (2.9) BS05 GAL ? GO:0000287 ... Q868M7 N/A
    1027 3wf3:A (2.15) BS01 GAL 3.2.1.23 GO:0004553 ... P16278 N/A
    1028 3wf3:B (2.15) BS01 GAL 3.2.1.23 GO:0004553 ... P16278 N/A
    1029 3wf3:C (2.15) BS01 GAL 3.2.1.23 GO:0004553 ... P16278 N/A
    1030 3wf3:D (2.15) BS01 GAL 3.2.1.23 GO:0004553 ... P16278 N/A
    1031 3wg1:A (1.9) BS02 GAL 3.1.21.- GO:0004518 ... Q6WY08 24036446
    1032 3wg1:B (1.9) BS02 GAL 3.1.21.- GO:0004518 ... Q6WY08 24036446
    1033 3wg3:A (1.35) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 24036446
    1034 3wg3:B (1.35) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 24036446
    1035 3wg4:A (1.6) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 24036446
    1036 3wg4:B (1.6) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 24036446
    1037 3wjj:A (2.6) BS02 GAL ? N/A P01857 23744091
    1038 3wjj:B (2.6) BS02 GAL ? N/A P01857 23744091
    1039 3wjl:A (2.86) BS02 GAL ? N/A P01857 23744091
    1040 3wjl:B (2.86) BS01 GAL ? N/A P01857 23744091
    1041 3wkh:A (1.644) BS02 GAL 5.1.3.11 GO:0005975 ... F8WRK9 24362032
    1042 3wkn:A (2.9) BS02 GAL ? N/A P01857 26299673
    1043 3wkn:B (2.9) BS01 GAL ? N/A P01857 26299673
    1044 3wkn:C (2.9) BS02 GAL ? N/A P01857 26299673
    1045 3wkn:D (2.9) BS03 GAL ? N/A P01857 26299673
    1046 3wkn:I (2.9) BS02 GAL ? N/A P01857 26299673
    1047 3wkn:J (2.9) BS03 GAL ? N/A P01857 26299673
    1048 3wkn:M (2.9) BS02 GAL ? N/A P01857 26299673
    1049 3wkn:N (2.9) BS02 GAL ? N/A P01857 26299673
    1050 3wn5:A (2.78) BS02 GAL ? N/A P01857 24334029
    1051 3wn5:B (2.78) BS01 GAL ? N/A P01857 24334029
    1052 3wn5:E (2.78) BS02 GAL ? N/A P01857 24334029
    1053 3wuc:A (1.6) BS02 GAL ? GO:0005615 ... Q91786 25804418
    1054 3wuc:B (1.6) BS02 GAL ? GO:0005615 ... Q91786 25804418
    1055 3wud:A (1.68) BS02 GAL ? GO:0005615 ... Q98UD4 25804418
    1056 3wv6:A (1.95) BS02 GAL ? GO:0030246 ... O00182 28687490
    1057 3wv6:A (1.95) BS04 GAL ? GO:0030246 ... O00182 28687490
    1058 3wv6:B (1.95) BS02 GAL ? GO:0030246 ... O00182 28687490
    1059 3wv6:B (1.95) BS04 GAL ? GO:0030246 ... O00182 28687490
    1060 3zo0:A (1.99) BS01 GAL ? N/A P01863 18420815
    1061 3zr6:A (2.44) BS01 GAL 3.2.1.46 GO:0004336 ... P54818 21876145
    1062 3zsj:A (0.86) BS02 GAL ? GO:0030246 ... P17931 22111949
    1063 3zyb:A (2.29) BS02 GAL ? GO:0005737 ... Q05097 21919164
    1064 3zyb:B (2.29) BS04 GAL ? GO:0005737 ... Q05097 21919164
    1065 3zyb:B (2.29) BS05 GAL ? GO:0005737 ... Q05097 21919164
    1066 3zyb:C (2.29) BS02 GAL ? GO:0005737 ... Q05097 21919164
    1067 3zyb:D (2.29) BS02 GAL ? GO:0005737 ... Q05097 21919164
    1068 3zyb:E (2.29) BS02 GAL ? GO:0005737 ... Q05097 21919164
    1069 3zyb:F (2.29) BS02 GAL ? GO:0005737 ... Q05097 21919164
    1070 3zyb:F (2.29) BS04 GAL ? GO:0005737 ... Q05097 21919164
    1071 3zyb:G (2.29) BS02 GAL ? GO:0005737 ... Q05097 21919164
    1072 3zyb:H (2.29) BS04 GAL ? GO:0005737 ... Q05097 21919164
    1073 4a3x:A (1.65) BS01 GAL ? N/A Q6VBJ0 22349222
    1074 4a41:A (1.55) BS02 GAL 3.2.1.50 N/A Q8XM24 22479408 MOAD: Kd=591uM
    1075 4a4a:A (1.9) BS01 GAL 3.2.1.50 N/A Q8XM24 22090394
    1076 4a6o:A (2.8) BS01 GAL 3.2.1.50 N/A A0A0H2YU91 22479408
    1077 4a6o:B (2.8) BS01 GAL 3.2.1.50 N/A A0A0H2YU91 22479408
    1078 4af9:A (1.5) BS02 GAL ? N/A Q6VBJ0 23035251
    1079 4afa:A (2.05) BS01 GAL ? N/A Q6VBJ0 23035251
    1080 4afc:A (1.55) BS01 GAL ? N/A Q6VBJ0 23035251
    1081 4akb:C (1.95) BS04 GAL ? GO:0005575 ... P18670 24915077
    1082 4akb:E (1.95) BS04 GAL ? GO:0005575 ... P18670 24915077
    1083 4akb:G (1.95) BS04 GAL ? GO:0005575 ... P18670 24915077
    1084 4asl:A (1.24) BS01 GAL ? N/A Q6FUW5 23035251
    1085 4atf:A (1.9) BS01 GAL 3.2.1.81 GO:0004553 ... Q9RGX8 22778272
    1086 4atf:A (1.9) BS03 GAL 3.2.1.81 GO:0004553 ... Q9RGX8 22778272
    1087 4atf:A (1.9) BS05 GAL 3.2.1.81 GO:0004553 ... Q9RGX8 22778272
    1088 4atf:A (1.9) BS07 GAL 3.2.1.81 GO:0004553 ... Q9RGX8 22778272
    1089 4atf:B (1.9) BS01 GAL 3.2.1.81 GO:0004553 ... Q9RGX8 22778272
    1090 4atf:B (1.9) BS02 GAL 3.2.1.81 GO:0004553 ... Q9RGX8 22778272
    1091 4atf:B (1.9) BS04 GAL 3.2.1.81 GO:0004553 ... Q9RGX8 22778272
    1092 4atf:B (1.9) BS06 GAL 3.2.1.81 GO:0004553 ... Q9RGX8 22778272
    1093 4atf:C (1.9) BS01 GAL 3.2.1.81 GO:0004553 ... Q9RGX8 22778272
    1094 4atf:C (1.9) BS03 GAL 3.2.1.81 GO:0004553 ... Q9RGX8 22778272
    1095 4atf:C (1.9) BS05 GAL 3.2.1.81 GO:0004553 ... Q9RGX8 22778272
    1096 4atf:D (1.9) BS01 GAL 3.2.1.81 GO:0004553 ... Q9RGX8 22778272
    1097 4atf:D (1.9) BS03 GAL 3.2.1.81 GO:0004553 ... Q9RGX8 22778272
    1098 4atf:D (1.9) BS05 GAL 3.2.1.81 GO:0004553 ... Q9RGX8 22778272
    1099 4atf:D (1.9) BS07 GAL 3.2.1.81 GO:0004553 ... Q9RGX8 22778272
    1100 4aw7:A (1.33) BS03 GAL 3.2.1.178 N/A B5CY96 23150581
    1101 4aw7:A (1.33) BS06 GAL 3.2.1.178 N/A B5CY96 23150581
    1102 4ayj:A (3.0) BS01 GAL N/A GO:0005975 ... N/A 23230506
    1103 4ayj:B (3.0) BS03 GAL N/A GO:0005975 ... N/A 23230506
    1104 4ayj:C (3.0) BS01 GAL N/A GO:0005975 ... N/A 23230506
    1105 4ayj:D (3.0) BS01 GAL N/A GO:0005975 ... N/A 23230506
    1106 4b1q:P (-1.00) BS01 GAL ? GO:0005576 ... P58928 23281027
    1107 4b4q:A (2.0) BS02 GAL ? N/A Q47212 22812428 PDBbind: -logKd/Ki=5.75, Kd=1.76uM
    1108 4b4q:B (2.0) BS01 GAL ? N/A Q47212 22812428
    1109 4b4r:A (1.8) BS02 GAL ? N/A Q47212 22812428
    1110 4b4r:B (1.8) BS01 GAL ? N/A Q47212 22812428
    1111 4bh0:A (2.36) BS01 GAL ? GO:0019031 ... Q207Z6 23615615
    1112 4bh0:C (2.36) BS01 GAL ? GO:0019031 ... Q207Z6 23615615
    1113 4bh0:E (2.36) BS01 GAL ? GO:0019031 ... Q207Z6 23615615
    1114 4bmb:A (1.351) BS02 GAL ? GO:0030246 ... O00214 24418318
    1115 4bme:A (2.0) BS02 GAL ? GO:0030246 ... O00214 24418318
    1116 4bme:B (2.0) BS02 GAL ? GO:0030246 ... O00214 24418318
    1117 4bq4:A (2.05) BS01 GAL 3.2.1.81 GO:0004565 ... Q21HC5 23921382
    1118 4bq4:A (2.05) BS03 GAL 3.2.1.81 GO:0004565 ... Q21HC5 23921382
    1119 4bq4:B (2.05) BS01 GAL 3.2.1.81 GO:0004565 ... Q21HC5 23921382
    1120 4bq4:B (2.05) BS03 GAL 3.2.1.81 GO:0004565 ... Q21HC5 23921382
    1121 4bq5:A (2.3) BS01 GAL 3.2.1.81 GO:0004565 ... Q21HC5 23921382
    1122 4bq5:A (2.3) BS03 GAL 3.2.1.81 GO:0004565 ... Q21HC5 23921382
    1123 4bq5:A (2.3) BS06 GAL 3.2.1.81 GO:0004565 ... Q21HC5 23921382
    1124 4bq5:B (2.3) BS01 GAL 3.2.1.81 GO:0004565 ... Q21HC5 23921382
    1125 4bq5:B (2.3) BS03 GAL 3.2.1.81 GO:0004565 ... Q21HC5 23921382
    1126 4bsi:A (2.62) BS01 GAL ? GO:0019031 ... G0KQM4 23787694
    1127 4bsv:A (1.75) BS02 GAL ? N/A P01857 23924797
    1128 4bsv:B (1.75) BS01 GAL ? N/A P01857 23924797
    1129 4bsw:A (2.15) BS01 GAL ? N/A P01857 23924797
    1130 4bsw:B (2.15) BS02 GAL ? N/A P01857 23924797
    1131 4byh:A (2.3) BS01 GAL ? N/A P01857 23929778
    1132 4byh:B (2.3) BS02 GAL ? N/A P01857 23929778
    1133 4c16:A (1.93) BS03 GAL ? GO:0007155 ... P16581 26117840
    1134 4c16:B (1.93) BS03 GAL ? GO:0007155 ... P16581 26117840
    1135 4c55:A (2.35) BS02 GAL ? N/A P01861 24211234
    1136 4c55:B (2.35) BS02 GAL ? N/A P01861 24211234
    1137 4cce:A (2.06) BS01 GAL 3.2.1.46 GO:0004336 ... P54818 24297913
    1138 4cdh:A (2.3) BS01 GAL ? N/A P01857 25450767
    1139 4cdh:B (2.3) BS01 GAL ? N/A P01857 25450767
    1140 4cou:A (1.48) BS01 GAL ? N/A Q6FX55 26105055
    1141 4cov:A (1.5) BS01 GAL ? N/A Q6FX55 26105055
    1142 4cow:A (2.15) BS01 GAL ? N/A Q6FX55 26105055
    1143 4coy:A (1.8) BS01 GAL ? N/A Q6FX55 26105055
    1144 4coz:A (2.3) BS01 GAL ? N/A Q6FX55 26105055
    1145 4cp0:A (2.15) BS02 GAL ? N/A B4UMX2 N/A
    1146 4cp1:A (2.5) BS01 GAL ? N/A B4UMX2 N/A
    1147 4cp2:A (2.6) BS01 GAL ? N/A B4UMX2 N/A
    1148 4cp9:A (1.65) BS02 GAL ? GO:0005737 ... Q05097 25044671
    1149 4cp9:B (1.65) BS02 GAL ? GO:0005737 ... Q05097 25044671
    1150 4cp9:C (1.65) BS02 GAL ? GO:0005737 ... Q05097 25044671
    1151 4cp9:D (1.65) BS02 GAL ? GO:0005737 ... Q05097 25044671
    1152 4cpb:A (1.57) BS02 GAL ? GO:0005737 ... Q05097 25044671
    1153 4cpb:B (1.57) BS02 GAL ? GO:0005737 ... Q05097 25044671
    1154 4cpb:C (1.57) BS02 GAL ? GO:0005737 ... Q05097 25044671
    1155 4cpb:D (1.57) BS02 GAL ? GO:0005737 ... Q05097 25044671
    1156 4cqx:C (2.3) BS01 GAL ? GO:0019031 ... Q207Z6 24889237
    1157 4cqx:E (2.3) BS01 GAL ? GO:0019031 ... Q207Z6 24889237
    1158 4csy:A (2.41) BS01 GAL ? GO:0007155 ... P16581 26117840
    1159 4csy:B (2.41) BS01 GAL ? GO:0007155 ... P16581 26117840
    1160 4cub:A (2.1) BS01 GAL 3.2.1.23 N/A Q8DQP4 25210925
    1161 4cub:B (2.1) BS01 GAL 3.2.1.23 N/A Q8DQP4 25210925
    1162 4cuc:A (2.2) BS01 GAL 3.2.1.23 GO:0004553 ... A0A0H2UP19 25210925
    1163 4cyw:A (2.6) BS01 GAL ? GO:0019031 ... E0YNJ7 24870229
    1164 4cyw:C (2.6) BS01 GAL ? GO:0019031 ... E0YNJ7 24870229
    1165 4cyw:E (2.6) BS01 GAL ? GO:0019031 ... E0YNJ7 24870229
    1166 4d00:A (2.5) BS01 GAL ? GO:0019031 ... Q0A448 24870229
    1167 4d3w:A (1.5) BS01 GAL ? N/A Q6FUW5 26105055
    1168 4d4u:A (1.99) BS03 GAL ? GO:0008150 ... Q4WW81 25760594
    1169 4d5o:A (1.52) BS03 GAL 3.2.1.91 GO:0004553 ... P62694 25765184
    1170 4d6d:A (1.52) BS01 GAL N/A GO:0005975 ... N/A 25870881
    1171 4d6e:A (1.45) BS01 GAL N/A GO:0005975 ... N/A 25870881
    1172 4d6f:A (2.03) BS01 GAL N/A GO:0005975 ... N/A 25870881
    1173 4d6h:A (1.65) BS01 GAL N/A GO:0005975 ... N/A 25870881
    1174 4d6i:A (1.99) BS01 GAL N/A GO:0005975 ... N/A 25870881
    1175 4d6j:A (1.98) BS01 GAL N/A GO:0005975 ... N/A 25870881
    1176 4d71:A (1.77) BS01 GAL 3.2.1.102 GO:0005975 ... A0A0H2UKY3 25870881
    1177 4d72:A (2.11) BS01 GAL 3.2.1.102 GO:0005975 ... A0A0H2UKY4 25870881
    1178 4dj7:A (2.81) BS01 GAL ? GO:0019031 ... Q6VMK1 22674977 PDBbind: -logKd/Ki=6.30, Kd=0.5uM
    1179 4dj7:E (2.81) BS01 GAL ? GO:0019031 ... Q6VMK1 22674977
    1180 4duw:A (2.2) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 23486479
    1181 4duw:B (2.2) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 23486479
    1182 4duw:C (2.2) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 23486479
    1183 4duw:D (2.2) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 23486479
    1184 4dxg:A (2.5) BS01 GAL ? GO:0005576 ... A0A0H3K6A3 22949551 PDBbind: -logKd/Ki=7.06, Kd=87.0nM
    1185 4e8c:A (1.95) BS01 GAL 3.2.1.23 GO:0004553 ... A0A0H2UN19 22593580
    1186 4e8c:B (1.95) BS01 GAL 3.2.1.23 GO:0004553 ... A0A0H2UN19 22593580
    1187 4ee4:A (1.95) BS01 GAL 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90    		 GO:0005975 ... P15291 22740701
    1188 4en6:B (2.56) BS01 GAL ? GO:0005576 ... P46085 22684008
    1189 4en7:B (2.68) BS01 GAL ? GO:0005576 ... P46085 22684008
    1190 4f8l:A (1.5) BS01 GAL ? N/A P31522 23277582 MOAD: ic50~40mM
    1191 4f8n:A (2.501) BS02 GAL ? N/A P31522 23277582 MOAD: ic50~40mM
    1192 4f8o:A (1.9) BS01 GAL ? N/A P31522 23277582
    1193 4f8p:A (2.05) BS01 GAL ? N/A P31522 23277582 MOAD: ic50~40mM
    1194 4f8p:B (2.05) BS02 GAL ? N/A P31522 23277582 MOAD: ic50~40mM
    1195 4fqw:A (2.02) BS02 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 24265507
    1196 4fqz:A (2.8) BS01 GAL ? GO:0030246 ... O00214 22913484
    1197 4fra:A (1.43) BS02 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 24265507
    1198 4frb:A (1.54) BS02 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 24265507
    1199 4frd:A (1.55) BS02 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 24265507
    1200 4fre:A (1.85) BS02 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 24265507
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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