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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2486 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 3aye:B (2.0) BS02 GAL ? GO:0030246 ... P17931 21949831
    802 3bwr:A (2.25) BS01 GAL ? GO:0005198 ... P03087 18353982
    803 3bwr:C (2.25) BS01 GAL ? GO:0005198 ... P03087 18353982
    804 3bwr:E (2.25) BS01 GAL ? GO:0005198 ... P03087 18353982
    805 3c2s:A (2.3) BS01 GAL ? N/A P01857 18560159
    806 3ca4:A (1.55) BS01 GAL 3.2.2.22 N/A P33183 18798567
    807 3ca4:A (1.55) BS02 GAL 3.2.2.22 N/A P33183 18798567
    808 3chb:D (1.25) BS01 GAL ? GO:0005515 ... P01556 9753553
    809 3chb:E (1.25) BS01 GAL ? GO:0005515 ... P01556 9753553
    810 3chb:F (1.25) BS01 GAL ? GO:0005515 ... P01556 9753553
    811 3chb:G (1.25) BS01 GAL ? GO:0005515 ... P01556 9753553
    812 3chb:H (1.25) BS01 GAL ? GO:0005515 ... P01556 9753553
    813 3cu0:A (1.9) BS01 GAL 2.4.1.135 GO:0015018 ... O94766 18400750
    814 3cu0:A (1.9) BS02 GAL 2.4.1.135 GO:0015018 ... O94766 18400750
    815 3cu0:B (1.9) BS01 GAL 2.4.1.135 GO:0015018 ... O94766 18400750
    816 3cu0:B (1.9) BS02 GAL 2.4.1.135 GO:0015018 ... O94766 18400750
    817 3dh4:A (2.7) BS01 GAL ? GO:0005412 ... P96169 18599740
    818 3dh4:B (2.7) BS01 GAL ? GO:0005412 ... P96169 18599740
    819 3dh4:C (2.7) BS01 GAL ? GO:0005412 ... P96169 18599740
    820 3dh4:D (2.7) BS01 GAL ? GO:0005412 ... P96169 18599740
    821 3do3:B (2.5) BS02 GAL ? N/A P01857 N/A
    822 3e1f:1 (3.0) BS03 GAL 3.2.1.23 GO:0000287 ... P00722 19472413
    823 3e1f:1 (3.0) BS04 GAL 3.2.1.23 GO:0000287 ... P00722 19472413
    824 3e1f:2 (3.0) BS04 GAL 3.2.1.23 GO:0000287 ... P00722 19472413
    825 3e1f:2 (3.0) BS05 GAL 3.2.1.23 GO:0000287 ... P00722 19472413
    826 3e1f:3 (3.0) BS03 GAL 3.2.1.23 GO:0000287 ... P00722 19472413
    827 3e1f:4 (3.0) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 19472413
    828 3e6j:A (1.67) BS01 GAL ? N/A Q2VGE8 18818359
    829 3ef2:A (1.8) BS01 GAL ? GO:0046872 ... Q8X123 19426740
    830 3ef2:A (1.8) BS03 GAL ? GO:0046872 ... Q8X123 19426740
    831 3ef2:B (1.8) BS01 GAL ? GO:0046872 ... Q8X123 19426740
    832 3ef2:B (1.8) BS03 GAL ? GO:0046872 ... Q8X123 19426740
    833 3ef2:C (1.8) BS01 GAL ? GO:0046872 ... Q8X123 19426740
    834 3ef2:C (1.8) BS03 GAL ? GO:0046872 ... Q8X123 19426740
    835 3ef2:D (1.8) BS01 GAL ? GO:0046872 ... Q8X123 19426740
    836 3ef2:D (1.8) BS03 GAL ? GO:0046872 ... Q8X123 19426740
    837 3eyv:H (2.5) BS01 GAL N/A N/A N/A 19901987
    838 3fru:C (2.2) BS01 GAL ? N/A P13599 9493268
    839 3hg2:B (2.3) BS01 GAL 3.2.1.22 GO:0003824 ... P06280 19940122
    840 3hg4:B (2.3) BS02 GAL 3.2.1.22 GO:0003824 ... P06280 19940122
    841 3hg5:B (2.3) BS02 GAL 3.2.1.22 GO:0003824 ... P06280 19940122
    842 3i0g:A (1.4) BS04 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 20655926
    843 3i0l:A (1.6) BS03 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 20655926
    844 3i8t:A (2.1) BS02 GAL ? GO:0030246 ... Q8K419 21358051
    845 3ikn:A (1.6) BS04 GAL ? N/A P35247 19799916
    846 3ikn:B (1.6) BS04 GAL ? N/A P35247 19799916
    847 3ikn:C (1.6) BS04 GAL ? N/A P35247 19799916
    848 3k0v:A (1.91) BS02 GAL 3.4.21.- GO:0005576 ... P24627 20371371
    849 3lse:A (2.69) BS02 GAL ? GO:0030246 ... O00182 20227520
    850 3m2m:A (2.95) BS02 GAL ? GO:0002317 ... P11762 20873803
    851 3m2m:C (2.95) BS02 GAL ? GO:0002317 ... P11762 20873803
    852 3m2m:D (2.95) BS02 GAL ? GO:0002317 ... P11762 20873803
    853 3m2m:E (2.95) BS02 GAL ? GO:0002317 ... P11762 20873803
    854 3m2m:H (2.95) BS02 GAL ? GO:0002317 ... P11762 20873803
    855 3m3c:A (2.0) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 20530247 PDBbind: -logKd/Ki=4.06, Kd=86.21uM
    856 3m3c:B (2.0) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 20530247
    857 3m3e:A (2.1) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 20530247 PDBbind: -logKd/Ki=4.43, Kd=37.45uM
    858 3m3e:B (2.1) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 20530247
    859 3m3e:C (2.1) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 20530247
    860 3m3e:D (2.1) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 20530247
    861 3m3o:A (2.1) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 20530247 PDBbind: -logKd/Ki=3.60, Kd=250.63uM
    862 3m3q:A (2.2) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 20530247
    863 3m3q:B (2.2) BS01 GAL 3.1.21.- GO:0004518 ... Q6WY08 20530247
    864 3nbc:A (1.01) BS01 GAL ? GO:0030246 ... B2ZRS9 22298779
    865 3nbd:A (1.15) BS01 GAL ? GO:0030246 ... B2ZRS9 22298779
    866 3nbd:B (1.15) BS01 GAL ? GO:0030246 ... B2ZRS9 22298779
    867 3njs:A (2.1) BS02 GAL 3.2.2.22 GO:0000166 ... D9J2T9 N/A
    868 3nv2:A (2.34) BS01 GAL ? GO:0030246 ... O00182 20861009
    869 3nv3:A (1.57) BS01 GAL ? GO:0030246 ... O00182 20861009
    870 3nv4:A (1.99) BS02 GAL ? GO:0030246 ... O00182 20861009
    871 3ob8:A (2.8) BS01 GAL 3.2.1.23 GO:0003824 ... P00723 22193516
    872 3ob8:B (2.8) BS01 GAL 3.2.1.23 GO:0003824 ... P00723 22193516
    873 3ob8:C (2.8) BS01 GAL 3.2.1.23 GO:0003824 ... P00723 22193516
    874 3ob8:D (2.8) BS01 GAL 3.2.1.23 GO:0003824 ... P00723 22193516
    875 3ogr:A (1.5) BS08 GAL 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    876 3oo6:A (2.15) BS01 GAL ? GO:0015768 ... Q27GR2 21168419 MOAD: Kd=9.8nM
    877 3oo6:B (2.15) BS01 GAL ? GO:0015768 ... Q27GR2 21168419 MOAD: Kd=9.8nM
    878 3oy8:A (2.19) BS02 GAL ? GO:0002317 ... P09382 20826047 PDBbind: -logKd/Ki=3.66, Kd=220uM
    879 3oy8:B (2.19) BS02 GAL ? GO:0002317 ... P09382 20826047
    880 3oyw:A (2.5) BS02 GAL ? GO:0002317 ... P09382 20826047
    881 3oyw:B (2.5) BS02 GAL ? GO:0002317 ... P09382 20826047
    882 3phz:A (1.7) BS01 GAL ? GO:0030246 ... Q75WT9 21436237
    883 3phz:B (1.7) BS01 GAL ? GO:0030246 ... Q75WT9 21436237
    884 3q3a:B (1.4) BS01 GAL ? N/A Q5F4T5 21525337
    885 3qdt:A (1.3) BS01 GAL ? GO:0030246 ... F2Z266 21303815
    886 3qdt:B (1.3) BS01 GAL ? GO:0030246 ... F2Z266 21303815
    887 3qdx:A (1.7) BS01 GAL ? GO:0030246 ... F2Z266 21303815
    888 3qdx:B (1.7) BS01 GAL ? GO:0030246 ... F2Z266 21303815
    889 3qdy:A (2.0) BS01 GAL ? GO:0030246 ... F2Z266 21303815
    890 3qdy:B (2.0) BS01 GAL ? GO:0030246 ... F2Z266 21303815
    891 3qum:H (3.2) BS01 GAL N/A N/A N/A 22037582
    892 3rsj:A (2.0) BS01 GAL 3.4.24.69 GO:0005576 ... A7GBG3 21849494
    893 3rsj:B (2.0) BS01 GAL 3.4.24.69 GO:0005576 ... A7GBG3 21849494
    894 3rsj:C (2.0) BS01 GAL 3.4.24.69 GO:0005576 ... A7GBG3 21849494
    895 3rsj:D (2.0) BS01 GAL 3.4.24.69 GO:0005576 ... A7GBG3 21849494
    896 3rti:B (2.8) BS01 GAL 3.2.2.22 N/A P02879 1433290
    897 3rti:B (2.8) BS02 GAL 3.2.2.22 N/A P02879 1433290
    898 3rtj:B (3.0) BS01 GAL 3.2.2.22 N/A P02879 1433290
    899 3rtj:B (3.0) BS02 GAL 3.2.2.22 N/A P02879 1433290
    900 3ry6:B (3.8) BS01 GAL ? N/A P01857 21856937
    901 3s5z:A (2.001) BS02 GAL 3.2.1.22 GO:0003824 ... P06280 22195554
    902 3s5z:B (2.001) BS02 GAL 3.2.1.22 GO:0003824 ... P06280 22195554
    903 3sx3:A (1.45) BS03 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 22349229
    904 3sx5:A (1.43) BS02 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 22349229
    905 3sx7:A (1.42) BS02 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 22349229
    906 3sx8:A (1.47) BS02 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 22349229
    907 3sxa:A (1.5) BS02 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 22349229
    908 3sxb:A (1.49) BS02 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 22349229
    909 3sxc:A (1.9) BS02 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 22349229
    910 3sxd:A (1.55) BS02 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 22349229
    911 3sxe:A (1.49) BS02 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 22349229
    912 3sxe:A (1.49) BS03 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 22349229
    913 3sxg:A (1.86) BS02 GAL 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 22349229
    914 3thc:A (1.8) BS01 GAL 3.2.1.23 GO:0004553 ... P16278 22128166
    915 3thc:B (1.8) BS01 GAL 3.2.1.23 GO:0004553 ... P16278 22128166
    916 3thc:C (1.8) BS01 GAL 3.2.1.23 GO:0004553 ... P16278 22128166
    917 3thc:D (1.8) BS01 GAL 3.2.1.23 GO:0004553 ... P16278 22128166
    918 3ube:C (2.15) BS01 GAL ? GO:0019031 ... C3W5S1 22072785
    919 3ube:E (2.15) BS01 GAL ? GO:0019031 ... C3W5S1 22072785
    920 3ube:I (2.15) BS01 GAL ? GO:0019031 ... C3W5S1 22072785
    921 3ube:K (2.15) BS01 GAL ? GO:0019031 ... C3W5S1 22072785
    922 3ubn:C (2.5079) BS01 GAL ? GO:0019031 ... C3W5S1 22072785
    923 3ubn:G (2.5079) BS01 GAL ? GO:0019031 ... C3W5S1 22072785
    924 3uet:A (2.1) BS01 GAL 3.2.1.111 GO:0004560 ... B7GNN8 22451675
    925 3uet:B (2.1) BS01 GAL 3.2.1.111 GO:0004560 ... B7GNN8 22451675
    926 3ujo:A (2.0) BS02 GAL ? GO:0030246 ... B3EWQ9 23794513
    927 3ujo:B (2.0) BS02 GAL ? GO:0030246 ... B3EWQ9 23794513
    928 3ujo:C (2.0) BS02 GAL ? GO:0030246 ... B3EWQ9 23794513
    929 3ujo:D (2.0) BS03 GAL ? GO:0030246 ... B3EWQ9 23794513
    930 3ujq:A (2.06) BS01 GAL ? GO:0030246 ... B3EWQ9 23794513
    931 3ujq:B (2.06) BS01 GAL ? GO:0030246 ... B3EWQ9 23794513
    932 3ujq:C (2.06) BS01 GAL ? GO:0030246 ... B3EWQ9 23794513
    933 3ujq:D (2.06) BS01 GAL ? GO:0030246 ... B3EWQ9 23794513
    934 3ul2:A (2.5) BS03 GAL ? GO:0030246 ... B3EWQ9 23794513
    935 3ul2:B (2.5) BS03 GAL ? GO:0030246 ... B3EWQ9 23794513
    936 3ul2:C (2.5) BS03 GAL ? GO:0030246 ... B3EWQ9 23794513
    937 3ul2:D (2.5) BS03 GAL ? GO:0030246 ... B3EWQ9 23794513
    938 3urm:A (1.801) BS01 GAL ? N/A P25548 23267119
    939 3urm:B (1.801) BS01 GAL ? N/A P25548 23267119
    940 3v7m:A (2.02) BS01 GAL ? N/A P01857 22553781
    941 3v8c:A (2.77) BS01 GAL ? N/A P01857 22553781
    942 3v8c:B (2.77) BS01 GAL ? N/A P01857 22553781
    943 3v95:A (2.7) BS01 GAL ? N/A P01857 22553781
    944 3v95:B (2.7) BS02 GAL ? N/A P01857 22553781
    945 3vkl:A (2.55) BS02 GAL ? GO:0030246 ... O00214 22913484
    946 3vkl:A (2.55) BS04 GAL ? GO:0030246 ... O00214 22913484
    947 3vkl:B (2.55) BS02 GAL ? GO:0030246 ... O00214 22913484
    948 3vkl:B (2.55) BS04 GAL ? GO:0030246 ... O00214 22913484
    949 3vkm:A (2.98) BS02 GAL ? GO:0030246 ... O00214 22913484
    950 3vkm:A (2.98) BS05 GAL ? GO:0030246 ... O00214 22913484
    951 3vkm:B (2.98) BS02 GAL ? GO:0030246 ... O00214 22913484
    952 3vkm:B (2.98) BS05 GAL ? GO:0030246 ... O00214 22913484
    953 3vko:A (2.08) BS01 GAL ? GO:0030246 ... O00214 22913484
    954 3vko:B (2.08) BS01 GAL ? GO:0030246 ... O00214 22913484
    955 3vsz:A (2.893) BS01 GAL ? GO:0004553 ... A3DD67 22960181
    956 3vsz:A (2.893) BS02 GAL ? GO:0004553 ... A3DD67 22960181
    957 3vsz:B (2.893) BS01 GAL ? GO:0004553 ... A3DD67 22960181
    958 3vsz:B (2.893) BS02 GAL ? GO:0004553 ... A3DD67 22960181
    959 3vsz:C (2.893) BS01 GAL ? GO:0004553 ... A3DD67 22960181
    960 3vsz:C (2.893) BS02 GAL ? GO:0004553 ... A3DD67 22960181
    961 3vsz:E (2.893) BS01 GAL ? GO:0004553 ... A3DD67 22960181
    962 3vsz:E (2.893) BS02 GAL ? GO:0004553 ... A3DD67 22960181
    963 3vsz:F (2.893) BS01 GAL ? GO:0004553 ... A3DD67 22960181
    964 3vsz:F (2.893) BS02 GAL ? GO:0004553 ... A3DD67 22960181
    965 3vsz:F (2.893) BS03 GAL ? GO:0004553 ... A3DD67 22960181
    966 3vsz:F (2.893) BS04 GAL ? GO:0004553 ... A3DD67 22960181
    967 3vt0:A (2.913) BS01 GAL ? GO:0004553 ... A3DD67 22960181
    968 3vt0:B (2.913) BS02 GAL ? GO:0004553 ... A3DD67 22960181
    969 3vt0:C (2.913) BS02 GAL ? GO:0004553 ... A3DD67 22960181
    970 3vt0:E (2.913) BS02 GAL ? GO:0004553 ... A3DD67 22960181
    971 3vt0:F (2.913) BS02 GAL ? GO:0004553 ... A3DD67 22960181
    972 3vt0:F (2.913) BS04 GAL ? GO:0004553 ... A3DD67 22960181
    973 3vt1:A (3.187) BS01 GAL ? GO:0004553 ... A3DD67 22960181
    974 3vt1:B (3.187) BS01 GAL ? GO:0004553 ... A3DD67 22960181
    975 3vt1:C (3.187) BS01 GAL ? GO:0004553 ... A3DD67 22960181
    976 3vt1:C (3.187) BS02 GAL ? GO:0004553 ... A3DD67 22960181
    977 3vt1:E (3.187) BS01 GAL ? GO:0004553 ... A3DD67 22960181
    978 3vt1:F (3.187) BS01 GAL ? GO:0004553 ... A3DD67 22960181
    979 3vt1:F (3.187) BS02 GAL ? GO:0004553 ... A3DD67 22960181
    980 3vv1:A (1.5) BS02 GAL ? GO:0005737 ... Q9N384 23481096
    981 3vv1:B (1.5) BS02 GAL ? GO:0005737 ... Q9N384 23481096
    982 3vzw:X (3.2) BS01 GAL ? GO:0006811 ... Q5RT80 20351243
    983 3w5g:A (3.0) BS01 GAL 3.2.1.23 GO:0004553 ... O81100 N/A
    984 3w5g:A (3.0) BS02 GAL 3.2.1.23 GO:0004553 ... O81100 N/A
    985 3w5g:A (3.0) BS03 GAL 3.2.1.23 GO:0004553 ... O81100 N/A
    986 3w5g:A (3.0) BS04 GAL 3.2.1.23 GO:0004553 ... O81100 N/A
    987 3w5g:B (3.0) BS01 GAL 3.2.1.23 GO:0004553 ... O81100 N/A
    988 3w5g:B (3.0) BS02 GAL 3.2.1.23 GO:0004553 ... O81100 N/A
    989 3w5g:B (3.0) BS03 GAL 3.2.1.23 GO:0004553 ... O81100 N/A
    990 3w5g:B (3.0) BS04 GAL 3.2.1.23 GO:0004553 ... O81100 N/A
    991 3w9t:A (2.9) BS01 GAL ? GO:0000287 ... Q868M7 N/A
    992 3w9t:A (2.9) BS02 GAL ? GO:0000287 ... Q868M7 N/A
    993 3w9t:A (2.9) BS03 GAL ? GO:0000287 ... Q868M7 N/A
    994 3w9t:A (2.9) BS04 GAL ? GO:0000287 ... Q868M7 N/A
    995 3w9t:A (2.9) BS05 GAL ? GO:0000287 ... Q868M7 N/A
    996 3w9t:B (2.9) BS01 GAL ? GO:0000287 ... Q868M7 N/A
    997 3w9t:B (2.9) BS02 GAL ? GO:0000287 ... Q868M7 N/A
    998 3w9t:B (2.9) BS03 GAL ? GO:0000287 ... Q868M7 N/A
    999 3w9t:B (2.9) BS04 GAL ? GO:0000287 ... Q868M7 N/A
    1000 3w9t:B (2.9) BS05 GAL ? GO:0000287 ... Q868M7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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