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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2486 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2001 6h64:F (1.8) BS01 GAL ? GO:0030246 ... P17931 30298550
    2002 6h64:F (1.8) BS03 GAL ? GO:0030246 ... P17931 30298550
    2003 6h70:A (1.83) BS01 GAL ? N/A Q83884 30602609
    2004 6h70:B (1.83) BS01 GAL ? N/A Q83884 30602609
    2005 6h72:A (2.3) BS01 GAL ? N/A Q83884 30602609
    2006 6h72:B (2.3) BS01 GAL ? N/A Q83884 30602609
    2007 6h9y:A (1.31) BS01 GAL ? GO:0019028 ... Q0PRF2 31226167
    2008 6ha0:A (1.85) BS01 GAL ? GO:0019028 ... A0A0S0VKY7 31226167
    2009 6hjd:B (1.54) BS02 GAL ? GO:0005515 ... P01556 31439922
    2010 6hmy:A (1.6) BS01 GAL ? GO:0005515 ... P01556 31439922
    2011 6hmy:B (1.6) BS02 GAL ? GO:0005515 ... P01556 31439922
    2012 6hmy:C (1.6) BS01 GAL ? GO:0005515 ... P01556 31439922
    2013 6hmy:D (1.6) BS01 GAL ? GO:0005515 ... P01556 31439922
    2014 6hmy:E (1.6) BS01 GAL ? GO:0005515 ... P01556 31439922
    2015 6hmy:F (1.6) BS01 GAL ? GO:0005515 ... P01556 31439922
    2016 6hmy:G (1.6) BS01 GAL ? GO:0005515 ... P01556 31439922
    2017 6hmy:H (1.6) BS01 GAL ? GO:0005515 ... P01556 31439922
    2018 6hmy:I (1.6) BS01 GAL ? GO:0005515 ... P01556 31439922
    2019 6hmy:J (1.6) BS02 GAL ? GO:0005515 ... P01556 31439922
    2020 6hur:A (1.297) BS02 GAL ? GO:0015768 ... A0A1S2VYK0 31489370
    2021 6hus:A (1.409) BS04 GAL ? GO:0015768 ... A0A1S2VYK0 31489370
    2022 6ial:H (1.45) BS01 GAL ? GO:0005576 ... P32890 30736336
    2023 6ial:J (1.45) BS01 GAL ? GO:0005576 ... P32890 30736336
    2024 6ik5:A (1.82) BS01 GAL 3.2.1.23 GO:0004553 ... O81100 33011862
    2025 6ik5:B (1.82) BS01 GAL 3.2.1.23 GO:0004553 ... O81100 33011862
    2026 6ik6:A (2.791) BS01 GAL 3.2.1.23 GO:0004553 ... O81100 33011862
    2027 6ik6:B (2.791) BS01 GAL 3.2.1.23 GO:0004553 ... O81100 33011862
    2028 6ik6:B (2.791) BS02 GAL 3.2.1.23 GO:0004553 ... O81100 33011862
    2029 6ik7:A (3.1) BS01 GAL 3.2.1.23 GO:0004553 ... O81100 33011862
    2030 6ik7:B (3.1) BS01 GAL 3.2.1.23 GO:0004553 ... O81100 33011862
    2031 6ik8:A (2.8) BS01 GAL 3.2.1.23 GO:0004553 ... O81100 33011862
    2032 6ik8:A (2.8) BS02 GAL 3.2.1.23 GO:0004553 ... O81100 33011862
    2033 6ik8:B (2.8) BS01 GAL 3.2.1.23 GO:0004553 ... O81100 33011862
    2034 6jyn:A (1.599) BS01 GAL ? N/A A0A509GV45 31118252
    2035 6jyn:B (1.599) BS01 GAL ? N/A A0A509GV45 31118252
    2036 6jyn:C (1.599) BS01 GAL ? N/A A0A509GV45 31118252
    2037 6jyn:D (1.599) BS01 GAL ? N/A A0A509GV45 31118252
    2038 6jys:A (1.697) BS01 GAL ? N/A A0A509GV48 31118252
    2039 6jys:B (1.697) BS01 GAL ? N/A A0A509GV48 31118252
    2040 6jys:C (1.697) BS01 GAL ? N/A A0A509GV48 31118252
    2041 6jys:D (1.697) BS01 GAL ? N/A A0A509GV48 31118252
    2042 6k2n:B (1.8) BS01 GAL ? GO:0019028 ... E2EA82 31620994
    2043 6k2o:A (2.296) BS01 GAL ? GO:0019028 ... E2EA82 31620994
    2044 6k2z:A (2.0) BS01 GAL ? GO:0005515 ... Q8TCE9 32525264
    2045 6k2z:A (2.0) BS02 GAL ? GO:0005515 ... Q8TCE9 32525264
    2046 6k2z:B (2.0) BS01 GAL ? GO:0005515 ... Q8TCE9 32525264
    2047 6k2z:B (2.0) BS02 GAL ? GO:0005515 ... Q8TCE9 32525264
    2048 6kqs:A (1.4) BS01 GAL ? N/A U2PDT9 32620774
    2049 6kqt:A (2.0) BS01 GAL ? N/A U2PDT9 32620774
    2050 6kru:A (2.3) BS02 GAL ? N/A P01867 31878295
    2051 6kru:B (2.3) BS02 GAL ? N/A P01867 31878295
    2052 6kru:C (2.3) BS01 GAL ? N/A P01867 31878295
    2053 6kru:D (2.3) BS02 GAL ? N/A P01867 31878295
    2054 6kru:E (2.3) BS02 GAL ? N/A P01867 31878295
    2055 6kru:F (2.3) BS02 GAL ? N/A P01867 31878295
    2056 6l67:A (1.97) BS01 GAL ? GO:0002667 ... Q05315 32081418
    2057 6l67:A (1.97) BS02 GAL ? GO:0002667 ... Q05315 32081418
    2058 6lf2:A (1.6) BS01 GAL ? GO:0030246 ... A0A646QV53 33328520
    2059 6lf2:A (1.6) BS02 GAL ? GO:0030246 ... A0A646QV53 33328520
    2060 6lf2:B (1.6) BS01 GAL ? GO:0030246 ... A0A646QV53 33328520
    2061 6ljq:A (1.49) BS02 GAL ? GO:0005575 ... A8MUM7 33011338
    2062 6ljr:A (2.0) BS02 GAL ? GO:0005575 ... A8MUM7 33011338
    2063 6m55:A (3.0) BS01 GAL ? GO:0004553 ... Q564N5 32713015
    2064 6m55:A (3.0) BS02 GAL ? GO:0004553 ... Q564N5 32713015
    2065 6m55:D (3.0) BS01 GAL ? GO:0004553 ... Q564N5 32713015
    2066 6m55:D (3.0) BS02 GAL ? GO:0004553 ... Q564N5 32713015
    2067 6m5y:A (1.38) BS02 GAL ? GO:0002317 ... P09382 34735570
    2068 6m5y:A (1.38) BS04 GAL ? GO:0002317 ... P09382 34735570
    2069 6mar:H (4.5) BS01 GAL N/A N/A N/A 30209313
    2070 6mar:L (4.5) BS01 GAL N/A N/A N/A 30209313
    2071 6mar:M (4.5) BS01 GAL N/A N/A N/A 30209313
    2072 6mar:N (4.5) BS01 GAL N/A N/A N/A 30209313
    2073 6n3r:B (2.397) BS01 GAL ? GO:0030246 ... A0A0A7EMW6 N/A
    2074 6n3r:C (2.397) BS01 GAL ? GO:0030246 ... A0A0A7EMW6 N/A
    2075 6n3r:D (2.397) BS01 GAL ? GO:0030246 ... A0A0A7EMW6 N/A
    2076 6n3r:F (2.397) BS01 GAL ? GO:0030246 ... A0A0A7EMW6 N/A
    2077 6n3r:H (2.397) BS01 GAL ? GO:0030246 ... A0A0A7EMW6 N/A
    2078 6nwh:A (2.03) BS02 GAL ? GO:0006355 ... Q8XMB9 31282473
    2079 6nwh:B (2.03) BS02 GAL ? GO:0006355 ... Q8XMB9 31282473
    2080 6nwj:A (2.16) BS02 GAL ? GO:0006355 ... Q8XMB9 31282473
    2081 6nwj:B (2.16) BS02 GAL ? GO:0006355 ... Q8XMB9 31282473
    2082 6nwm:A (2.11) BS01 GAL ? GO:0006355 ... Q8XMB9 31282473
    2083 6nwm:B (2.11) BS02 GAL ? GO:0006355 ... Q8XMB9 31282473
    2084 6nwo:D (2.11) BS01 GAL ? GO:0006355 ... Q8XMB9 31282473
    2085 6nx3:A (1.87) BS02 GAL ? GO:0006355 ... Q8XMB9 31282473
    2086 6nx3:B (1.87) BS02 GAL ? GO:0006355 ... Q8XMB9 31282473
    2087 6nx3:C (1.87) BS02 GAL ? GO:0006355 ... Q8XMB9 31282473
    2088 6nx3:D (1.87) BS02 GAL ? GO:0006355 ... Q8XMB9 31282473
    2089 6nx3:E (1.87) BS02 GAL ? GO:0006355 ... Q8XMB9 31282473
    2090 6nx3:F (1.87) BS02 GAL ? GO:0006355 ... Q8XMB9 31282473
    2091 6oai:B (1.9) BS02 GAL ? GO:0019028 ... D2DXN5 32208455
    2092 6olp:G (4.2) BS01 GAL N/A N/A N/A 31306470
    2093 6olp:H (4.2) BS01 GAL N/A N/A N/A 31306470
    2094 6olp:H (4.2) BS02 GAL N/A N/A N/A 31306470
    2095 6olp:I (4.2) BS01 GAL N/A N/A N/A 31306470
    2096 6or4:A (2.1) BS01 GAL ? GO:0004560 ... A0A0H2US78 31266803
    2097 6or4:B (2.1) BS01 GAL ? GO:0004560 ... A0A0H2US78 31266803
    2098 6orf:A (1.7) BS02 GAL ? GO:0004560 ... A0A0H2US78 31266803
    2099 6orf:B (1.7) BS02 GAL ? GO:0004560 ... A0A0H2US78 31266803
    2100 6orh:A (1.62) BS01 GAL ? GO:0004560 ... A0A0H2US78 31266803
    2101 6orh:B (1.62) BS01 GAL ? GO:0004560 ... A0A0H2US78 31266803
    2102 6p2l:A (1.08) BS03 GAL ? N/A G8TAF2 31324716
    2103 6p4m:A (1.802) BS02 GAL ? GO:0005576 ... Q8Z6A3 32396840
    2104 6p4m:A (1.802) BS04 GAL ? GO:0005576 ... Q8Z6A3 32396840
    2105 6p4m:B (1.802) BS01 GAL ? GO:0005576 ... Q8Z6A3 32396840
    2106 6p4m:C (1.802) BS02 GAL ? GO:0005576 ... Q8Z6A3 32396840
    2107 6p4m:D (1.802) BS01 GAL ? GO:0005576 ... Q8Z6A3 32396840
    2108 6p4m:D (1.802) BS03 GAL ? GO:0005576 ... Q8Z6A3 32396840
    2109 6p4m:E (1.802) BS03 GAL ? GO:0005576 ... Q8Z6A3 32396840
    2110 6p4q:A (1.77) BS01 GAL ? GO:0005576 ... Q8Z6A3 32396840
    2111 6phy:A (2.0) BS01 GAL 3.2.1.22 GO:0004553 ... A0A0H2URQ6 31591266
    2112 6pi0:A (2.09) BS01 GAL 3.2.1.22 GO:0004553 ... A0A0H2URQ6 31591266
    2113 6pwu:H (6.2) BS01 GAL N/A N/A N/A 31931014
    2114 6q3r:A (2.69) BS01 GAL 3.2.1.89 GO:0015926 ... P48842 31204685
    2115 6q3r:A (2.69) BS02 GAL 3.2.1.89 GO:0015926 ... P48842 31204685
    2116 6q3r:B (2.69) BS01 GAL 3.2.1.89 GO:0015926 ... P48842 31204685
    2117 6q3r:B (2.69) BS02 GAL 3.2.1.89 GO:0015926 ... P48842 31204685
    2118 6q3w:A (1.962) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    2119 6q3w:B (1.962) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    2120 6q3w:C (1.962) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    2121 6q3x:A (2.1) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2122 6q3x:B (2.1) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 33724769
    2123 6q8z:A (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    2124 6q8z:B (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    2125 6q8z:C (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    2126 6q90:A (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    2127 6q90:B (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    2128 6q90:C (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    2129 6q91:A (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    2130 6q91:B (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    2131 6q91:C (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    2132 6qje:A (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    2133 6qje:B (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    2134 6qje:C (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    2135 6qns:A (2.4) BS02 GAL 3.4.24.69 GO:0005576 ... P10844 32182233
    2136 6qub:A (1.95) BS01 GAL 3.2.1.23 GO:0004553 ... Q9F4D5 N/A
    2137 6qub:B (1.95) BS01 GAL 3.2.1.23 GO:0004553 ... Q9F4D5 N/A
    2138 6r5t:A (1.6) BS02 GAL 3.2.1.21 GO:0004553 ... Q9I311 31877028
    2139 6r5t:B (1.6) BS02 GAL 3.2.1.21 GO:0004553 ... Q9I311 31877028
    2140 6se9:A (1.965) BS01 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 31484304
    2141 6sea:A (1.869) BS02 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 31484304
    2142 6sea:A (1.869) BS03 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 31484304
    2143 6sed:A (2.233) BS01 GAL 3.2.1.23 GO:0003824 ... A0A023UGN9 31484304
    2144 6sto:A (1.5) BS01 GAL ? GO:0008061 ... A0A0A9P802 34192315
    2145 6sto:B (1.5) BS01 GAL ? GO:0008061 ... A0A0A9P802 34192315
    2146 6t2q:AAA (2.0) BS01 GAL N/A GO:0004553 ... N/A 32782292
    2147 6t2q:BBB (2.0) BS01 GAL N/A GO:0004553 ... N/A 32782292
    2148 6t2s:AAA (3.3) BS01 GAL N/A GO:0004553 ... N/A 32782292
    2149 6t2s:BBB (3.3) BS01 GAL N/A GO:0004553 ... N/A 32782292
    2150 6t2s:CCC (3.3) BS01 GAL N/A GO:0004553 ... N/A 32782292
    2151 6ter:A (1.68) BS02 GAL 2.7.1.6 GO:0004335 ... B7GUI0 32619452
    2152 6ter:B (1.68) BS02 GAL 2.7.1.6 GO:0004335 ... B7GUI0 32619452
    2153 6thy:AAA (1.75) BS01 GAL ? GO:0005576 ... Q3LRX9 31945264
    2154 6tsl:AAA (1.4) BS02 GAL ? GO:0046872 ... Q8X123 34235469
    2155 6tsm:AAA (1.4) BS02 GAL ? GO:0046872 ... Q8X123 34235469
    2156 6tsn:AAA (1.6) BS01 GAL ? GO:0046872 ... Q8X123 34235469
    2157 6tsn:AAA (1.6) BS03 GAL ? GO:0046872 ... Q8X123 34235469
    2158 6tso:AAA (2.1) BS01 GAL ? GO:0046872 ... Q8X123 34235469
    2159 6tsp:AAA (1.85) BS01 GAL ? GO:0046872 ... Q8X123 N/A
    2160 6tsp:AAA (1.85) BS03 GAL ? GO:0046872 ... Q8X123 N/A
    2161 6tsq:AAA (1.85) BS01 GAL ? GO:0046872 ... Q8X123 34235469
    2162 6tsr:AAA (1.85) BS01 GAL ? GO:0046872 ... Q8X123 34235469
    2163 6tva:A (1.74) BS01 GAL ? GO:0019031 ... A0A0A7HR51 33031770
    2164 6tvd:E (2.7) BS01 GAL ? GO:0019031 ... A0A0A7HR51 33031770
    2165 6tvf:G (2.6) BS01 GAL ? GO:0019031 ... A0A0A7HR51 33031770
    2166 6tvf:K (2.6) BS01 GAL ? GO:0019031 ... A0A0A7HR51 33031770
    2167 6ug7:H (1.52) BS02 GAL N/A N/A N/A 31831622
    2168 6ug8:H (1.89) BS02 GAL N/A N/A N/A 31831622
    2169 6ug9:B (2.74) BS01 GAL N/A N/A N/A 31831622
    2170 6ug9:K (2.74) BS01 GAL N/A N/A N/A 31831622
    2171 6ug9:L (2.74) BS01 GAL N/A N/A N/A 31831622
    2172 6ugw:A (2.0) BS02 GAL ? N/A P0DOX5 31650490
    2173 6ugy:A (2.1) BS02 GAL ? N/A P0DOX5 31650490
    2174 6v1c:A (1.55) BS01 GAL ? GO:0003674 ... Q07654 32404934
    2175 6vbg:A (2.8) BS02 GAL ? GO:0005351 ... P02920 32380514
    2176 6vbg:B (2.8) BS02 GAL ? GO:0005351 ... P02920 32380514
    2177 6vpx:P (5.0) BS01 GAL N/A N/A N/A 32348769
    2178 6vpx:Q (5.0) BS01 GAL N/A N/A N/A 32348769
    2179 6vsl:A (2.1) BS02 GAL ? N/A P0DOX5 34232070
    2180 6vsl:B (2.1) BS02 GAL ? N/A P0DOX5 34232070
    2181 6vsz:A (2.6) BS02 GAL ? N/A P0DOX5 34232070
    2182 6vsz:B (2.6) BS02 GAL ? N/A P0DOX5 34232070
    2183 6vt2:A (1.52) BS02 GAL N/A N/A N/A 32820052
    2184 6vt2:E (1.52) BS01 GAL N/A N/A N/A 32820052
    2185 6vtq:A (1.95) BS02 GAL ? GO:0005515 ... P47929 34673030
    2186 6vtq:B (1.95) BS02 GAL ? GO:0005515 ... P47929 34673030
    2187 6vts:A (1.9) BS02 GAL ? GO:0005515 ... P47929 34673030
    2188 6vts:B (1.9) BS02 GAL ? GO:0005515 ... P47929 34673030
    2189 6vu6:A (2.1) BS01 GAL N/A N/A N/A 32820052
    2190 6vu6:E (2.1) BS02 GAL N/A N/A N/A 32820052
    2191 6wmo:A (1.85) BS01 GAL 2.4.1.149 GO:0000139 ... Q9NY97 33229435
    2192 6wmo:B (1.85) BS01 GAL 2.4.1.149 GO:0000139 ... Q9NY97 33229435
    2193 6wna:H (2.4) BS02 GAL ? N/A P01861 34497355
    2194 6x3k:A (2.5) BS01 GAL ? N/A A8AWU7 35585145
    2195 6x3q:A (2.15) BS01 GAL ? N/A A8AWU7 35585145
    2196 6xac:A (1.22) BS01 GAL ? N/A A1YIY3 33824212
    2197 6xuk:L (1.42) BS01 GAL N/A N/A N/A 34119488
    2198 6y4c:A (1.7) BS02 GAL ? GO:0030246 ... P17931 32876583
    2199 6y5y:E (1.8) BS01 GAL ? GO:0005198 ... A0A024B5J2 32723915
    2200 6y5y:I (1.8) BS01 GAL ? GO:0005198 ... A0A024B5J2 32723915
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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