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BioLiP
Download all results in tab-seperated text for 29 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1rwc:A (1.9) BS01 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    2 1rwf:A (1.45) BS04 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    3 1rwg:A (1.5) BS04 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    4 1rwh:A (1.25) BS04 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    5 2fv0:A (1.91) BS04 GAD 3.2.1.179 GO:0000272 ... Q9RC92 16630576
    6 2fv1:A (1.73) BS01 GAD 3.2.1.179 GO:0000272 ... Q9RC92 16630576
    7 2fv1:B (1.73) BS01 GAD 3.2.1.179 GO:0000272 ... Q9RC92 16630576
    8 2gh4:A (1.9) BS02 GAD 3.2.1.172 GO:0003824 ... O34559 16870154
    9 5xqg:A (2.74) BS02 GAD ? GO:0046872 ... B6H7Q7 29574769
    10 5xqg:B (2.74) BS02 GAD ? GO:0046872 ... B6H7Q7 29574769
    11 5xqg:C (2.74) BS02 GAD ? GO:0046872 ... B6H7Q7 29574769
    12 5xqg:D (2.74) BS02 GAD ? GO:0046872 ... B6H7Q7 29574769
    13 5xqg:E (2.74) BS02 GAD ? GO:0046872 ... B6H7Q7 29574769
    14 5xqg:F (2.74) BS02 GAD ? GO:0046872 ... B6H7Q7 29574769
    15 5xqg:G (2.74) BS02 GAD ? GO:0046872 ... B6H7Q7 29574769
    16 5xqg:H (2.74) BS02 GAD ? GO:0046872 ... B6H7Q7 29574769
    17 5xqj:A (2.75) BS02 GAD ? GO:0046872 ... B6H7Q7 29574769
    18 5xqj:B (2.75) BS02 GAD ? GO:0046872 ... B6H7Q7 29574769
    19 5xqj:C (2.75) BS02 GAD ? GO:0046872 ... B6H7Q7 29574769
    20 5xqj:D (2.75) BS02 GAD ? GO:0046872 ... B6H7Q7 29574769
    21 5xqj:E (2.75) BS02 GAD ? GO:0046872 ... B6H7Q7 29574769
    22 5xqj:F (2.75) BS02 GAD ? GO:0046872 ... B6H7Q7 29574769
    23 5xqj:G (2.75) BS02 GAD ? GO:0046872 ... B6H7Q7 29574769
    24 5xqj:H (2.75) BS02 GAD ? GO:0046872 ... B6H7Q7 29574769
    25 5xqo:A (3.2) BS04 GAD ? GO:0046872 ... B6H7Q7 29574769
    26 5xqo:B (3.2) BS01 GAD ? GO:0046872 ... B6H7Q7 29574769
    27 5z6b:A (1.582) BS02 GAD ? N/A O31518 N/A
    28 7vew:A (1.92) BS03 GAD N/A N/A N/A 35879323
    29 7vew:B (1.92) BS03 GAD N/A N/A N/A 35879323
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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