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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1jxa:A (3.1) BS01 G6Q 2.6.1.16 GO:0004360 ... P17169 11700065
    2 1jxa:B (3.1) BS01 G6Q 2.6.1.16 GO:0004360 ... P17169 11700065
    3 1u0f:A (1.6) BS02 G6Q 5.3.1.9 GO:0001701 ... P06745 15342241
    4 1x9i:A (1.16) BS01 G6Q 5.3.1.8
    5.3.1.9    		 GO:0004347 ... Q8ZWV0 15518558
    5 1x9i:B (1.16) BS01 G6Q 5.3.1.8
    5.3.1.9    		 GO:0004347 ... Q8ZWV0 15518558
    6 2j6h:A (2.35) BS02 G6Q 2.6.1.16 GO:0004360 ... P17169 16339762
    7 2j6h:B (2.35) BS02 G6Q 2.6.1.16 GO:0004360 ... P17169 16339762
    8 2o2c:A (1.58) BS01 G6Q 5.3.1.9 GO:0004347 ... P13377 18561188
    9 2o2c:B (1.58) BS01 G6Q 5.3.1.9 GO:0004347 ... P13377 18561188
    10 2o2c:C (1.58) BS01 G6Q 5.3.1.9 GO:0004347 ... P13377 18561188
    11 3ff1:B (1.65) BS01 G6Q 5.3.1.9 GO:0004347 ... Q5HHC2 N/A
    12 3ooj:A (2.5) BS03 G6Q 2.6.1.16 GO:0004360 ... P17169 22851174
    13 3ooj:A (2.5) BS04 G6Q 2.6.1.16 GO:0004360 ... P17169 22851174
    14 3ooj:B (2.5) BS01 G6Q 2.6.1.16 GO:0004360 ... P17169 22851174
    15 3ooj:B (2.5) BS04 G6Q 2.6.1.16 GO:0004360 ... P17169 22851174
    16 3ooj:C (2.5) BS03 G6Q 2.6.1.16 GO:0004360 ... P17169 22851174
    17 3ooj:C (2.5) BS04 G6Q 2.6.1.16 GO:0004360 ... P17169 22851174
    18 3ooj:D (2.5) BS01 G6Q 2.6.1.16 GO:0004360 ... P17169 22851174
    19 3ooj:D (2.5) BS04 G6Q 2.6.1.16 GO:0004360 ... P17169 22851174
    20 3ooj:E (2.5) BS03 G6Q 2.6.1.16 GO:0004360 ... P17169 22851174
    21 3ooj:E (2.5) BS04 G6Q 2.6.1.16 GO:0004360 ... P17169 22851174
    22 3ooj:F (2.5) BS01 G6Q 2.6.1.16 GO:0004360 ... P17169 22851174
    23 3ooj:F (2.5) BS04 G6Q 2.6.1.16 GO:0004360 ... P17169 22851174
    24 3ooj:G (2.5) BS03 G6Q 2.6.1.16 GO:0004360 ... P17169 22851174
    25 3ooj:G (2.5) BS04 G6Q 2.6.1.16 GO:0004360 ... P17169 22851174
    26 3ooj:H (2.5) BS01 G6Q 2.6.1.16 GO:0004360 ... P17169 22851174
    27 3ooj:H (2.5) BS04 G6Q 2.6.1.16 GO:0004360 ... P17169 22851174
    28 3ujh:A (2.1) BS01 G6Q N/A GO:0004347 ... N/A N/A
    29 3ujh:B (2.1) BS01 G6Q N/A GO:0004347 ... N/A N/A
    30 4hjh:A (2.1) BS01 G6Q N/A GO:0000287 ... N/A N/A
    31 4hjh:B (2.1) BS01 G6Q N/A GO:0000287 ... N/A N/A
    32 6otu:A (2.25) BS01 G6Q N/A GO:0004347 ... N/A N/A
    33 6r4e:A (2.353) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    34 6r4e:B (2.353) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    35 6r4f:A (2.501) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    36 6r4f:B (2.501) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    37 6r4g:A (2.501) BS03 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    38 6r4g:B (2.501) BS03 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    39 6r4h:A (2.244) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    40 6r4h:B (2.244) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    41 6r4i:A (2.586) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    42 6r4i:B (2.586) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    43 6r4j:A (2.42) BS03 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    44 6r4j:B (2.42) BS03 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    45 6svm:A (2.481) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    46 6svm:B (2.481) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    47 6svp:A (2.531) BS03 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    48 6svp:B (2.531) BS03 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    49 6svq:A (2.717) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    50 6svq:B (2.717) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 32019926
    51 6zmj:A (2.774) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 33846315
    52 6zmj:B (2.774) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 33846315
    53 6zmk:A (2.382) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 33846315
    54 6zmk:B (2.382) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 33846315
    55 7ndl:A (2.223) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 33846315
    56 7ndl:B (2.223) BS01 G6Q 2.6.1.16 GO:0004360 ... Q06210 33846315
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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