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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a47:A (2.56) BS03 G6D 2.4.1.19 GO:0003824 ... P26827 9488711
    2 1b2y:A (3.2) BS04 G6D 3.2.1.1 GO:0003824 ... P04746 10657258
    3 1dtu:A (2.4) BS04 G6D 2.4.1.19 GO:0003824 ... P43379 10686101
    4 1kck:A (2.43) BS01 G6D 2.4.1.19 GO:0003824 ... P43379 11696539
    5 1mmy:A (1.85) BS01 G6D 5.1.3.3 GO:0003824 ... Q9ZB17 12218067
    6 1mmy:B (1.85) BS01 G6D 5.1.3.3 GO:0003824 ... Q9ZB17 12218067
    7 1ua7:A (2.21) BS04 G6D 3.2.1.1 GO:0003824 ... P00691 14617662
    8 1ukq:A (2.0) BS02 G6D 2.4.1.19 GO:0003824 ... P05618 14769878
    9 1ukq:B (2.0) BS02 G6D 2.4.1.19 GO:0003824 ... P05618 14769878
    10 2cxg:A (2.5) BS04 G6D 2.4.1.19 GO:0003824 ... P43379 7857935
    11 2dij:A (2.6) BS08 G6D 2.4.1.19 GO:0003824 ... P43379 8672460
    12 3bc9:A (1.35) BS02 G6D 3.2.1.98 GO:0004553 ... B8CZ54 18387632
    13 3bmw:A (1.6) BS04 G6D 2.4.1.19 GO:0003824 ... P26827 18422488
    14 3old:A (2.0) BS04 G6D 3.2.1.1 GO:0003824 ... P04746 21111049 PDBbind: -logKd/Ki=5.90, Ki=1254.9nM
    15 3ole:A (1.55) BS02 G6D 3.2.1.1 GO:0003824 ... P04746 21111049 PDBbind: -logKd/Ki=7.83, Ki=14.7nM
    16 3ole:A (1.55) BS04 G6D 3.2.1.1 GO:0003824 ... P04746 21111049 PDBbind: -logKd/Ki=7.83, Ki=14.7nM
    17 3olg:A (2.3) BS02 G6D 3.2.1.1 GO:0003824 ... P04746 21111049 PDBbind: -logKd/Ki=7.84, Ki=14.3nM
    18 3olg:A (2.3) BS04 G6D 3.2.1.1 GO:0003824 ... P04746 21111049 PDBbind: -logKd/Ki=7.84, Ki=14.3nM
    19 3oli:A (1.5) BS02 G6D 3.2.1.1 GO:0003824 ... P04746 21111049
    20 3oli:A (1.5) BS04 G6D 3.2.1.1 GO:0003824 ... P04746 21111049
    21 4e2o:A (2.103) BS03 G6D N/A GO:0004556 ... N/A 23683704
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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