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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2f3r:A (2.5) BS01 G5P 2.7.4.8 GO:0004385 ... P60546 16690197 MOAD: ic50=0.5uM
    PDBbind: -logKd/Ki=6.30, IC50=0.5uM
    2 2f3r:B (2.5) BS01 G5P 2.7.4.8 GO:0004385 ... P60546 16690197 MOAD: ic50=0.5uM
    3 6rpu:A (2.11) BS01 G5P 1.1.1.205 GO:0000166 ... Q756Z6 31416831
    4 6zjb:A (1.822) BS01 G5P 2.7.4.10 GO:0004017 ... Q9UIJ7 32822537
    5 6zjb:B (1.822) BS01 G5P 2.7.4.10 GO:0004017 ... Q9UIJ7 32822537
    6 6zjb:C (1.822) BS01 G5P 2.7.4.10 GO:0004017 ... Q9UIJ7 32822537
    7 6zjb:D (1.822) BS01 G5P 2.7.4.10 GO:0004017 ... Q9UIJ7 32822537
    8 6zjb:E (1.822) BS01 G5P 2.7.4.10 GO:0004017 ... Q9UIJ7 32822537
    9 6zjb:F (1.822) BS01 G5P 2.7.4.10 GO:0004017 ... Q9UIJ7 32822537
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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