Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 45 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ktw:A (2.0) BS01 G4S 3.2.1.157 GO:0000272 ... Q9F5I8 14623184
    2 1ktw:A (2.0) BS03 G4S 3.2.1.157 GO:0000272 ... Q9F5I8 14623184
    3 1ktw:A (2.0) BS05 G4S 3.2.1.157 GO:0000272 ... Q9F5I8 14623184
    4 4kmb:1 (2.0) BS03 G4S ? N/A P19999 9033386
    5 5ocq:A (1.7) BS02 G4S 3.2.1.83 GO:0004553 ... P43478 29030427
    6 5ocq:A (1.7) BS04 G4S 3.2.1.83 GO:0004553 ... P43478 29030427
    7 5ocq:B (1.7) BS02 G4S 3.2.1.83 GO:0004553 ... P43478 29030427
    8 5ocq:B (1.7) BS04 G4S 3.2.1.83 GO:0004553 ... P43478 29030427
    9 6b0j:A (2.5) BS01 G4S N/A N/A N/A 29681469
    10 6b0j:A (2.5) BS03 G4S N/A N/A N/A 29681469
    11 6b0j:A (2.5) BS04 G4S N/A N/A N/A 29681469
    12 6b0j:B (2.5) BS01 G4S N/A N/A N/A 29681469
    13 6b0j:B (2.5) BS03 G4S N/A N/A N/A 29681469
    14 6b0j:B (2.5) BS04 G4S N/A N/A N/A 29681469
    15 6b0j:C (2.5) BS01 G4S N/A N/A N/A 29681469
    16 6b0j:C (2.5) BS03 G4S N/A N/A N/A 29681469
    17 6b0k:A (2.15) BS03 G4S N/A N/A N/A 29681469
    18 6b0k:A (2.15) BS05 G4S N/A N/A N/A 29681469
    19 6b0k:B (2.15) BS03 G4S N/A N/A N/A 29681469
    20 6b0k:B (2.15) BS05 G4S N/A N/A N/A 29681469
    21 6b0k:C (2.15) BS03 G4S N/A N/A N/A 29681469
    22 6b0k:C (2.15) BS05 G4S N/A N/A N/A 29681469
    23 6b1v:A (2.84) BS02 G4S N/A N/A N/A 29681469
    24 6b1v:A (2.84) BS04 G4S N/A N/A N/A 29681469
    25 6b1v:B (2.84) BS02 G4S N/A N/A N/A 29681469
    26 6b1v:C (2.84) BS02 G4S N/A N/A N/A 29681469
    27 6psm:A (1.95) BS02 G4S N/A N/A N/A 31886414
    28 6psm:B (1.95) BS02 G4S N/A N/A N/A 31886414
    29 6psm:C (1.95) BS02 G4S N/A N/A N/A 31886414
    30 6psm:D (1.95) BS02 G4S N/A N/A N/A 31886414
    31 6psm:E (1.95) BS02 G4S N/A N/A N/A 31886414
    32 6psm:F (1.95) BS02 G4S N/A N/A N/A 31886414
    33 6pso:A (2.0) BS01 G4S N/A N/A N/A 31886414
    34 6pso:B (2.0) BS01 G4S N/A N/A N/A 31886414
    35 6pso:B (2.0) BS02 G4S N/A N/A N/A 31886414
    36 6pt6:A (2.25) BS01 G4S N/A N/A N/A 31886414
    37 6pt6:B (2.25) BS01 G4S N/A N/A N/A 31886414
    38 6pt9:A (1.66) BS01 G4S N/A N/A N/A 31886414
    39 6ptk:A (1.75) BS01 G4S N/A N/A N/A 31886414
    40 6ptk:B (1.75) BS05 G4S N/A N/A N/A 31886414
    41 6ptk:C (1.75) BS05 G4S N/A N/A N/A 31886414
    42 6ptk:D (1.75) BS05 G4S N/A N/A N/A 31886414
    43 7oza:AAA (1.5) BS01 G4S ? GO:0004065 ... Q8A171 35710619
    44 7oza:CCC (1.5) BS01 G4S ? GO:0004065 ... Q8A171 35710619
    45 9int:A (1.56) BS03 G4S N/A GO:0004553 ... A0A1B1Y771 39214858
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218