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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1mr3:F (1.6) BS01 G3D ? GO:0003924 ... P19146 11535602
    2 1r8q:A (1.86) BS01 G3D 3.6.5.2 GO:0000139 ... P84080 14654833
    3 1r8q:B (1.86) BS01 G3D 3.6.5.2 GO:0000139 ... P84080 14654833
    4 1zj6:A (2.0) BS01 G3D ? GO:0003924 ... Q9Y689 15896705
    5 2hxs:A (1.1) BS01 G3D ? GO:0003924 ... P51157 N/A
    6 3kb2:A (2.2) BS01 G3D ? GO:0004798 ... O31896 N/A
    7 3kb2:B (2.2) BS01 G3D ? GO:0004798 ... O31896 N/A
    8 4c0a:C (3.3) BS01 G3D 3.6.5.2 GO:0000139 ... P84080 24058294
    9 4c0a:D (3.3) BS01 G3D 3.6.5.2 GO:0000139 ... P84080 24058294
    10 4c0a:G (3.3) BS01 G3D 3.6.5.2 GO:0000139 ... P84080 24058294
    11 4c0a:H (3.3) BS01 G3D 3.6.5.2 GO:0000139 ... P84080 24058294
    12 7rll:A (1.9) BS01 G3D ? GO:0003924 ... A0A1D8PJ64 N/A
    13 7rll:B (1.9) BS01 G3D ? GO:0003924 ... A0A1D8PJ64 N/A
    14 8sdw:A (1.75) BS01 G3D 3.6.5.2 GO:0000139 ... P84077 38574162
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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