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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 221 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1w58:1 (2.5) BS01 G2P ? GO:0000917 ... Q57816 15558053
    2 1w5f:A (2.0) BS01 G2P ? GO:0003924 ... O08398 15558053
    3 1w5f:B (2.0) BS01 G2P ? GO:0003924 ... O08398 15558053
    4 1y77:A (4.5) BS05 G2P 2.7.7.6 GO:0000428 ... P04050 15610738
    5 1y77:B (4.5) BS04 G2P 2.7.7.6 GO:0000428 ... P08518 15610738
    6 2bz0:A (2.6) BS03 G2P 3.5.4.25 GO:0000287 ... P0A7I7 16115872
    7 2bz0:B (2.6) BS02 G2P 3.5.4.25 GO:0000287 ... P0A7I7 16115872
    8 3j6e:B (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    9 3j6e:D (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    10 3j6e:F (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    11 3j6e:H (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    12 3j6e:J (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    13 3j6e:L (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    14 3j6e:N (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    15 3j6e:P (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    16 3j6e:R (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    17 3j6h:B (8.1) BS02 G2P ? GO:0000226 ... P02554 25777528
    18 3jal:B (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    19 3jal:D (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    20 3jal:F (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    21 3jal:G (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    22 3jal:H (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    23 3jal:I (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    24 3jao:B (23.0) BS01 G2P ? GO:0000226 ... A0A0M3KKT2 26211611
    25 3jat:B (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    26 3jat:D (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    27 3jat:F (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    28 3jat:G (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    29 3jat:H (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    30 3jat:I (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    31 3q23:A (1.8) BS02 G2P 2.7.7.6 N/A Q859P9 21321236
    32 3q23:A (1.8) BS06 G2P 2.7.7.6 N/A Q859P9 21321236
    33 3q23:B (1.8) BS02 G2P 2.7.7.6 N/A Q859P9 21321236
    34 3q23:B (1.8) BS03 G2P 2.7.7.6 N/A Q859P9 21321236
    35 3ryh:B (2.8) BS01 G2P ? GO:0000226 ... D0VWY9 21787788
    36 3ryh:D (2.8) BS01 G2P ? GO:0000226 ... D0VWY9 21787788
    37 4a3j:A (3.7) BS07 G2P 2.7.7.6 GO:0000428 ... P04050 22056778
    38 4a3j:B (3.7) BS04 G2P 2.7.7.6 GO:0000428 ... P08518 22056778
    39 4txz:A (2.8) BS03 G2P 2.7.7.- GO:0005524 ... Q9KVG7 25131990
    40 4txz:B (2.8) BS03 G2P 2.7.7.- GO:0005524 ... Q9KVG7 25131990
    41 4y7n:A (3.3) BS06 G2P 2.7.7.6 GO:0000428 ... P04050 26123024
    42 5jco:C (4.0) BS01 G2P ? GO:0000226 ... Q13509 27129203
    43 5jco:D (4.0) BS01 G2P ? GO:0000226 ... Q13509 27129203
    44 5jco:I (4.0) BS01 G2P ? GO:0000226 ... Q13509 27129203
    45 5jco:J (4.0) BS01 G2P ? GO:0000226 ... Q13509 27129203
    46 5jco:K (4.0) BS01 G2P ? GO:0000226 ... Q13509 27129203
    47 5jco:L (4.0) BS01 G2P ? GO:0000226 ... Q13509 27129203
    48 5n5n:A (4.2) BS01 G2P ? GO:0000226 ... P07437 29021343
    49 5n5n:B (4.2) BS01 G2P ? GO:0000226 ... P07437 29021343
    50 5n5n:C (4.2) BS01 G2P ? GO:0000226 ... P07437 29021343
    51 5n5n:D (4.2) BS01 G2P ? GO:0000226 ... P07437 29021343
    52 5n5n:E (4.2) BS01 G2P ? GO:0000226 ... P07437 29021343
    53 5n5n:F (4.2) BS01 G2P ? GO:0000226 ... P07437 29021343
    54 5xxx:B (6.43) BS02 G2P ? GO:0000226 ... P02554 30297389
    55 5xxx:D (6.43) BS02 G2P ? GO:0000226 ... P02554 30297389
    56 5xxx:F (6.43) BS02 G2P ? GO:0000226 ... P02554 30297389
    57 5xxx:H (6.43) BS02 G2P ? GO:0000226 ... P02554 30297389
    58 5xxx:J (6.43) BS02 G2P ? GO:0000226 ... P02554 30297389
    59 5xxx:L (6.43) BS02 G2P ? GO:0000226 ... P02554 30297389
    60 5xxx:N (6.43) BS02 G2P ? GO:0000226 ... P02554 30297389
    61 5xxx:P (6.43) BS02 G2P ? GO:0000226 ... P02554 30297389
    62 5xxx:R (6.43) BS02 G2P ? GO:0000226 ... P02554 30297389
    63 6bjc:B (3.3) BS01 G2P ? GO:0000226 ... P02554 29120325
    64 6bjc:D (3.3) BS01 G2P ? GO:0000226 ... P02554 29120325
    65 6bjc:F (3.3) BS01 G2P ? GO:0000226 ... P02554 29120325
    66 6bjc:G (3.3) BS01 G2P ? GO:0000226 ... P02554 29120325
    67 6bjc:H (3.3) BS01 G2P ? GO:0000226 ... P02554 29120325
    68 6bjc:I (3.3) BS01 G2P ? GO:0000226 ... P02554 29120325
    69 6dpu:B (3.1) BS01 G2P ? GO:0000226 ... P02554 29915050
    70 6dpu:D (3.1) BS01 G2P ? GO:0000226 ... P02554 29915050
    71 6dpu:F (3.1) BS01 G2P ? GO:0000226 ... P02554 29915050
    72 6dpu:G (3.1) BS01 G2P ? GO:0000226 ... P02554 29915050
    73 6dpu:H (3.1) BS01 G2P ? GO:0000226 ... P02554 29915050
    74 6dpu:I (3.1) BS01 G2P ? GO:0000226 ... P02554 29915050
    75 6e7b:B (3.5) BS01 G2P ? GO:0000226 ... Q13509 30245156
    76 6e7c:B (3.65) BS01 G2P ? GO:0000226 ... Q9BVA1 30245156
    77 6evw:B (4.4) BS01 G2P ? GO:0000226 ... P02554 29967541
    78 6evw:D (4.4) BS01 G2P ? GO:0000226 ... P02554 29967541
    79 6evw:F (4.4) BS01 G2P ? GO:0000226 ... P02554 29967541
    80 6evw:G (4.4) BS01 G2P ? GO:0000226 ... P02554 29967541
    81 6evw:H (4.4) BS01 G2P ? GO:0000226 ... P02554 29967541
    82 6evw:I (4.4) BS01 G2P ? GO:0000226 ... P02554 29967541
    83 6hko:B (3.42) BS05 G2P 2.7.7.6 GO:0000428 ... P22138 30913026
    84 6hlq:A (3.18) BS06 G2P 2.7.7.6 GO:0000428 ... P10964 30913026
    85 6hlq:B (3.18) BS05 G2P 2.7.7.6 GO:0000428 ... P22138 30913026
    86 6hlr:B (3.18) BS05 G2P 2.7.7.6 GO:0000428 ... P22138 30913026
    87 6i2i:B (3.6) BS01 G2P ? GO:0000226 ... P07437 31409757
    88 6jt2:A (3.8) BS01 G2P 4.6.1.2 GO:0004383 ... Q02108 31514202
    89 6jt2:B (3.8) BS01 G2P 4.6.1.2 GO:0004016 ... Q02153 31514202
    90 6ojq:B (3.67) BS01 G2P ? GO:0000226 ... Q6B856 N/A
    91 6ta3:A (3.8) BS01 G2P 3.6.5.- GO:0000226 ... Q2XVP4 32084356
    92 6ta3:B (3.8) BS01 G2P ? GO:0000226 ... P02554 32084356
    93 6ta4:B (6.1) BS01 G2P ? GO:0000226 ... P02554 32084356
    94 6tiw:A (3.8) BS01 G2P 3.6.5.- GO:0000226 ... Q2XVP4 32084356
    95 6tiw:B (3.8) BS01 G2P ? GO:0000226 ... P02554 32084356
    96 6tiy:B (2.293) BS01 G2P ? GO:0000226 ... Q24560 33544140
    97 6tiy:D (2.293) BS01 G2P ? GO:0000226 ... Q24560 33544140
    98 6usr:A (2.93) BS05 G2P 2.7.7.49 GO:0000781 ... Q0QHL8 32501800
    99 6vcn:A (1.9) BS01 G2P 3.6.1.- GO:0000287 ... P0A776 31960065
    100 6wsl:B (3.1) BS01 G2P ? GO:0000226 ... Q13509 32773040
    101 6wsl:F (3.1) BS01 G2P ? GO:0000226 ... Q13509 32773040
    102 7d9r:A (3.7) BS01 G2P 4.6.1.2 GO:0004383 ... Q02108 34535643
    103 7d9r:B (3.7) BS01 G2P 4.6.1.2 GO:0004016 ... Q02153 34535643
    104 7d9s:A (3.9) BS03 G2P 4.6.1.2 GO:0004383 ... Q02108 34535643
    105 7d9s:B (3.9) BS03 G2P 4.6.1.2 GO:0004016 ... Q02153 34535643
    106 7d9u:A (3.8) BS01 G2P 4.6.1.2 GO:0004383 ... Q02108 34535643
    107 7d9u:B (3.8) BS01 G2P 4.6.1.2 GO:0004016 ... Q02153 34535643
    108 7dmz:C (4.3) BS02 G2P ? GO:0000226 ... P02554 N/A
    109 7dmz:E (4.3) BS02 G2P ? GO:0000226 ... P02554 N/A
    110 7dmz:F (4.3) BS02 G2P ? GO:0000226 ... P02554 N/A
    111 7dn0:E (3.5) BS01 G2P ? GO:0000226 ... P02554 N/A
    112 7dn0:F (3.5) BS01 G2P ? GO:0000226 ... P02554 N/A
    113 7e6g:A (2.65) BS02 G2P 2.7.7.65 GO:0005886 ... A0A069QEY1 34498587
    114 7nb8:B (4.4) BS01 G2P ? GO:0000226 ... P02554 34375637
    115 7nba:B (4.0) BS01 G2P ? GO:0000226 ... P02554 34375637
    116 7quq:A (2.6) BS01 G2P ? GO:0000226 ... A0A7W7YIU5 36989372
    117 7quq:B (2.6) BS01 G2P ? GO:0000226 ... A0A7W7YJ10 36989372
    118 7quq:C (2.6) BS01 G2P ? GO:0000226 ... A0A7W7YIU5 36989372
    119 7quq:D (2.6) BS01 G2P ? GO:0000226 ... A0A7W7YJ10 36989372
    120 7quq:D (2.6) BS02 G2P ? GO:0000226 ... A0A7W7YJ10 36989372
    121 7quq:E (2.6) BS01 G2P ? GO:0000226 ... A0A7W7YIU5 36989372
    122 7quq:F (2.6) BS01 G2P ? GO:0000226 ... A0A7W7YJ10 36989372
    123 7rs6:B (4.1) BS01 G2P ? GO:0000226 ... P02554 N/A
    124 7rs6:D (4.1) BS01 G2P ? GO:0000226 ... P02554 N/A
    125 7rs6:F (4.1) BS01 G2P ? GO:0000226 ... P02554 N/A
    126 7rs6:H (4.1) BS01 G2P ? GO:0000226 ... P02554 N/A
    127 7rs6:J (4.1) BS01 G2P ? GO:0000226 ... P02554 N/A
    128 7rs6:M (4.1) BS01 G2P ? GO:0000226 ... P02554 N/A
    129 7rs6:O (4.1) BS01 G2P ? GO:0000226 ... P02554 N/A
    130 7rs6:Q (4.1) BS01 G2P ? GO:0000226 ... P02554 N/A
    131 7rs6:S (4.1) BS01 G2P ? GO:0000226 ... P02554 N/A
    132 7rx0:B (3.89) BS02 G2P ? GO:0000226 ... P02554 35725768
    133 7ysn:B (3.5) BS01 G2P ? GO:0000226 ... P02554 37749104
    134 7z2a:H (4.3) BS01 G2P ? GO:0000226 ... P02554 36384964
    135 7z2b:H (3.3) BS01 G2P ? GO:0000226 ... P02554 36384964
    136 7z2c:H (4.1) BS01 G2P ? GO:0000226 ... P02554 36384964
    137 7zcw:B (3.6) BS01 G2P ? GO:0000226 ... Q9BVA1 36512346
    138 7zcw:F (3.6) BS01 G2P ? GO:0000226 ... Q9BVA1 36512346
    139 7zcw:G (3.6) BS01 G2P ? GO:0000226 ... Q9BVA1 36512346
    140 7zcw:H (3.6) BS01 G2P ? GO:0000226 ... Q9BVA1 36512346
    141 8bf5:B (2.96) BS04 G2P 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    142 8ej3:C (3.13) BS04 G2P 2.7.7.6 GO:0000428 ... P9WGY9 36745813
    143 8exy:C (3.2) BS04 G2P 2.7.7.6 GO:0000428 ... P9WGY9 36745813
    144 8hbf:A (3.1) BS01 G2P 4.6.1.2 GO:0004383 ... Q02108 36972843
    145 8hbf:B (3.1) BS01 G2P 4.6.1.2 GO:0004016 ... Q02153 36972843
    146 8hbh:A (3.1) BS03 G2P 4.6.1.2 GO:0004383 ... Q02108 36972843
    147 8hbh:B (3.1) BS01 G2P 4.6.1.2 GO:0004016 ... Q02153 36972843
    148 8ibn:A (3.03) BS01 G2P ? GO:0000917 ... W9BCK7 37429870
    149 8ibn:B (3.03) BS01 G2P ? GO:0000917 ... W9BCK7 37429870
    150 8ibn:C (3.03) BS01 G2P ? GO:0000917 ... W9BCK7 37429870
    151 8ibn:D (3.03) BS01 G2P ? GO:0000917 ... W9BCK7 37429870
    152 8ixa:J (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    153 8ixa:K (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    154 8ixa:L (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    155 8ixa:M (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    156 8ixa:N (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    157 8ixa:O (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    158 8ixa:P (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    159 8ixa:Q (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    160 8ixa:R (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    161 8ixb:Q (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    162 8ixb:U (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    163 8ixb:V (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    164 8ixb:W (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    165 8ixd:J (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    166 8ixd:K (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    167 8ixd:L (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    168 8ixd:M (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    169 8ixd:N (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    170 8ixd:O (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    171 8ixd:P (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    172 8ixd:Q (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    173 8ixd:R (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    174 8ixe:R (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    175 8ixe:W (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    176 8ixe:Z (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    177 8ixe:a (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    178 8ixf:J (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    179 8ixf:K (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    180 8ixf:L (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    181 8ixf:M (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    182 8ixf:N (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    183 8ixf:O (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    184 8ixf:P (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    185 8ixf:Q (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    186 8ixf:R (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    187 8ixg:R (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    188 8ixg:W (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    189 8ixg:Z (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    190 8ixg:a (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    191 8odp:A (2.3) BS03 G2P 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    192 8odp:C (2.3) BS03 G2P 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    193 8odp:E (2.3) BS03 G2P 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    194 8odp:G (2.3) BS03 G2P 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    195 8qz8:B (3.13) BS03 G2P ? GO:0001172 ... A0A1Y9SHW4 38066000
    196 8t42:A (3.6) BS04 G2P 3.6.5.- GO:0000226 ... P68363 38658656
    197 8t42:B (3.6) BS02 G2P ? GO:0000226 ... P07437 38658656
    198 8t42:E (3.6) BS01 G2P ? GO:0000226 ... P07437 38658656
    199 8u3z:B (3.6) BS01 G2P ? GO:0000226 ... P07437 38658656
    200 8u3z:E (3.6) BS01 G2P ? GO:0000226 ... P07437 38658656
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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