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BioLiP
Download all results in tab-seperated text for 43 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1e0v:A (1.7) BS01 G2F 3.2.1.8 GO:0004553 ... P26514 10930426
    2 1e4i:A (2.0) BS01 G2F 3.2.1.21 GO:0004553 ... P22073 9849940
    3 1e70:M (1.65) BS01 G2F 3.2.1.147 GO:0004553 ... P29736 10978344
    4 1e73:M (1.5) BS02 G2F 3.2.1.147 GO:0004553 ... P29736 10978344
    5 1exp:A (1.8) BS01 G2F 3.2.1.8
    3.2.1.91    		 GO:0004553 ... P07986 8564541
    6 1h11:A (1.08) BS01 G2F 3.2.1.4 GO:0000272 ... O85465 12595701
    7 1h6m:A (1.64) BS01 G2F 3.2.1.17 GO:0003796 ... P00698 11518970
    8 1iew:A (2.55) BS01 G2F 3.2.1.21 GO:0004553 ... Q9XEI3 11709165 PDBbind: -logKd/Ki=4.59, Ki=25.50uM
    9 1oin:A (2.15) BS01 G2F 3.2.1.21 GO:0004553 ... Q08638 14624580
    10 1oin:B (2.15) BS01 G2F 3.2.1.21 GO:0004553 ... Q08638 14624580
    11 1qi2:A (1.75) BS01 G2F 3.2.1.4 GO:0000272 ... O85465 10731432
    12 1uws:A (1.95) BS01 G2F 3.2.1.23 GO:0004553 ... P22498 15147194
    13 1uws:B (1.95) BS01 G2F 3.2.1.23 GO:0004553 ... P22498 15147194
    14 1uyq:A (2.2) BS01 G2F 3.2.1.21 GO:0004553 ... P22073 N/A
    15 2cit:A (1.4) BS01 G2F 3.2.1.4 GO:0004553 ... P16218 16823793
    16 2jie:A (2.3) BS01 G2F 3.2.1.21 GO:0004553 ... P22505 17585934
    17 2pb1:A (1.9) BS01 G2F 2.4.1.-
    3.2.1.58    		 GO:0000272 ... P29717 N/A
    18 2rgm:A (1.55) BS01 G2F 3.2.1.21 GO:0004553 ... Q75I93 18308333
    19 2rgm:B (1.55) BS02 G2F 3.2.1.21 GO:0004553 ... Q75I93 18308333
    20 3ahv:A (1.89) BS01 G2F 3.2.1.21 GO:0004553 ... Q75I93 20884352
    21 3ahv:B (1.89) BS02 G2F 3.2.1.21 GO:0004553 ... Q75I93 20884352
    22 3air:A (2.0) BS01 G2F 3.2.1.182
    3.2.1.21    		 GO:0004553 ... Q1XH05 21421370
    23 3aiw:A (2.4) BS02 G2F 3.2.1.182
    3.2.1.21    		 GO:0004553 ... Q9FYS3 21421370
    24 3gnr:A (1.81) BS01 G2F 3.2.1.21 GO:0004553 ... Q8L7J2 19587102
    25 3ptm:A (2.4) BS01 G2F 3.2.1.21 GO:0004338 ... B8AVF0 21521631
    26 3ptm:B (2.4) BS02 G2F 3.2.1.21 GO:0004338 ... B8AVF0 21521631
    27 4c4d:A (1.32) BS03 G2F 3.2.1.91 GO:0004553 ... P62694 24341799
    28 4mof:A (1.85) BS02 G2F 1.1.3.10 GO:0000166 ... Q7ZA32 24466218
    29 4moj:A (2.0) BS02 G2F 1.1.3.10 GO:0000166 ... Q7ZA32 24466218
    30 4moj:B (2.0) BS02 G2F 1.1.3.10 GO:0000166 ... Q7ZA32 24466218
    31 4moj:C (2.0) BS02 G2F 1.1.3.10 GO:0000166 ... Q7ZA32 24466218
    32 4moj:D (2.0) BS02 G2F 1.1.3.10 GO:0000166 ... Q7ZA32 24466218
    33 4ptw:A (2.0) BS01 G2F 3.2.1.21 GO:0004553 ... B8CYA8 25173693
    34 4ptw:B (2.0) BS01 G2F 3.2.1.21 GO:0004553 ... B8CYA8 25173693
    35 5a3h:A (1.82) BS01 G2F 3.2.1.4 GO:0000272 ... O85465 9718293
    36 5bx2:A (1.61) BS01 G2F 3.2.1.45 GO:0004348 ... F6BL85 27115290
    37 5vqe:A (1.889) BS01 G2F ? GO:0004553 ... A0A2R2JFS5 29317495 PDBbind: -logKd/Ki=1.49, Kd=32mM
    38 6a3h:A (1.68) BS01 G2F 3.2.1.4 GO:0000272 ... O85465 9718293
    39 6haa:A (1.7) BS01 G2F 3.2.1.4 GO:0000272 ... B3PD52 30387796
    40 6haa:B (1.7) BS01 G2F 3.2.1.4 GO:0000272 ... B3PD52 30387796
    41 7kr6:AAA (1.56) BS01 G2F ? GO:0004553 ... A0A1Y4PXW9 33988963
    42 7kr6:BBB (1.56) BS01 G2F ? GO:0004553 ... A0A1Y4PXW9 33988963
    43 8i5s:A (1.45) BS01 G2F 3.2.1.45 GO:0004348 ... F6BL85 37180965
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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