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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 164 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1d4e:A (2.8) BS06 FUM 1.3.2.4 GO:0010181 ... P83223 10581551
    2 1e39:A (1.8) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 10978153
    3 1gz3:A (2.3) BS04 FUM 1.1.1.38 GO:0004470 ... P23368 12121650
    4 1gz3:B (2.3) BS04 FUM 1.1.1.38 GO:0004470 ... P23368 12121650
    5 1gz3:C (2.3) BS04 FUM 1.1.1.38 GO:0004470 ... P23368 12121650
    6 1gz3:D (2.3) BS04 FUM 1.1.1.38 GO:0004470 ... P23368 12121650
    7 1gz4:A (2.2) BS05 FUM 1.1.1.38 GO:0004470 ... P23368 12121650
    8 1gz4:A (2.2) BS06 FUM 1.1.1.38 GO:0004470 ... P23368 12121650
    9 1gz4:B (2.2) BS01 FUM 1.1.1.38 GO:0004470 ... P23368 12121650
    10 1gz4:B (2.2) BS06 FUM 1.1.1.38 GO:0004470 ... P23368 12121650
    11 1gz4:C (2.2) BS05 FUM 1.1.1.38 GO:0004470 ... P23368 12121650
    12 1gz4:C (2.2) BS06 FUM 1.1.1.38 GO:0004470 ... P23368 12121650
    13 1gz4:D (2.2) BS05 FUM 1.1.1.38 GO:0004470 ... P23368 12121650
    14 1jrx:A (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 11591148
    15 1jrx:B (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 11591148
    16 1jry:A (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 11591148
    17 1jry:B (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 11591148
    18 1jrz:A (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 11591148
    19 1jrz:B (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 11591148
    20 1kss:A (1.8) BS07 FUM 1.3.2.4 GO:0008202 ... P0C278 12093271
    21 1ksu:A (2.0) BS07 FUM 1.3.2.4 GO:0008202 ... P0C278 12093271
    22 1ksu:B (2.0) BS07 FUM 1.3.2.4 GO:0008202 ... P0C278 12093271
    23 1lj1:A (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 12356299
    24 1lj1:B (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 12356299
    25 1m64:A (1.8) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 12356299
    26 1m64:B (1.8) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 12356299
    27 1p2e:A (2.2) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 14609326
    28 1pj2:A (2.3) BS05 FUM 1.1.1.38 GO:0004470 ... P23368 12962632
    29 1pj2:B (2.3) BS05 FUM 1.1.1.38 GO:0004470 ... P23368 12962632
    30 1pj2:C (2.3) BS05 FUM 1.1.1.38 GO:0004470 ... P23368 12962632
    31 1pj2:D (2.3) BS06 FUM 1.1.1.38 GO:0004470 ... P23368 12962632
    32 1pj3:A (2.1) BS05 FUM 1.1.1.38 GO:0004470 ... P23368 12962632
    33 1pj3:B (2.1) BS05 FUM 1.1.1.38 GO:0004470 ... P23368 12962632
    34 1pj3:C (2.1) BS05 FUM 1.1.1.38 GO:0004470 ... P23368 12962632
    35 1pj3:D (2.1) BS05 FUM 1.1.1.38 GO:0004470 ... P23368 12962632
    36 1pj4:A (2.3) BS04 FUM 1.1.1.38 GO:0004470 ... P23368 12962632
    37 1pj4:B (2.3) BS04 FUM 1.1.1.38 GO:0004470 ... P23368 12962632
    38 1pj4:C (2.3) BS04 FUM 1.1.1.38 GO:0004470 ... P23368 12962632
    39 1pj4:D (2.3) BS04 FUM 1.1.1.38 GO:0004470 ... P23368 12962632
    40 1qco:A (1.9) BS02 FUM 3.7.1.2 GO:0003824 ... P35505 10508789
    41 1qco:B (1.9) BS02 FUM 3.7.1.2 GO:0003824 ... P35505 10508789
    42 1qlb:A (2.33) BS02 FUM 1.3.5.1 GO:0000104 ... P17412 10586875
    43 1qlb:D (2.33) BS02 FUM 1.3.5.1 GO:0000104 ... P17412 10586875
    44 1uxg:A (1.9) BS02 FUM 1.1.1.37 GO:0003824 ... P80040 15321717
    45 1uxg:B (1.9) BS02 FUM 1.1.1.37 GO:0003824 ... P80040 15321717
    46 1uxh:A (2.1) BS02 FUM 1.1.1.37 GO:0003824 ... P80040 15321717
    47 1uxh:B (2.1) BS02 FUM 1.1.1.37 GO:0003824 ... P80040 15321717
    48 1uxi:A (2.1) BS02 FUM 1.1.1.37 GO:0003824 ... P80040 15321717
    49 1uxi:B (2.1) BS02 FUM 1.1.1.37 GO:0003824 ... P80040 15321717
    50 2b7r:A (1.7) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 16699170
    51 2b7s:A (2.12) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 16699170
    52 2bs2:A (1.78) BS02 FUM 1.3.5.1 GO:0000104 ... P17412 17024183
    53 2bs2:D (1.78) BS02 FUM 1.3.5.1 GO:0000104 ... P17412 17024183
    54 2cgo:A (2.3) BS02 FUM 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 17135241
    55 2e6d:A (1.94) BS02 FUM 1.3.98.1 GO:0004152 ... Q4D3W2 18808149
    56 2e6d:B (1.94) BS02 FUM 1.3.98.1 GO:0004152 ... Q4D3W2 18808149
    57 2eeo:B (1.6) BS03 FUM 4.1.1.11 GO:0004068 ... Q5SKN7 N/A
    58 2ptq:A (2.0) BS01 FUM 4.3.2.2 GO:0003824 ... P0AB89 17531264
    59 2ptq:A (2.0) BS03 FUM 4.3.2.2 GO:0003824 ... P0AB89 17531264
    60 2ptq:B (2.0) BS01 FUM 4.3.2.2 GO:0003824 ... P0AB89 17531264
    61 2ptq:B (2.0) BS03 FUM 4.3.2.2 GO:0003824 ... P0AB89 17531264
    62 2vd6:A (2.0) BS02 FUM 4.3.2.2 GO:0001666 ... P30566 N/A
    63 2vd6:C (2.0) BS03 FUM 4.3.2.2 GO:0001666 ... P30566 N/A
    64 2vd6:D (2.0) BS02 FUM 4.3.2.2 GO:0001666 ... P30566 N/A
    65 3p4p:A (2.8) BS02 FUM 1.3.5.1 GO:0000104 ... P00363 21098488
    66 3r11:B (2.0) BS01 FUM 5.1.1.- GO:0000287 ... B0TZW0 22392983
    67 3sn0:A (1.8) BS02 FUM ? GO:0003824 ... Q13PB7 N/A
    68 3tq0:A (1.9) BS02 FUM 1.3.98.1 GO:0000166 ... Q4QEW7 22542640
    69 3tq0:B (1.9) BS02 FUM 1.3.98.1 GO:0000166 ... Q4QEW7 22542640
    70 3vrb:A (2.91) BS01 FUM 1.3.5.1 GO:0000166 ... Q33862 22577165
    71 3vrb:E (2.91) BS01 FUM 1.3.5.1 GO:0000166 ... Q33862 22577165
    72 4apb:A (1.94) BS01 FUM 4.2.1.2 GO:0003824 ... P9WN93 22561013
    73 4apb:A (1.94) BS02 FUM 4.2.1.2 GO:0003824 ... P9WN93 22561013
    74 4apb:A (1.94) BS03 FUM 4.2.1.2 GO:0003824 ... P9WN93 22561013
    75 4apb:B (1.94) BS01 FUM 4.2.1.2 GO:0003824 ... P9WN93 22561013
    76 4apb:B (1.94) BS02 FUM 4.2.1.2 GO:0003824 ... P9WN93 22561013
    77 4apb:B (1.94) BS03 FUM 4.2.1.2 GO:0003824 ... P9WN93 22561013
    78 4apb:C (1.94) BS01 FUM 4.2.1.2 GO:0003824 ... P9WN93 22561013
    79 4apb:C (1.94) BS02 FUM 4.2.1.2 GO:0003824 ... P9WN93 22561013
    80 4apb:C (1.94) BS03 FUM 4.2.1.2 GO:0003824 ... P9WN93 22561013
    81 4apb:D (1.94) BS01 FUM 4.2.1.2 GO:0003824 ... P9WN93 22561013
    82 4apb:D (1.94) BS02 FUM 4.2.1.2 GO:0003824 ... P9WN93 22561013
    83 4apb:D (1.94) BS03 FUM 4.2.1.2 GO:0003824 ... P9WN93 22561013
    84 5bwd:A (2.0) BS01 FUM 4.1.99.11 GO:0003824 ... O68395 26224635
    85 5bwe:A (3.3) BS01 FUM 4.1.99.11 GO:0003824 ... O68395 26224635
    86 5bwe:D (3.3) BS01 FUM 4.1.99.11 GO:0003824 ... O68395 26224635
    87 5fxw:A (2.09) BS03 FUM 1.14.11.68 N/A O14607 N/A
    88 5fxw:B (2.09) BS03 FUM 1.14.11.68 N/A O14607 N/A
    89 5fy4:A (2.1) BS04 FUM 1.14.11.67 N/A Q9UGL1 N/A
    90 5fy5:A (2.47) BS04 FUM 1.14.11.67 N/A Q9UGL1 N/A
    91 5fyc:A (2.261) BS02 FUM 1.14.11.66
    1.14.11.69    		 N/A O75164 N/A
    92 5fyc:B (2.261) BS02 FUM 1.14.11.66
    1.14.11.69    		 N/A O75164 N/A
    93 5fyh:A (2.348) BS02 FUM 1.14.11.66
    1.14.11.69    		 N/A O75164 N/A
    94 5fyh:B (2.348) BS02 FUM 1.14.11.66
    1.14.11.69    		 N/A O75164 N/A
    95 5hw2:A (2.054) BS01 FUM 4.3.2.2 GO:0000166 ... Q5NIQ1 N/A
    96 5hw2:C (2.054) BS01 FUM 4.3.2.2 GO:0000166 ... Q5NIQ1 N/A
    97 5mst:A (1.72) BS03 FUM 1.2.1.- GO:0001676 ... E5XP76 28719588
    98 5mst:B (1.72) BS03 FUM 1.2.1.- GO:0001676 ... E5XP76 28719588
    99 5nx9:A (2.3) BS02 FUM 4.3.2.2 GO:0000166 ... A0A384E0N4 30573755
    100 5nx9:B (2.3) BS01 FUM 4.3.2.2 GO:0000166 ... A0A384E0N4 30573755
    101 5nx9:C (2.3) BS03 FUM 4.3.2.2 GO:0000166 ... A0A384E0N4 30573755
    102 5nx9:D (2.3) BS02 FUM 4.3.2.2 GO:0000166 ... A0A384E0N4 30573755
    103 5nx9:D (2.3) BS05 FUM 4.3.2.2 GO:0000166 ... A0A384E0N4 30573755
    104 5nxa:B (2.4) BS03 FUM 4.3.2.2 GO:0000166 ... A0A384E0N4 30573755
    105 5nxa:C (2.4) BS02 FUM 4.3.2.2 GO:0000166 ... A0A384E0N4 30573755
    106 5nxa:D (2.4) BS02 FUM 4.3.2.2 GO:0000166 ... A0A384E0N4 30573755
    107 5nxa:E (2.4) BS01 FUM 4.3.2.2 GO:0000166 ... A0A384E0N4 30573755
    108 5nxa:G (2.4) BS01 FUM 4.3.2.2 GO:0000166 ... A0A384E0N4 30573755
    109 5nxa:H (2.4) BS01 FUM 4.3.2.2 GO:0000166 ... A0A384E0N4 30573755
    110 5xmj:A (3.6) BS02 FUM 1.3.5.1 GO:0000104 ... T2GB49 30297797
    111 5xmj:E (3.6) BS02 FUM 1.3.5.1 GO:0000104 ... T2GB49 30297797
    112 5xmj:I (3.6) BS02 FUM 1.3.5.1 GO:0000104 ... T2GB49 30297797
    113 5xmj:M (3.6) BS02 FUM 1.3.5.1 GO:0000104 ... T2GB49 30297797
    114 5xnz:A (2.3) BS01 FUM 4.3.99.5 GO:0003824 ... A0A0K2JL82 29505698
    115 5xnz:A (2.3) BS02 FUM 4.3.99.5 GO:0003824 ... A0A0K2JL82 29505698
    116 6g3f:A (2.222) BS01 FUM 4.3.2.1 GO:0003824 ... Q11KV9 29741885
    117 6g3i:A (2.41) BS02 FUM 4.3.2.1 GO:0003824 ... Q11KV9 29741885
    118 6hj3:A (2.7) BS01 FUM ? GO:0004888 ... Q7NDN8 32627739
    119 6hj3:A (2.7) BS02 FUM ? GO:0004888 ... Q7NDN8 32627739
    120 6hj3:B (2.7) BS01 FUM ? GO:0004888 ... Q7NDN8 32627739
    121 6hj3:B (2.7) BS02 FUM ? GO:0004888 ... Q7NDN8 32627739
    122 6hj3:C (2.7) BS01 FUM ? GO:0004888 ... Q7NDN8 32627739
    123 6hj3:C (2.7) BS02 FUM ? GO:0004888 ... Q7NDN8 32627739
    124 6hj3:D (2.7) BS01 FUM ? GO:0004888 ... Q7NDN8 32627739
    125 6hj3:D (2.7) BS02 FUM ? GO:0004888 ... Q7NDN8 32627739
    126 6hj3:E (2.7) BS01 FUM ? GO:0004888 ... Q7NDN8 32627739
    127 6hj3:E (2.7) BS02 FUM ? GO:0004888 ... Q7NDN8 32627739
    128 6ien:A (2.7) BS02 FUM 4.3.2.1 GO:0003824 ... P9WPY7 30615268
    129 6ien:C (2.7) BS02 FUM 4.3.2.1 GO:0003824 ... P9WPY7 30615268
    130 6ien:D (2.7) BS01 FUM 4.3.2.1 GO:0003824 ... P9WPY7 30615268
    131 6okz:B (3.292) BS01 FUM ? GO:0005886 ... Q9KNE0 N/A
    132 6okz:C (3.292) BS01 FUM ? GO:0005886 ... Q9KNE0 N/A
    133 6rx8:A (1.92) BS01 FUM 4.3.2.1 GO:0003824 ... Q11KV9 31625664
    134 6rx8:A (1.92) BS02 FUM 4.3.2.1 GO:0003824 ... Q11KV9 31625664
    135 6uqn:B (3.298) BS02 FUM 4.2.1.2 GO:0004333 ... E9AE57 31743022
    136 6wng:A (1.55) BS01 FUM 4.3.1.1 GO:0003824 ... A0A077EBQ3 N/A
    137 6wng:A (1.55) BS02 FUM 4.3.1.1 GO:0003824 ... A0A077EBQ3 N/A
    138 6wng:A (1.55) BS03 FUM 4.3.1.1 GO:0003824 ... A0A077EBQ3 N/A
    139 6wng:B (1.55) BS01 FUM 4.3.1.1 GO:0003824 ... A0A077EBQ3 N/A
    140 6wng:B (1.55) BS02 FUM 4.3.1.1 GO:0003824 ... A0A077EBQ3 N/A
    141 6wng:B (1.55) BS03 FUM 4.3.1.1 GO:0003824 ... A0A077EBQ3 N/A
    142 6wng:C (1.55) BS01 FUM 4.3.1.1 GO:0003824 ... A0A077EBQ3 N/A
    143 6wng:C (1.55) BS02 FUM 4.3.1.1 GO:0003824 ... A0A077EBQ3 N/A
    144 6wng:C (1.55) BS03 FUM 4.3.1.1 GO:0003824 ... A0A077EBQ3 N/A
    145 6wng:D (1.55) BS01 FUM 4.3.1.1 GO:0003824 ... A0A077EBQ3 N/A
    146 6wng:D (1.55) BS02 FUM 4.3.1.1 GO:0003824 ... A0A077EBQ3 N/A
    147 6wng:D (1.55) BS03 FUM 4.3.1.1 GO:0003824 ... A0A077EBQ3 N/A
    148 7bsj:A (2.48) BS04 FUM 1.1.1.38 GO:0004470 ... P23368 33554057
    149 7bsj:B (2.48) BS04 FUM 1.1.1.38 GO:0004470 ... P23368 33554057
    150 7c18:A (2.12) BS01 FUM 4.2.1.2 GO:0003824 ... Q65UJ3 N/A
    151 7c18:A (2.12) BS02 FUM 4.2.1.2 GO:0003824 ... Q65UJ3 N/A
    152 7c18:A (2.12) BS03 FUM 4.2.1.2 GO:0003824 ... Q65UJ3 N/A
    153 7c18:B (2.12) BS01 FUM 4.2.1.2 GO:0003824 ... Q65UJ3 N/A
    154 7c18:B (2.12) BS02 FUM 4.2.1.2 GO:0003824 ... Q65UJ3 N/A
    155 7c18:B (2.12) BS03 FUM 4.2.1.2 GO:0003824 ... Q65UJ3 N/A
    156 7c18:C (2.12) BS01 FUM 4.2.1.2 GO:0003824 ... Q65UJ3 N/A
    157 7c18:C (2.12) BS02 FUM 4.2.1.2 GO:0003824 ... Q65UJ3 N/A
    158 7c18:C (2.12) BS03 FUM 4.2.1.2 GO:0003824 ... Q65UJ3 N/A
    159 7c18:D (2.12) BS01 FUM 4.2.1.2 GO:0003824 ... Q65UJ3 N/A
    160 7c18:D (2.12) BS02 FUM 4.2.1.2 GO:0003824 ... Q65UJ3 N/A
    161 7c18:D (2.12) BS03 FUM 4.2.1.2 GO:0003824 ... Q65UJ3 N/A
    162 7c5e:A (1.75) BS01 FUM ? N/A Q9Z2X8 32672401 MOAD: Kd=8.4nM
    163 7c5e:A (1.75) BS02 FUM ? N/A Q9Z2X8 32672401 MOAD: Kd=8.4nM
    164 8ajx:A (1.25) BS02 FUM 1.-.-.- GO:0003955 ... P17117 36443029
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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