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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1002 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 8aa1:A (2.9) BS03 FRU ? N/A Q8A6W3 37286596
    802 8aa1:A (2.9) BS04 FRU ? N/A Q8A6W3 37286596
    803 8aa1:A (2.9) BS05 FRU ? N/A Q8A6W3 37286596
    804 8aa1:B (2.9) BS01 FRU ? GO:0016020 ... Q8A6W4 37286596
    805 8aa1:B (2.9) BS02 FRU ? GO:0016020 ... Q8A6W4 37286596
    806 8aa1:B (2.9) BS03 FRU ? GO:0016020 ... Q8A6W4 37286596
    807 8aa1:B (2.9) BS04 FRU ? GO:0016020 ... Q8A6W4 37286596
    808 8aa1:I (2.9) BS01 FRU ? N/A Q8A6W3 37286596
    809 8aa1:I (2.9) BS02 FRU ? N/A Q8A6W3 37286596
    810 8aa1:I (2.9) BS03 FRU ? N/A Q8A6W3 37286596
    811 8aa1:I (2.9) BS04 FRU ? N/A Q8A6W3 37286596
    812 8aa1:I (2.9) BS05 FRU ? N/A Q8A6W3 37286596
    813 8aa1:J (2.9) BS01 FRU ? GO:0016020 ... Q8A6W4 37286596
    814 8aa1:J (2.9) BS02 FRU ? GO:0016020 ... Q8A6W4 37286596
    815 8aa1:J (2.9) BS03 FRU ? GO:0016020 ... Q8A6W4 37286596
    816 8aa1:J (2.9) BS04 FRU ? GO:0016020 ... Q8A6W4 37286596
    817 8aa2:A (3.1) BS01 FRU ? N/A Q8A6W3 37286596
    818 8aa2:A (3.1) BS02 FRU ? N/A Q8A6W3 37286596
    819 8aa2:A (3.1) BS03 FRU ? N/A Q8A6W3 37286596
    820 8aa2:B (3.1) BS01 FRU ? GO:0016020 ... Q8A6W4 37286596
    821 8aa2:B (3.1) BS02 FRU ? GO:0016020 ... Q8A6W4 37286596
    822 8aa2:B (3.1) BS03 FRU ? GO:0016020 ... Q8A6W4 37286596
    823 8aa2:E (3.1) BS01 FRU 3.2.1.26 GO:0004553 ... Q8A6W6 37286596
    824 8aa2:E (3.1) BS02 FRU 3.2.1.26 GO:0004553 ... Q8A6W6 37286596
    825 8aa2:E (3.1) BS03 FRU 3.2.1.26 GO:0004553 ... Q8A6W6 37286596
    826 8aa2:E (3.1) BS04 FRU 3.2.1.26 GO:0004553 ... Q8A6W6 37286596
    827 8aa2:E (3.1) BS05 FRU 3.2.1.26 GO:0004553 ... Q8A6W6 37286596
    828 8aa2:E (3.1) BS06 FRU 3.2.1.26 GO:0004553 ... Q8A6W6 37286596
    829 8aa2:E (3.1) BS07 FRU 3.2.1.26 GO:0004553 ... Q8A6W6 37286596
    830 8aa2:E (3.1) BS08 FRU 3.2.1.26 GO:0004553 ... Q8A6W6 37286596
    831 8aa2:G (3.1) BS01 FRU ? N/A Q8A6W5 37286596
    832 8aa2:G (3.1) BS02 FRU ? N/A Q8A6W5 37286596
    833 8aa2:I (3.1) BS01 FRU ? N/A Q8A6W3 37286596
    834 8aa2:I (3.1) BS02 FRU ? N/A Q8A6W3 37286596
    835 8aa2:I (3.1) BS03 FRU ? N/A Q8A6W3 37286596
    836 8aa2:I (3.1) BS04 FRU ? N/A Q8A6W3 37286596
    837 8aa2:J (3.1) BS01 FRU ? GO:0016020 ... Q8A6W4 37286596
    838 8aa2:J (3.1) BS02 FRU ? GO:0016020 ... Q8A6W4 37286596
    839 8aa2:J (3.1) BS03 FRU ? GO:0016020 ... Q8A6W4 37286596
    840 8aa2:M (3.1) BS01 FRU 3.2.1.26 GO:0004553 ... Q8A6W6 37286596
    841 8aa2:M (3.1) BS02 FRU 3.2.1.26 GO:0004553 ... Q8A6W6 37286596
    842 8aa2:M (3.1) BS03 FRU 3.2.1.26 GO:0004553 ... Q8A6W6 37286596
    843 8aa2:M (3.1) BS04 FRU 3.2.1.26 GO:0004553 ... Q8A6W6 37286596
    844 8aa2:M (3.1) BS05 FRU 3.2.1.26 GO:0004553 ... Q8A6W6 37286596
    845 8aa3:A (2.7) BS01 FRU ? N/A Q8A6W3 37286596
    846 8aa3:A (2.7) BS02 FRU ? N/A Q8A6W3 37286596
    847 8aa3:A (2.7) BS03 FRU ? N/A Q8A6W3 37286596
    848 8aa3:A (2.7) BS04 FRU ? N/A Q8A6W3 37286596
    849 8aa3:B (2.7) BS01 FRU ? GO:0016020 ... Q8A6W4 37286596
    850 8aa3:B (2.7) BS02 FRU ? GO:0016020 ... Q8A6W4 37286596
    851 8aa3:B (2.7) BS03 FRU ? GO:0016020 ... Q8A6W4 37286596
    852 8aa3:I (2.7) BS01 FRU ? N/A Q8A6W3 37286596
    853 8aa3:I (2.7) BS02 FRU ? N/A Q8A6W3 37286596
    854 8aa3:I (2.7) BS03 FRU ? N/A Q8A6W3 37286596
    855 8aa3:J (2.7) BS01 FRU ? GO:0016020 ... Q8A6W4 37286596
    856 8aa3:J (2.7) BS02 FRU ? GO:0016020 ... Q8A6W4 37286596
    857 8aa3:J (2.7) BS03 FRU ? GO:0016020 ... Q8A6W4 37286596
    858 8bes:A (1.86) BS03 FRU 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    859 8bes:B (1.86) BS03 FRU 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    860 8bes:C (1.86) BS05 FRU 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    861 8bes:D (1.86) BS03 FRU 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    862 8bet:A (2.38) BS02 FRU 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    863 8bet:B (2.38) BS02 FRU 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    864 8bet:C (2.38) BS02 FRU 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    865 8bet:D (2.38) BS02 FRU 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    866 8beu:A (2.27) BS01 FRU 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    867 8beu:B (2.27) BS01 FRU 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    868 8beu:C (2.27) BS01 FRU 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    869 8beu:D (2.27) BS01 FRU 3.2.1.26 GO:0004553 ... A0A856TAI5 36499311
    870 8cdo:A (1.32) BS02 FRU ? GO:0015833 ... A5WYD2 38058289
    871 8cdo:A (1.32) BS04 FRU ? GO:0015833 ... A5WYD2 38058289
    872 8ch1:A (1.496) BS03 FRU ? GO:0015833 ... B9JXG4 38058289
    873 8ch3:A (1.398) BS02 FRU ? GO:0015833 ... B9JXG4 38058289
    874 8cke:A (1.298) BS02 FRU ? GO:0015833 ... Q52012 38058289
    875 8cke:A (1.298) BS04 FRU ? GO:0015833 ... Q52012 38058289
    876 8dc9:A (2.47) BS01 FRU 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    877 8dc9:B (2.47) BS01 FRU 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    878 8dca:A (2.43) BS02 FRU 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    879 8dca:B (2.43) BS01 FRU 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    880 8dcb:A (2.6) BS02 FRU 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    881 8dcb:B (2.6) BS02 FRU 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    882 8dcd:A (2.22) BS02 FRU 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    883 8dcd:B (2.22) BS02 FRU 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    884 8dcf:A (2.42) BS01 FRU 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    885 8dcf:B (2.42) BS01 FRU 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    886 8dcg:A (2.35) BS01 FRU 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    887 8dcg:B (2.35) BS01 FRU 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    888 8dzd:A (1.901) BS02 FRU ? N/A A0QY10 N/A
    889 8dzd:B (1.901) BS02 FRU ? N/A A0QY10 N/A
    890 8fyy:A (2.8) BS02 FRU 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38372302
    891 8fyz:B (3.4) BS02 FRU 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38372302
    892 8fz1:A (2.7) BS02 FRU 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38372302
    893 8fz1:B (2.7) BS02 FRU 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38372302
    894 8hui:A (1.44) BS02 FRU N/A N/A N/A N/A
    895 8hui:A (1.44) BS03 FRU N/A N/A N/A N/A
    896 8hui:B (1.44) BS02 FRU N/A N/A N/A N/A
    897 8hui:B (1.44) BS03 FRU N/A N/A N/A N/A
    898 8hui:B (1.44) BS04 FRU N/A N/A N/A N/A
    899 8hui:B (1.44) BS05 FRU N/A N/A N/A N/A
    900 8hui:B (1.44) BS06 FRU N/A N/A N/A N/A
    901 8hui:B (1.44) BS07 FRU N/A N/A N/A N/A
    902 8hui:C (1.44) BS01 FRU N/A N/A N/A N/A
    903 8hui:C (1.44) BS03 FRU N/A N/A N/A N/A
    904 8hui:C (1.44) BS04 FRU N/A N/A N/A N/A
    905 8hui:C (1.44) BS05 FRU N/A N/A N/A N/A
    906 8hui:C (1.44) BS06 FRU N/A N/A N/A N/A
    907 8hui:C (1.44) BS07 FRU N/A N/A N/A N/A
    908 8hui:C (1.44) BS08 FRU N/A N/A N/A N/A
    909 8i2r:A (1.36) BS01 FRU 2.4.1.10 GO:0009758 ... B2IF78 37280168
    910 8jma:A (2.5) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    911 8jma:B (2.5) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    912 8jma:C (2.5) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    913 8jma:D (2.5) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    914 8jmh:A (2.5) BS02 FRU ? GO:0001582 ... P83293 38305684
    915 8jmh:B (2.5) BS02 FRU ? GO:0001582 ... P83293 38305684
    916 8jmh:C (2.5) BS02 FRU ? GO:0001582 ... P83293 38305684
    917 8jmh:D (2.5) BS02 FRU ? GO:0001582 ... P83293 38305684
    918 8r8s:A (1.11) BS01 FRU N/A N/A Q89EJ6 39002715
    919 8rfl:A (1.16) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    920 8rfo:A (1.19) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    921 8rfp:A (1.23) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    922 8rfq:A (1.32) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    923 8rfr:A (1.4) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    924 8rfs:A (1.54) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    925 8rft:A (1.7) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    926 8rfu:A (2.18) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    927 8rg8:A (1.21) BS04 FRU N/A GO:0016491 ... H0SLX7 39002715
    928 8rg9:A (1.25) BS04 FRU N/A GO:0016491 ... H0SLX7 39002715
    929 8rgb:A (1.39) BS04 FRU N/A GO:0016491 ... H0SLX7 39002715
    930 8rgc:A (1.55) BS02 FRU N/A GO:0016491 ... H0SLX7 39002715
    931 8rgc:A (1.55) BS05 FRU N/A GO:0016491 ... H0SLX7 39002715
    932 8rgd:A (1.71) BS04 FRU N/A GO:0016491 ... H0SLX7 39002715
    933 8ru9:A (1.1) BS01 FRU N/A N/A Q89EJ6 39002715
    934 8rur:A (1.13) BS01 FRU N/A N/A Q89EJ6 39002715
    935 8ryj:A (1.16) BS01 FRU N/A N/A Q89EJ6 39002715
    936 8ryr:A (1.25) BS01 FRU N/A N/A Q89EJ6 39002715
    937 8ryu:A (1.45) BS01 FRU N/A N/A Q89EJ6 39002715
    938 8ryv:A (1.45) BS01 FRU N/A N/A Q89EJ6 39002715
    939 8s0w:A (1.05) BS03 FRU N/A N/A Q89EJ6 39002715
    940 8s2q:A (1.05) BS03 FRU N/A N/A Q89EJ6 39002715
    941 8s5x:A (1.12) BS03 FRU N/A N/A Q89EJ6 39002715
    942 8s5y:A (1.3) BS03 FRU N/A N/A Q89EJ6 39002715
    943 8s63:A (1.17) BS03 FRU N/A N/A Q89EJ6 39002715
    944 8s64:A (1.42) BS01 FRU N/A N/A Q89EJ6 39002715
    945 8s68:A (1.66) BS03 FRU N/A N/A Q89EJ6 39002715
    946 8s69:A (1.78) BS01 FRU N/A N/A Q89EJ6 39002715
    947 8urk:A (2.11) BS05 FRU N/A N/A A0A8I1DKW0 39244607
    948 8urk:B (2.11) BS04 FRU N/A N/A A0A8I1DKW0 39244607
    949 8urk:B (2.11) BS05 FRU N/A N/A A0A8I1DKW0 39244607
    950 8uvu:A (3.0) BS02 FRU ? GO:0001582 ... B3GTD7 38447670
    951 8uvu:B (3.0) BS02 FRU ? GO:0001582 ... B3GTD7 38447670
    952 8uvu:C (3.0) BS02 FRU ? GO:0001582 ... B3GTD7 38447670
    953 8uvu:D (3.0) BS02 FRU ? GO:0001582 ... B3GTD7 38447670
    954 8vz7:A (2.53) BS04 FRU 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    955 8x83:A (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    956 8x83:B (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    957 8x83:C (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    958 8x83:D (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    959 8x84:A (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    960 8x84:B (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    961 8x84:C (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    962 8x84:D (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    963 9c3s:A (2.16) BS04 FRU N/A N/A A0A8I1DKW0 39244607
    964 9c3s:B (2.16) BS05 FRU N/A N/A A0A8I1DKW0 39244607
    965 9c3u:A (2.77) BS04 FRU N/A N/A A0A8I1DKW0 39244607
    966 9c3u:B (2.77) BS05 FRU N/A N/A A0A8I1DKW0 39244607
    967 9evm:A (1.8) BS01 FRU N/A N/A Q89EJ6 39002715
    968 9j4i:A (1.96) BS01 FRU N/A N/A F8QV43 39098696
    969 9j4i:A (1.96) BS02 FRU N/A N/A F8QV43 39098696
    970 9j4i:A (1.96) BS03 FRU N/A N/A F8QV43 39098696
    971 9j4i:A (1.96) BS04 FRU N/A N/A F8QV43 39098696
    972 9j4i:A (1.96) BS05 FRU N/A N/A F8QV43 39098696
    973 9j4i:B (1.96) BS01 FRU N/A N/A F8QV43 39098696
    974 9j4i:B (1.96) BS02 FRU N/A N/A F8QV43 39098696
    975 9j4i:B (1.96) BS03 FRU N/A N/A F8QV43 39098696
    976 9j4i:B (1.96) BS05 FRU N/A N/A F8QV43 39098696
    977 9j4i:B (1.96) BS06 FRU N/A N/A F8QV43 39098696
    978 9j4i:B (1.96) BS07 FRU N/A N/A F8QV43 39098696
    979 9j4i:C (1.96) BS01 FRU N/A N/A F8QV43 39098696
    980 9j4i:C (1.96) BS02 FRU N/A N/A F8QV43 39098696
    981 9j4i:C (1.96) BS03 FRU N/A N/A F8QV43 39098696
    982 9j4i:C (1.96) BS05 FRU N/A N/A F8QV43 39098696
    983 9j4j:A (2.803) BS01 FRU N/A N/A F8QV43 39098696
    984 9j4j:A (2.803) BS02 FRU N/A N/A F8QV43 39098696
    985 9j4j:A (2.803) BS03 FRU N/A N/A F8QV43 39098696
    986 9j4j:A (2.803) BS04 FRU N/A N/A F8QV43 39098696
    987 9j4j:A (2.803) BS05 FRU N/A N/A F8QV43 39098696
    988 9j4j:B (2.803) BS02 FRU N/A N/A F8QV43 39098696
    989 9j4j:B (2.803) BS03 FRU N/A N/A F8QV43 39098696
    990 9j4j:B (2.803) BS04 FRU N/A N/A F8QV43 39098696
    991 9j4j:B (2.803) BS05 FRU N/A N/A F8QV43 39098696
    992 9j4j:B (2.803) BS06 FRU N/A N/A F8QV43 39098696
    993 9j4j:C (2.803) BS01 FRU N/A N/A F8QV43 39098696
    994 9j4j:C (2.803) BS02 FRU N/A N/A F8QV43 39098696
    995 9j4k:A (2.201) BS01 FRU N/A N/A F8QV43 39098696
    996 9j4k:A (2.201) BS03 FRU N/A N/A F8QV43 39098696
    997 9j4k:A (2.201) BS04 FRU N/A N/A F8QV43 39098696
    998 9j4k:A (2.201) BS05 FRU N/A N/A F8QV43 39098696
    999 9j4k:B (2.201) BS01 FRU N/A N/A F8QV43 39098696
    1000 9j4k:B (2.201) BS03 FRU N/A N/A F8QV43 39098696
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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