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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1002 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a0t:P (2.4) BS02 FRU ? GO:0015288 ... P22340 9437428
    2 1a0t:Q (2.4) BS02 FRU ? GO:0015288 ... P22340 9437428
    3 1a0t:R (2.4) BS02 FRU ? GO:0015288 ... P22340 9437428
    4 1af6:A (2.4) BS02 FRU ? GO:0001618 ... P02943 9299337
    5 1af6:B (2.4) BS02 FRU ? GO:0001618 ... P02943 9299337
    6 1af6:C (2.4) BS02 FRU ? GO:0001618 ... P02943 9299337
    7 1ex2:A (1.85) BS01 FRU 3.6.1.9 GO:0005737 ... Q02169 10841541
    8 1fee:A (1.8) BS01 FRU ? GO:0005507 ... O00244 10966647
    9 1fit:A (1.85) BS01 FRU 2.7.7.51
    3.6.1.29
    3.6.2.1
    3.9.1.-    		 GO:0000166 ... P49789 9261067
    10 1gnx:A (1.68) BS02 FRU 3.2.1.21 GO:0004553 ... Q59976 N/A
    11 1iw1:A (1.5) BS01 FRU 1.14.14.18 GO:0004392 ... P71119 14645223
    12 1jcq:B (2.3) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 11687658
    13 1jgi:A (2.0) BS02 FRU 2.4.1.4 GO:0005576 ... Q9ZEU2 11467966
    14 1jj0:A (1.9) BS02 FRU 3.2.1.17 GO:0003796 ... P00698 11679726
    15 1l0g:A (1.5) BS02 FRU 3.5.2.6 GO:0008800 ... P00811 12144785
    16 1l3s:A (1.7) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 12649320
    17 1l3t:A (1.7) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 12649320
    18 1l3u:A (1.8) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 12649320
    19 1l3v:A (1.71) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 12649320
    20 1l5u:A (1.95) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 12649320
    21 1ld7:B (2.0) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 12036349
    22 1ld8:B (1.8) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 12036349
    23 1mjt:A (2.4) BS02 FRU 1.14.14.47 GO:0004517 ... P0A004 12467576
    24 1mjt:B (2.4) BS01 FRU 1.14.14.47 GO:0004517 ... P0A004 12467576
    25 1mw1:A (2.1) BS02 FRU 2.4.1.4 GO:0005576 ... Q9ZEU2 12364331
    26 1mw2:A (2.1) BS05 FRU 2.4.1.4 GO:0005576 ... Q9ZEU2 12364331
    27 1mw3:A (2.0) BS02 FRU 2.4.1.4 GO:0005576 ... Q9ZEU2 12364331
    28 1mzc:B (2.0) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 12825937
    29 1n3p:A (2.1) BS02 FRU ? GO:0030246 ... Q8GSD2 12595543
    30 1n3p:B (2.1) BS02 FRU ? GO:0030246 ... Q8GSD2 12595543
    31 1n3q:A (2.2) BS01 FRU ? GO:0030246 ... Q8GSD2 12595543
    32 1njw:A (1.9) BS04 FRU 2.7.7.7 GO:0003676 ... Q5KWC1 15035983
    33 1njw:A (1.9) BS06 FRU 2.7.7.7 GO:0003676 ... Q5KWC1 15035983
    34 1njx:A (1.65) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 15035983
    35 1njx:A (1.65) BS07 FRU 2.7.7.7 GO:0003676 ... P52026 15035983
    36 1njy:A (2.0) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 15035983
    37 1njy:A (2.0) BS06 FRU 2.7.7.7 GO:0003676 ... P52026 15035983
    38 1njz:A (2.0) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 15035983
    39 1nk0:A (1.7) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 15035983
    40 1nk4:A (1.6) BS03 FRU 2.7.7.7 GO:0003676 ... P52026 15035983
    41 1nk5:A (2.1) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 15035983
    42 1nk6:A (2.1) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 15035983
    43 1nk7:A (1.9) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 15035983
    44 1nk8:A (1.9) BS03 FRU 2.7.7.7 GO:0003676 ... P52026 15035983
    45 1nk9:A (1.9) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 15035983
    46 1nkb:A (2.0) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 15035983
    47 1nkb:A (2.0) BS06 FRU 2.7.7.7 GO:0003676 ... P52026 15035983
    48 1nkc:A (1.8) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 15035983
    49 1nke:A (1.8) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 15035983
    50 1ob2:A (3.35) BS03 FRU 3.6.1.48 GO:0003723 ... P0CE48 N/A
    51 1ofs:B (1.8) BS02 FRU ? GO:0030246 ... P02867 N/A
    52 1ofs:D (1.8) BS02 FRU ? GO:0030246 ... P02867 N/A
    53 1oh2:P (2.4) BS02 FRU ? GO:0015288 ... P22340 N/A
    54 1oh2:Q (2.4) BS02 FRU ? GO:0015288 ... P22340 N/A
    55 1oh2:R (2.4) BS02 FRU ? GO:0015288 ... P22340 N/A
    56 1pt2:A (2.1) BS02 FRU 2.4.1.10 GO:0005576 ... P05655 14517548
    57 1qz6:A (1.6) BS02 FRU 3.6.4.- GO:0000287 ... P68135 14578936
    58 1r1a:1 (3.2) BS03 FRU 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0005198 ... P23008 2555523
    59 1rzg:A (2.0) BS03 FRU N/A N/A N/A 14981267
    60 1rzg:B (2.0) BS01 FRU N/A N/A N/A 14981267
    61 1rzg:B (2.0) BS02 FRU N/A N/A N/A 14981267
    62 1rzg:C (2.0) BS02 FRU N/A N/A N/A 14981267
    63 1rzg:D (2.0) BS01 FRU N/A N/A N/A 14981267
    64 1s63:B (1.9) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 15248757
    65 1sa4:B (2.1) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 15170324
    66 1tn6:B (1.8) BS03 FRU 2.5.1.58 GO:0003824 ... P49356 15451670
    67 1u45:A (2.01) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 15322558
    68 1u47:A (2.0) BS03 FRU 2.7.7.7 GO:0003676 ... P52026 15322558
    69 1u48:A (2.1) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 15322558
    70 1u49:A (2.15) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 15322558
    71 1u4b:A (1.6) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 15322558
    72 1ua0:A (2.1) BS04 FRU 2.7.7.7 GO:0003676 ... Q5KWC1 15385534
    73 1uc2:A (2.15) BS02 FRU 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 16485279
    74 1uc2:B (2.15) BS01 FRU 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 16485279
    75 1v8x:A (1.85) BS01 FRU 1.14.14.18 GO:0004392 ... P71119 14966119
    76 1w2t:A (1.87) BS01 FRU 3.2.1.26 GO:0004553 ... O33833 16411890
    77 1w2t:B (1.87) BS02 FRU 3.2.1.26 GO:0004553 ... O33833 16411890
    78 1w2t:C (1.87) BS02 FRU 3.2.1.26 GO:0004553 ... O33833 16411890
    79 1w2t:D (1.87) BS02 FRU 3.2.1.26 GO:0004553 ... O33833 16411890
    80 1w2t:E (1.87) BS02 FRU 3.2.1.26 GO:0004553 ... O33833 16411890
    81 1w2t:F (1.87) BS02 FRU 3.2.1.26 GO:0004553 ... O33833 16411890
    82 1x3w:A (3.0) BS01 FRU 3.5.1.52 GO:0000224 ... Q02890 15964983
    83 1x3z:A (2.8) BS04 FRU 3.5.1.52 GO:0000224 ... Q02890 15964983
    84 1xc9:A (1.9) BS04 FRU 2.7.7.7 GO:0003676 ... P52026 15548515
    85 1xlt:A (3.1) BS01 FRU 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    86 1xlt:A (3.1) BS02 FRU 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    87 1xlt:B (3.1) BS01 FRU 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    88 1xlt:B (3.1) BS02 FRU 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    89 1xlt:D (3.1) BS01 FRU 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    90 1xlt:D (3.1) BS02 FRU 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    91 1xlt:E (3.1) BS01 FRU 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    92 1xlt:E (3.1) BS02 FRU 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    93 1xlt:H (3.1) BS01 FRU 7.1.1.1 GO:0000166 ... Q2RSB2 15670609
    94 1y9g:A (1.87) BS01 FRU 3.2.1.80 GO:0000272 ... Q96TU3 15522299
    95 1ylj:A (0.98) BS02 FRU 3.5.2.6 GO:0008800 ... Q9L5C8 15811373
    96 1ylp:A (1.2) BS02 FRU 3.5.2.6 GO:0008800 ... Q840M4 15811373
    97 1ylt:A (1.1) BS02 FRU 3.5.2.6 GO:0008800 ... Q9L5C7 15811373
    98 1ynp:B (1.25) BS01 FRU ? GO:0000166 ... Q9KE47 16242712
    99 1ynq:B (1.3) BS01 FRU ? GO:0000166 ... Q9KE47 16242712
    100 1zs2:A (2.16) BS06 FRU 2.4.1.4 GO:0005576 ... Q9ZEU2 N/A
    101 2add:A (2.5) BS02 FRU 3.2.1.80 GO:0004553 ... Q93X60 17335500
    102 2ade:A (2.65) BS01 FRU 3.2.1.80 GO:0004553 ... Q93X60 17335500
    103 2aez:A (3.05) BS01 FRU 3.2.1.80 GO:0004553 ... Q93X60 17335500
    104 2aez:A (3.05) BS02 FRU 3.2.1.80 GO:0004553 ... Q93X60 17335500
    105 2be2:B (2.43) BS02 FRU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003964 ... P03366 16302798
    106 2c56:A (2.1) BS02 FRU 3.2.2.27 GO:0004844 ... P10186 16306042
    107 2dd4:B (2.06) BS01 FRU 3.5.5.8 GO:0016787 ... O66186 17222425
    108 2dd4:B (2.06) BS02 FRU 3.5.5.8 GO:0016787 ... O66186 17222425
    109 2dd4:E (2.06) BS01 FRU 3.5.5.8 GO:0016787 ... O66186 17222425
    110 2dd4:E (2.06) BS02 FRU 3.5.5.8 GO:0016787 ... O66186 17222425
    111 2dd4:H (2.06) BS01 FRU 3.5.5.8 GO:0016787 ... O66186 17222425
    112 2dd4:H (2.06) BS02 FRU 3.5.5.8 GO:0016787 ... O66186 17222425
    113 2dd4:H (2.06) BS03 FRU 3.5.5.8 GO:0016787 ... O66186 17222425
    114 2dd4:K (2.06) BS01 FRU 3.5.5.8 GO:0016787 ... O66186 17222425
    115 2dd4:K (2.06) BS02 FRU 3.5.5.8 GO:0016787 ... O66186 17222425
    116 2dd4:K (2.06) BS03 FRU 3.5.5.8 GO:0016787 ... O66186 17222425
    117 2dwj:A (2.3) BS01 FRU 3.4.21.- GO:0005576 ... P24627 N/A
    118 2faf:A (1.7) BS02 FRU 4.1.1.32 GO:0004611 ... P21642 16819824
    119 2fah:D (2.09) BS02 FRU 4.1.1.32 GO:0004611 ... P21642 16819824
    120 2fit:A (1.9) BS01 FRU 2.7.7.51
    3.6.1.29
    3.6.2.1
    3.9.1.-    		 GO:0000166 ... P49789 9261067
    121 2gdu:A (2.1) BS02 FRU 2.4.1.7 GO:0004645 ... A0ZZH6 16990265
    122 2gdu:B (2.1) BS02 FRU 2.4.1.7 GO:0004645 ... A0ZZH6 16990265
    123 2gup:A (2.01) BS01 FRU ? N/A A0A0H2USG4 N/A
    124 2gup:A (2.01) BS02 FRU ? N/A A0A0H2USG4 N/A
    125 2h6f:B (1.5) BS03 FRU 2.5.1.58 GO:0003824 ... P49356 16893176
    126 2h6g:B (1.85) BS03 FRU 2.5.1.58 GO:0003824 ... P49356 16893176
    127 2h6h:B (1.8) BS03 FRU 2.5.1.58 GO:0003824 ... P49356 16893176
    128 2h6i:B (3.0) BS03 FRU 2.5.1.58 GO:0003824 ... P49356 16893176
    129 2hds:A (1.16) BS01 FRU 3.5.2.6 GO:0008800 ... P00811 17072304
    130 2hhq:A (1.8) BS04 FRU 2.7.7.7 GO:0003676 ... Q45458 17179038
    131 2hhs:A (1.8) BS04 FRU 2.7.7.7 GO:0003676 ... Q45458 17179038
    132 2hht:A (2.05) BS04 FRU 2.7.7.7 GO:0003676 ... Q45458 17179038
    133 2hhu:A (1.8) BS04 FRU 2.7.7.7 GO:0003676 ... Q5KWC1 17179038
    134 2hhv:A (1.55) BS04 FRU 2.7.7.7 GO:0003676 ... Q5KWC1 17179038
    135 2hhw:A (1.88) BS04 FRU 2.7.7.7 GO:0003676 ... Q5KWC1 17179038
    136 2hhw:D (1.88) BS04 FRU 2.7.7.7 GO:0003676 ... Q5KWC1 17179038
    137 2hhx:A (2.26) BS04 FRU 2.7.7.7 GO:0003676 ... Q5KWC1 17179038
    138 2hrq:A (2.7) BS02 FRU 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 17407327
    139 2hrq:C (2.7) BS02 FRU 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 17407327
    140 2hrq:F (2.7) BS02 FRU 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 17407327
    141 2hrr:A (2.7) BS02 FRU 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 17407327
    142 2hrr:C (2.7) BS02 FRU 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 17407327
    143 2hvh:A (2.492) BS03 FRU 2.7.7.7 GO:0003676 ... Q45458 17179038
    144 2hvh:A (2.492) BS05 FRU 2.7.7.7 GO:0003676 ... Q45458 17179038
    145 2hvh:D (2.492) BS04 FRU 2.7.7.7 GO:0003676 ... Q45458 17179038
    146 2hvi:A (1.98) BS04 FRU 2.7.7.7 GO:0003676 ... Q5KWC1 17179038
    147 2hvi:D (1.98) BS04 FRU 2.7.7.7 GO:0003676 ... Q5KWC1 17179038
    148 2hw1:A (2.1) BS01 FRU 2.7.1.3 GO:0004454 ... P50053 19237742
    149 2hw3:A (1.98) BS04 FRU 2.7.7.7 GO:0003676 ... Q45458 17179038
    150 2hw3:A (1.98) BS06 FRU 2.7.7.7 GO:0003676 ... Q45458 17179038
    151 2i58:A (2.8) BS03 FRU ? GO:0055085 ... A0A0H2URJ7 N/A
    152 2i58:B (2.8) BS03 FRU ? GO:0055085 ... A0A0H2URJ7 N/A
    153 2i5j:B (3.15) BS02 FRU 2.7.7.49 GO:0003964 ... Q8UM83 17184135
    154 2iej:B (1.8) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 17208314
    155 2inv:A (1.8) BS01 FRU 4.2.2.18 GO:0016740 ... Q3SAG3 17192265
    156 2inv:B (1.8) BS01 FRU 4.2.2.18 GO:0016740 ... Q3SAG3 17192265
    157 2inv:C (1.8) BS01 FRU 4.2.2.18 GO:0016740 ... Q3SAG3 17192265
    158 2ny1:C (1.99) BS01 FRU ? N/A Q6P5S8 17301785
    159 2ny1:D (1.99) BS02 FRU ? N/A Q6N030 17301785
    160 2ny2:C (2.0) BS01 FRU ? N/A Q6P5S8 17301785
    161 2ny3:C (2.0) BS01 FRU ? N/A Q6P5S8 17301785
    162 2ny3:D (2.0) BS02 FRU ? N/A Q6N030 17301785
    163 2ny4:C (2.0) BS01 FRU ? N/A Q6P5S8 17301785
    164 2ny4:D (2.0) BS02 FRU N/A N/A N/A 17301785
    165 2ny6:D (2.8) BS02 FRU ? N/A Q6N030 17301785
    166 2oxb:A (2.6) BS01 FRU 3.2.1.26 GO:0004553 ... Q43866 17963237
    167 2pwe:A (2.0) BS02 FRU 5.4.99.11 GO:0004556 ... Q2PS28 17597061
    168 2pwe:B (2.0) BS02 FRU 5.4.99.11 GO:0004556 ... Q2PS28 17597061
    169 2qqu:A (2.84) BS03 FRU 3.2.1.26 GO:0004553 ... Q43866 18258263
    170 2qqv:A (3.01) BS02 FRU 3.2.1.26 GO:0004553 ... Q43866 18258263
    171 2qqw:A (2.8) BS02 FRU 3.2.1.26 GO:0004553 ... Q43866 18258263
    172 2qzy:A (1.9) BS02 FRU 4.1.1.32 GO:0004611 ... P21642 16819824
    173 2wsc:H (3.3) BS01 FRU ? GO:0009507 ... P22179 19923216
    174 2wse:F (3.49) BS01 FRU ? GO:0009507 ... P12355 19923216
    175 2wsf:H (3.48) BS01 FRU ? GO:0009507 ... P22179 19923216
    176 2x7x:A (2.64) BS01 FRU 2.7.13.3 N/A Q8A6X1 20603004
    177 2x7x:B (2.64) BS01 FRU 2.7.13.3 N/A Q8A6X1 20603004
    178 2xeu:A (1.5) BS01 FRU 2.3.2.27 GO:0008270 ... P78317 21857666
    179 2xqr:A (2.58) BS02 FRU 3.2.1.26 GO:0004553 ... Q43866 20858733
    180 2xqr:B (2.58) BS01 FRU ? GO:0004857 ... O49908 20858733
    181 2xqr:C (2.58) BS02 FRU 3.2.1.26 GO:0004553 ... Q43866 20858733
    182 2xqr:D (2.58) BS01 FRU ? GO:0004857 ... O49908 20858733
    183 2xqr:E (2.58) BS01 FRU 3.2.1.26 GO:0004553 ... Q43866 20858733
    184 2xqr:F (2.58) BS01 FRU ? GO:0004857 ... O49908 20858733
    185 2xqr:G (2.58) BS02 FRU 3.2.1.26 GO:0004553 ... Q43866 20858733
    186 2xqr:H (2.58) BS01 FRU ? GO:0004857 ... O49908 20858733
    187 2xqr:I (2.58) BS01 FRU 3.2.1.26 GO:0004553 ... Q43866 20858733
    188 2xqr:J (2.58) BS01 FRU ? GO:0004857 ... O49908 20858733
    189 2xqr:K (2.58) BS02 FRU 3.2.1.26 GO:0004553 ... Q43866 20858733
    190 2xqr:L (2.58) BS01 FRU ? GO:0004857 ... O49908 20858733
    191 2xy7:A (3.05) BS03 FRU 2.7.7.7 GO:0000166 ... E1C9K5 21941252
    192 2yfs:A (2.6) BS02 FRU 2.4.1.9 GO:0009758 ... Q74K42 21801732
    193 2yfs:A (2.6) BS03 FRU 2.4.1.9 GO:0009758 ... Q74K42 21801732
    194 2yft:A (1.85) BS02 FRU 2.4.1.9 GO:0009758 ... Q74K42 21801732
    195 2yft:A (1.85) BS03 FRU 2.4.1.9 GO:0009758 ... Q74K42 21801732
    196 2zzd:B (1.78) BS01 FRU 3.5.5.8 GO:0016787 ... O66186 19785438
    197 2zzd:H (1.78) BS01 FRU 3.5.5.8 GO:0016787 ... O66186 19785438
    198 2zzd:L (1.78) BS02 FRU 3.5.5.8 GO:0003824 ... O66188 19785438
    199 3a2l:A (1.78) BS01 FRU 3.8.1.5 GO:0003824 ... P59337 20645368
    200 3a2l:B (1.78) BS01 FRU 3.8.1.5 GO:0003824 ... P59337 20645368
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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