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BioLiP
Download all results in tab-seperated text for 49 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1kl2:A (2.7) BS03 FON 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    2 1kl2:A (2.7) BS05 FON 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    3 1kl2:B (2.7) BS02 FON 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    4 1kl2:B (2.7) BS05 FON 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    5 1qd1:A (1.7) BS01 FON 2.1.2.5
    4.3.1.4    		 GO:0005542 ... P53603 10673422
    6 1qd1:B (1.7) BS01 FON 2.1.2.5
    4.3.1.4    		 GO:0005542 ... P53603 10673422
    7 1vrq:A (2.2) BS02 FON 1.5.3.24 GO:0000166 ... Q50LF0 15946648
    8 1xzq:A (2.9) BS01 FON 3.6.5.- GO:0002098 ... Q9WYA4 15616586
    9 1xzq:A (2.9) BS02 FON 3.6.5.- GO:0002098 ... Q9WYA4 15616586
    10 1xzq:B (2.9) BS01 FON 3.6.5.- N/A Q9WYA4 15616586
    11 1xzq:B (2.9) BS02 FON 3.6.5.- N/A Q9WYA4 15616586
    12 2bln:A (1.2) BS01 FON 1.1.1.305
    2.1.2.13    		 GO:0003824 ... P77398 15809294
    13 2bln:B (1.2) BS01 FON 1.1.1.305
    2.1.2.13    		 GO:0003824 ... P77398 15809294
    14 3gee:A (2.95) BS02 FON 3.6.-.- GO:0002098 ... Q8KAS1 19806182
    15 3geh:A (3.2) BS02 FON 3.6.-.- GO:0002098 ... Q8YN91 19806182
    16 4lxq:A (1.4) BS01 FON N/A GO:0009058 ... N/A 23898784
    17 4lxq:B (1.4) BS01 FON N/A GO:0009058 ... N/A 23898784
    18 4lxt:A (1.4) BS01 FON N/A GO:0009058 ... N/A 23898784
    19 4lxt:B (1.4) BS01 FON N/A GO:0009058 ... N/A 23898784
    20 4lxu:A (1.4) BS01 FON N/A GO:0009058 ... N/A 23898784
    21 4lxu:B (1.4) BS01 FON N/A GO:0009058 ... N/A 23898784
    22 4lxx:A (1.45) BS01 FON N/A GO:0009058 ... N/A 23898784
    23 4lxx:B (1.45) BS01 FON N/A GO:0009058 ... N/A 23898784
    24 4oyt:A (2.4) BS02 FON 2.1.2.1 GO:0004372 ... A5K8L9 25478836 PDBbind: -logKd/Ki=2.81, Ki=1.55mM
    25 4oyt:A (2.4) BS04 FON 2.1.2.1 GO:0004372 ... A5K8L9 25478836 PDBbind: -logKd/Ki=2.81, Ki=1.55mM
    26 4oyt:B (2.4) BS02 FON 2.1.2.1 GO:0004372 ... A5K8L9 25478836 PDBbind: -logKd/Ki=2.81, Ki=1.55mM
    27 4oyt:B (2.4) BS04 FON 2.1.2.1 GO:0004372 ... A5K8L9 25478836 PDBbind: -logKd/Ki=2.81, Ki=1.55mM
    28 4oyt:C (2.4) BS02 FON 2.1.2.1 GO:0004372 ... A5K8L9 25478836
    29 4xcz:A (1.5) BS01 FON 2.1.2.9 GO:0003824 ... F8RC03 25574689
    30 4xd0:A (1.8) BS02 FON 2.1.2.9 GO:0003824 ... F8RC03 25574689
    31 4xd1:A (1.5) BS01 FON 2.1.2.9 GO:0003824 ... F8RC03 25574689
    32 5es7:A (2.805) BS01 FON ? GO:0009058 ... Q70LM7 26762462
    33 5uik:A (2.2) BS02 FON ? GO:0003824 ... U3GK13 28263875
    34 5uik:B (2.2) BS02 FON ? GO:0003824 ... U3GK13 28263875
    35 5uim:B (2.2) BS01 FON ? GO:0003824 ... U3GK13 28263875
    36 5uin:A (2.2) BS02 FON ? GO:0003824 ... U3GK13 28263875
    37 5uin:A (2.2) BS03 FON ? GO:0003824 ... U3GK13 28263875
    38 5uin:B (2.2) BS02 FON ? GO:0003824 ... U3GK13 28263875
    39 5vyq:A (1.6) BS01 FON 2.1.2.- GO:0004479 ... P9WKZ3 28665588
    40 5vyt:A (2.2) BS01 FON 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    41 5vyt:B (2.2) BS01 FON 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    42 5vyt:C (2.2) BS01 FON 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    43 5vyt:D (2.2) BS01 FON 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    44 6mfw:A (2.5) BS02 FON ? GO:0003824 ... Q70LM7 31699907
    45 6nbp:A (1.7) BS02 FON ? GO:0004479 ... A0A4P1LYI6 30666752
    46 7n7b:A (2.0) BS01 FON ? GO:0004479 ... C5ZW02 34379357
    47 7n7b:B (2.0) BS01 FON ? GO:0004479 ... C5ZW02 34379357
    48 7n7c:A (2.0) BS01 FON ? GO:0004479 ... C5ZW02 34379357
    49 7n7c:B (2.0) BS01 FON ? GO:0004479 ... C5ZW02 34379357
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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