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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a5n:C (2.4) BS03 FMT 3.5.1.5 GO:0005515 ... P18314 9558361
    2 1a5o:C (2.5) BS03 FMT 3.5.1.5 GO:0005515 ... P18314 9558361
    3 1nm0:A (2.3) BS04 FMT 1.11.1.6 GO:0004096 ... P42321 14646074
    4 1r4p:A (1.77) BS01 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    5 1r4p:A (1.77) BS02 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    6 1r4p:A (1.77) BS03 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    7 1r4p:A (1.77) BS04 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    8 1r4p:A (1.77) BS05 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    9 1r4p:A (1.77) BS06 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    10 1r4p:C (1.77) BS01 FMT ? GO:0005576 ... P09386 15075327
    11 1r4p:C (1.77) BS03 FMT ? GO:0005576 ... P09386 15075327
    12 1r4p:D (1.77) BS02 FMT ? GO:0005576 ... P09386 15075327
    13 1r4p:E (1.77) BS01 FMT ? GO:0005576 ... P09386 15075327
    14 1r4p:E (1.77) BS02 FMT ? GO:0005576 ... P09386 15075327
    15 1r4p:F (1.77) BS02 FMT ? GO:0005576 ... P09386 15075327
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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