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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 4231 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 3a6r:A (1.2) BS02 FMN ? GO:0005737 ... Q46604 20397678 MOAD: Kd=1.39nM
    1002 3a6r:B (1.2) BS01 FMN ? GO:0005737 ... Q46604 20397678 MOAD: Kd=1.39nM
    1003 3a6r:B (1.2) BS02 FMN ? GO:0005737 ... Q46604 20397678 MOAD: Kd=1.39nM
    1004 3a6r:C (1.2) BS01 FMN ? GO:0005737 ... Q46604 20397678 MOAD: Kd=1.39nM
    1005 3a6r:C (1.2) BS02 FMN ? GO:0005737 ... Q46604 20397678 MOAD: Kd=1.39nM
    1006 3a6r:D (1.2) BS01 FMN ? GO:0005737 ... Q46604 20397678 MOAD: Kd=1.39nM
    1007 3a6r:D (1.2) BS02 FMN ? GO:0005737 ... Q46604 20397678 MOAD: Kd=1.39nM
    1008 3ad7:A (2.2) BS02 FMN 1.5.3.24 GO:0000166 ... Q50LF0 20675294
    1009 3ad7:B (2.2) BS02 FMN 1.5.3.24 GO:0000166 ... Q50LF2 20675294
    1010 3ad8:A (2.2) BS02 FMN 1.5.3.24 GO:0000166 ... Q50LF0 20675294
    1011 3ad8:B (2.2) BS02 FMN 1.5.3.24 GO:0000166 ... Q50LF2 20675294
    1012 3ad9:A (2.3) BS02 FMN 1.5.3.24 GO:0000166 ... Q50LF0 20675294
    1013 3ad9:B (2.3) BS02 FMN 1.5.3.24 GO:0000166 ... Q50LF2 20675294
    1014 3ada:A (2.2) BS02 FMN 1.5.3.24 GO:0000166 ... Q50LF0 20675294
    1015 3ada:B (2.2) BS02 FMN 1.5.3.24 GO:0000166 ... Q50LF2 20675294
    1016 3amf:A (1.6) BS01 FMN ? GO:0005737 ... Q46604 N/A
    1017 3amf:B (1.6) BS01 FMN ? GO:0005737 ... Q46604 N/A
    1018 3aty:A (1.7) BS01 FMN ? GO:0000166 ... Q8I6L9 21840922
    1019 3aty:B (1.7) BS01 FMN ? GO:0000166 ... Q8I6L9 21840922
    1020 3atz:A (2.04) BS01 FMN ? GO:0000166 ... Q8I6L9 21840922
    1021 3atz:B (2.04) BS01 FMN ? GO:0000166 ... Q8I6L9 21840922
    1022 3atz:C (2.04) BS01 FMN ? GO:0000166 ... Q8I6L9 21840922
    1023 3atz:D (2.04) BS01 FMN ? GO:0000166 ... Q8I6L9 21840922
    1024 3awh:A (1.6) BS01 FMN ? GO:0005737 ... Q46604 N/A
    1025 3awh:A (1.6) BS02 FMN ? GO:0005737 ... Q46604 N/A
    1026 3awh:B (1.6) BS01 FMN ? GO:0005737 ... Q46604 N/A
    1027 3awh:B (1.6) BS02 FMN ? GO:0005737 ... Q46604 N/A
    1028 3b0p:A (1.7) BS01 FMN 1.3.1.-
    1.3.1.91    		 GO:0000049 ... Q5SMC7 22123979
    1029 3b0p:B (1.7) BS01 FMN 1.3.1.-
    1.3.1.91    		 GO:0000049 ... Q5SMC7 22123979
    1030 3b0u:X (1.948) BS02 FMN 1.3.1.-
    1.3.1.91    		 GO:0000049 ... Q5SMC7 22123979
    1031 3b0u:Y (1.948) BS02 FMN 1.3.1.-
    1.3.1.91    		 GO:0000049 ... Q5SMC7 22123979
    1032 3b0v:C (3.51) BS02 FMN 1.3.1.-
    1.3.1.91    		 GO:0000049 ... Q5SMC7 22123979
    1033 3b0v:D (3.51) BS02 FMN 1.3.1.-
    1.3.1.91    		 GO:0000049 ... Q5SMC7 22123979
    1034 3b6i:A (1.66) BS01 FMN 1.6.5.2 GO:0000166 ... P0A8G6 17951395
    1035 3b6i:B (1.66) BS01 FMN 1.6.5.2 GO:0000166 ... P0A8G6 17951395
    1036 3b6j:A (2.05) BS01 FMN 1.6.5.2 GO:0000166 ... P0A8G6 17951395
    1037 3b6j:B (2.05) BS01 FMN 1.6.5.2 GO:0000166 ... P0A8G6 17951395
    1038 3b6k:A (1.99) BS01 FMN 1.6.5.2 GO:0000166 ... P0A8G6 17951395
    1039 3b6k:B (1.99) BS01 FMN 1.6.5.2 GO:0000166 ... P0A8G6 17951395
    1040 3b6m:A (1.85) BS01 FMN 1.6.5.2 GO:0000166 ... P0A8G6 17951395
    1041 3b6m:B (1.85) BS01 FMN 1.6.5.2 GO:0000166 ... P0A8G6 17951395
    1042 3b9o:A (1.9) BS01 FMN 1.14.14.28 GO:0000166 ... A4IU28 18164311
    1043 3b9o:B (1.9) BS01 FMN 1.14.14.28 GO:0000166 ... A4IU28 18164311
    1044 3bem:A (1.65) BS01 FMN 1.-.-.- GO:0005737 ... P96692 N/A
    1045 3bem:A (1.65) BS02 FMN 1.-.-.- GO:0005737 ... P96692 N/A
    1046 3bem:B (1.65) BS01 FMN 1.-.-.- GO:0005737 ... P96692 N/A
    1047 3bem:B (1.65) BS02 FMN 1.-.-.- GO:0005737 ... P96692 N/A
    1048 3bm1:A (2.0) BS01 FMN 1.-.-.- GO:0005829 ... P0ACY1 18241886
    1049 3bm1:A (2.0) BS02 FMN 1.-.-.- GO:0005829 ... P0ACY1 18241886
    1050 3bm1:B (2.0) BS01 FMN 1.-.-.- GO:0005829 ... P0ACY1 18241886
    1051 3bm1:B (2.0) BS02 FMN 1.-.-.- GO:0005829 ... P0ACY1 18241886
    1052 3bnk:A (2.05) BS01 FMN ? GO:0000166 ... Q8TTU7 18842001
    1053 3bnk:B (2.05) BS01 FMN ? GO:0000166 ... Q8TTU7 18842001
    1054 3bw2:A (2.1) BS01 FMN 1.7.3.1 GO:0000166 ... Q9FDD4 21147069
    1055 3bw3:A (2.2) BS01 FMN 1.7.3.1 GO:0000166 ... Q9FDD4 21147069
    1056 3bw4:A (2.2) BS01 FMN 1.7.3.1 GO:0000166 ... Q9FDD4 N/A
    1057 3c3n:A (2.2) BS01 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 18302934
    1058 3c3n:B (2.2) BS01 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 18302934
    1059 3c3n:C (2.2) BS01 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 18302934
    1060 3c3n:D (2.2) BS01 FMN 1.3.98.1 GO:0004152 ... Q4D3W2 18302934
    1061 3c61:A (1.8) BS02 FMN 1.3.98.1 GO:0000166 ... D0VWT2 N/A
    1062 3c61:B (1.8) BS01 FMN 1.3.98.1 GO:0000166 ... D0VWT2 N/A
    1063 3c61:C (1.8) BS01 FMN 1.3.98.1 GO:0000166 ... D0VWT2 N/A
    1064 3c61:D (1.8) BS01 FMN 1.3.98.1 GO:0000166 ... D0VWT2 N/A
    1065 3cb0:A (1.6) BS01 FMN 1.14.14.9 GO:0000166 ... Q8YHT7 18263579 MOAD: Kd=648nM
    1066 3cb0:B (1.6) BS01 FMN 1.14.14.9 GO:0000166 ... Q8YHT7 18263579 MOAD: Kd=648nM
    1067 3cne:C (1.99) BS01 FMN ? GO:0000166 ... Q8A8A4 N/A
    1068 3cne:D (1.99) BS03 FMN ? GO:0000166 ... Q8A8A4 N/A
    1069 3dh7:A (2.97) BS01 FMN 5.3.3.2 GO:0000166 ... Q53W52 18693754
    1070 3dh7:B (2.97) BS01 FMN 5.3.3.2 GO:0000166 ... Q53W52 18693754
    1071 3dh7:C (2.97) BS01 FMN 5.3.3.2 GO:0000166 ... Q53W52 18693754
    1072 3dh7:D (2.97) BS01 FMN 5.3.3.2 GO:0000166 ... Q53W52 18693754
    1073 3e10:A (1.4) BS01 FMN ? GO:0000166 ... Q97IT9 N/A
    1074 3e10:A (1.4) BS02 FMN ? GO:0000166 ... Q97IT9 N/A
    1075 3e10:B (1.4) BS01 FMN ? GO:0000166 ... Q97IT9 N/A
    1076 3e10:B (1.4) BS02 FMN ? GO:0000166 ... Q97IT9 N/A
    1077 3e39:A (1.7) BS01 FMN ? GO:0000166 ... Q314Q8 N/A
    1078 3e39:A (1.7) BS02 FMN ? GO:0000166 ... Q314Q8 N/A
    1079 3e39:B (1.7) BS01 FMN ? GO:0000166 ... Q314Q8 N/A
    1080 3e39:B (1.7) BS02 FMN ? GO:0000166 ... Q314Q8 N/A
    1081 3e4v:A (1.4) BS01 FMN ? GO:0000166 ... Q1H3S7 N/A
    1082 3e4v:A (1.4) BS02 FMN ? GO:0000166 ... Q1H3S7 N/A
    1083 3e4v:B (1.4) BS01 FMN ? GO:0000166 ... Q1H3S7 N/A
    1084 3e4v:B (1.4) BS02 FMN ? GO:0000166 ... Q1H3S7 N/A
    1085 3edo:A (1.2) BS01 FMN ? GO:0000166 ... Q5FKC3 N/A
    1086 3edo:B (1.2) BS01 FMN ? GO:0000166 ... Q5FKC3 N/A
    1087 3ek3:A (1.7) BS01 FMN ? GO:0000166 ... Q5LDN3 N/A
    1088 3eo7:A (1.8) BS01 FMN ? GO:0000166 ... Q3MB62 N/A
    1089 3eo8:A (1.74) BS01 FMN ? GO:0000166 ... Q182R2 N/A
    1090 3eo8:A (1.74) BS02 FMN ? GO:0000166 ... Q182R2 N/A
    1091 3eo8:B (1.74) BS01 FMN ? GO:0000166 ... Q182R2 N/A
    1092 3eo8:B (1.74) BS02 FMN ? GO:0000166 ... Q182R2 N/A
    1093 3eo8:C (1.74) BS01 FMN ? GO:0000166 ... Q182R2 N/A
    1094 3eo8:C (1.74) BS02 FMN ? GO:0000166 ... Q182R2 N/A
    1095 3eo8:D (1.74) BS01 FMN ? GO:0000166 ... Q182R2 N/A
    1096 3eo8:D (1.74) BS02 FMN ? GO:0000166 ... Q182R2 N/A
    1097 3eo8:E (1.74) BS01 FMN ? GO:0000166 ... Q182R2 N/A
    1098 3eo8:E (1.74) BS02 FMN ? GO:0000166 ... Q182R2 N/A
    1099 3eo8:F (1.74) BS01 FMN ? GO:0000166 ... Q182R2 N/A
    1100 3eo8:F (1.74) BS02 FMN ? GO:0000166 ... Q182R2 N/A
    1101 3eof:A (1.99) BS01 FMN ? GO:0000166 ... Q5L9C9 N/A
    1102 3eof:A (1.99) BS02 FMN ? GO:0000166 ... Q5L9C9 N/A
    1103 3eof:B (1.99) BS01 FMN ? GO:0000166 ... Q5L9C9 N/A
    1104 3eof:B (1.99) BS02 FMN ? GO:0000166 ... Q5L9C9 N/A
    1105 3es9:A (3.4) BS01 FMN 1.6.2.4 GO:0003420 ... P00388 19171935
    1106 3esx:A (2.31) BS01 FMN ? GO:0005515 ... P0A3E0 19150326
    1107 3esx:B (2.31) BS01 FMN ? GO:0005515 ... P0A3E0 19150326
    1108 3esy:A (2.39) BS01 FMN ? GO:0005515 ... P0A3E0 19150326
    1109 3esy:B (2.39) BS01 FMN ? GO:0005515 ... P0A3E0 19150326
    1110 3esy:C (2.39) BS01 FMN ? GO:0005515 ... P0A3E0 19150326
    1111 3esy:D (2.39) BS01 FMN ? GO:0005515 ... P0A3E0 19150326
    1112 3esz:A (1.94) BS01 FMN ? GO:0005515 ... P0A3E0 19150326
    1113 3esz:B (1.94) BS01 FMN ? GO:0005515 ... P0A3E0 19150326
    1114 3eyw:A (2.4) BS01 FMN ?
    1.6.5.2    		 GO:0003955 ... P03819
    P0A754    		 19523906
    1115 3eyw:B (2.4) BS01 FMN ?
    1.6.5.2    		 GO:0003955 ... P03819
    P0A754    		 19523906
    1116 3f03:K (1.34) BS02 FMN 1.7.99.- GO:0000166 ... P71278 N/A
    1117 3f1q:A (2.0) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 19351152
    1118 3f2v:A (2.0) BS01 FMN ? GO:0000166 ... Q73QT9 N/A
    1119 3f6r:A (2.0) BS01 FMN ? GO:0009055 ... P26492 19465766
    1120 3f6r:B (2.0) BS01 FMN ? GO:0009055 ... P26492 19465766
    1121 3f6r:C (2.0) BS01 FMN ? GO:0009055 ... P26492 19465766
    1122 3f6r:D (2.0) BS01 FMN ? GO:0009055 ... P26492 19465766
    1123 3f6s:A (2.502) BS01 FMN ? GO:0009055 ... P26492 19465766
    1124 3f6s:B (2.502) BS01 FMN ? GO:0009055 ... P26492 19465766
    1125 3f6s:D (2.502) BS01 FMN ? GO:0009055 ... P26492 19465766
    1126 3f6s:E (2.502) BS01 FMN ? GO:0009055 ... P26492 19465766
    1127 3f6s:F (2.502) BS01 FMN ? GO:0009055 ... P26492 19465766
    1128 3f6s:G (2.502) BS01 FMN ? GO:0009055 ... P26492 19465766
    1129 3f6s:G (2.502) BS02 FMN ? GO:0009055 ... P26492 19465766
    1130 3f6s:H (2.502) BS01 FMN ? GO:0009055 ... P26492 19465766
    1131 3f6s:I (2.502) BS01 FMN ? GO:0009055 ... P26492 19465766
    1132 3f90:A (2.5) BS01 FMN ? GO:0009055 ... P26492 N/A
    1133 3f90:A (2.5) BS02 FMN ? GO:0009055 ... P26492 N/A
    1134 3f90:B (2.5) BS01 FMN ? GO:0009055 ... P26492 N/A
    1135 3f90:D (2.5) BS01 FMN ? GO:0009055 ... P26492 N/A
    1136 3f90:E (2.5) BS01 FMN ? GO:0009055 ... P26492 N/A
    1137 3f90:F (2.5) BS01 FMN ? GO:0009055 ... P26492 N/A
    1138 3f90:G (2.5) BS01 FMN ? GO:0009055 ... P26492 N/A
    1139 3f90:H (2.5) BS01 FMN ? GO:0009055 ... P26492 N/A
    1140 3f90:I (2.5) BS01 FMN ? GO:0009055 ... P26492 N/A
    1141 3fgc:A (2.3) BS01 FMN 1.14.14.3 GO:0004497 ... P07740 19435287
    1142 3fj6:A (1.8) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 19351152
    1143 3fjl:A (1.9) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 19351152
    1144 3fjo:A (2.5) BS01 FMN 1.6.2.4 GO:0003958 ... P16435
    P16603    		 19483672
    1145 3fx2:A (1.9) BS01 FMN ? GO:0009055 ... P00323 2002503
    1146 3g0u:A (2.0) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 19351152
    1147 3g0x:A (1.8) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 19351152
    1148 3g5a:A (1.95) BS02 FMN 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    1149 3g5a:B (1.95) BS02 FMN 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    1150 3g5a:C (1.95) BS02 FMN 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    1151 3g5a:D (1.95) BS02 FMN 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    1152 3g5a:E (1.95) BS02 FMN 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    1153 3g5a:F (1.95) BS02 FMN 2.7.7.2 GO:0000287 ... Q6FNA9 19375431
    1154 3gag:A (1.7) BS01 FMN ? GO:0000166 ... Q8DVW4 N/A
    1155 3gag:A (1.7) BS02 FMN ? GO:0000166 ... Q8DVW4 N/A
    1156 3gag:B (1.7) BS01 FMN ? GO:0000166 ... Q8DVW4 N/A
    1157 3gag:B (1.7) BS02 FMN ? GO:0000166 ... Q8DVW4 N/A
    1158 3gag:C (1.7) BS01 FMN ? GO:0000166 ... Q8DVW4 N/A
    1159 3gag:C (1.7) BS02 FMN ? GO:0000166 ... Q8DVW4 N/A
    1160 3gag:D (1.7) BS01 FMN ? GO:0000166 ... Q8DVW4 N/A
    1161 3gag:D (1.7) BS02 FMN ? GO:0000166 ... Q8DVW4 N/A
    1162 3gb5:A (2.0) BS01 FMN 1.21.1.1 GO:0016491 ... Q9DCX8 19436071
    1163 3gbh:A (2.0) BS01 FMN ? GO:0000166 ... A0A0H2VHN8 N/A
    1164 3gbh:A (2.0) BS02 FMN ? GO:0000166 ... A0A0H2VHN8 N/A
    1165 3gbh:B (2.0) BS01 FMN ? GO:0000166 ... A0A0H2VHN8 N/A
    1166 3gbh:B (2.0) BS02 FMN ? GO:0000166 ... A0A0H2VHN8 N/A
    1167 3gbh:C (2.0) BS01 FMN ? GO:0000166 ... A0A0H2VHN8 N/A
    1168 3gbh:C (2.0) BS02 FMN ? GO:0000166 ... A0A0H2VHN8 N/A
    1169 3gbh:D (2.0) BS01 FMN ? GO:0000166 ... A0A0H2VHN8 N/A
    1170 3gbh:D (2.0) BS02 FMN ? GO:0000166 ... A0A0H2VHN8 N/A
    1171 3ge5:A (1.7) BS01 FMN ? GO:0000166 ... Q7MX99 N/A
    1172 3ge5:A (1.7) BS02 FMN ? GO:0000166 ... Q7MX99 N/A
    1173 3ge5:B (1.7) BS01 FMN ? GO:0000166 ... Q7MX99 N/A
    1174 3ge5:B (1.7) BS02 FMN ? GO:0000166 ... Q7MX99 N/A
    1175 3ge6:A (1.85) BS01 FMN ? GO:0000166 ... B1YG32 N/A
    1176 3ge6:A (1.85) BS02 FMN ? GO:0000166 ... B1YG32 N/A
    1177 3ge6:B (1.85) BS01 FMN ? GO:0000166 ... B1YG32 N/A
    1178 3ge6:B (1.85) BS02 FMN ? GO:0000166 ... B1YG32 N/A
    1179 3gfa:A (1.35) BS01 FMN ? GO:0000166 ... Q17ZU8 N/A
    1180 3gfa:A (1.35) BS02 FMN ? GO:0000166 ... Q17ZU8 N/A
    1181 3gfa:B (1.35) BS01 FMN ? GO:0000166 ... Q17ZU8 N/A
    1182 3gfa:B (1.35) BS02 FMN ? GO:0000166 ... Q17ZU8 N/A
    1183 3gfd:A (2.45) BS01 FMN 1.21.1.1 GO:0016491 ... Q9DCX8 19436071
    1184 3gfd:A (2.45) BS03 FMN 1.21.1.1 GO:0016491 ... Q9DCX8 19436071
    1185 3gfd:B (2.45) BS01 FMN 1.21.1.1 GO:0016491 ... Q9DCX8 19436071
    1186 3gfd:B (2.45) BS03 FMN 1.21.1.1 GO:0016491 ... Q9DCX8 19436071
    1187 3gfq:A (2.996) BS01 FMN 1.7.-.- GO:0005829 ... O07529 19682074
    1188 3gfq:B (2.996) BS01 FMN 1.7.-.- GO:0005829 ... O07529 19682074
    1189 3gfq:C (2.996) BS01 FMN 1.7.-.- GO:0005829 ... O07529 19682074
    1190 3gfq:D (2.996) BS01 FMN 1.7.-.- GO:0005829 ... O07529 19682074
    1191 3gfr:A (2.403) BS01 FMN 1.7.-.- GO:0005829 ... O07529 19682074
    1192 3gfr:B (2.403) BS01 FMN 1.7.-.- GO:0005829 ... O07529 19682074
    1193 3gfr:C (2.403) BS01 FMN 1.7.-.- GO:0005829 ... O07529 19682074
    1194 3gfr:D (2.403) BS01 FMN 1.7.-.- GO:0005829 ... O07529 19682074
    1195 3gfs:A (2.105) BS01 FMN 1.7.-.- GO:0005829 ... O07529 19682074
    1196 3gfs:B (2.105) BS01 FMN 1.7.-.- GO:0005829 ... O07529 19682074
    1197 3gfs:C (2.105) BS01 FMN 1.7.-.- GO:0005829 ... O07529 19682074
    1198 3gfs:D (2.105) BS01 FMN 1.7.-.- GO:0005829 ... O07529 19682074
    1199 3gfs:E (2.105) BS01 FMN 1.7.-.- GO:0005829 ... O07529 19682074
    1200 3gfs:F (2.105) BS01 FMN 1.7.-.- GO:0005829 ... O07529 19682074
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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