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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 4231 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 2uv8:H (3.1) BS01 FMN 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59    		 GO:0004312 ... P07149 17431182
    802 2uv8:I (3.1) BS01 FMN 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59    		 GO:0004312 ... P07149 17431182
    803 2ux9:A (1.4) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    804 2ux9:A (1.4) BS03 FMN ? GO:0000166 ... Q5SIE3 17855371
    805 2ux9:B (1.4) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    806 2ux9:B (1.4) BS03 FMN ? GO:0000166 ... Q5SIE3 17855371
    807 2ux9:B (1.4) BS04 FMN ? GO:0000166 ... Q5SIE3 17855371
    808 2ux9:C (1.4) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    809 2ux9:C (1.4) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    810 2ux9:D (1.4) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    811 2ux9:D (1.4) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    812 2ux9:E (1.4) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    813 2ux9:E (1.4) BS03 FMN ? GO:0000166 ... Q5SIE3 17855371
    814 2ux9:F (1.4) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    815 2ux9:F (1.4) BS03 FMN ? GO:0000166 ... Q5SIE3 17855371
    816 2v0u:A (1.4) BS01 FMN 2.7.11.1 N/A O49003 18001137
    817 2v0w:A (1.7) BS01 FMN 2.7.11.1 N/A O49003 18001137
    818 2v18:A (2.59) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    819 2v18:A (2.59) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    820 2v18:A (2.59) BS03 FMN ? GO:0000166 ... Q5SIE3 17855371
    821 2v18:B (2.59) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    822 2v18:B (2.59) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    823 2v18:B (2.59) BS05 FMN ? GO:0000166 ... Q5SIE3 17855371
    824 2v18:C (2.59) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    825 2v18:C (2.59) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    826 2v18:C (2.59) BS04 FMN ? GO:0000166 ... Q5SIE3 17855371
    827 2v18:D (2.59) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    828 2v18:D (2.59) BS03 FMN ? GO:0000166 ... Q5SIE3 17855371
    829 2v18:D (2.59) BS04 FMN ? GO:0000166 ... Q5SIE3 17855371
    830 2v18:E (2.59) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    831 2v18:E (2.59) BS03 FMN ? GO:0000166 ... Q5SIE3 17855371
    832 2v18:F (2.59) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    833 2v18:F (2.59) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    834 2v18:F (2.59) BS03 FMN ? GO:0000166 ... Q5SIE3 17855371
    835 2v18:G (2.59) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    836 2v18:G (2.59) BS04 FMN ? GO:0000166 ... Q5SIE3 17855371
    837 2v18:H (2.59) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    838 2v18:H (2.59) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    839 2v18:H (2.59) BS03 FMN ? GO:0000166 ... Q5SIE3 17855371
    840 2v18:I (2.59) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    841 2v18:I (2.59) BS03 FMN ? GO:0000166 ... Q5SIE3 17855371
    842 2v18:I (2.59) BS05 FMN ? GO:0000166 ... Q5SIE3 17855371
    843 2v18:J (2.59) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    844 2v18:J (2.59) BS03 FMN ? GO:0000166 ... Q5SIE3 17855371
    845 2v18:J (2.59) BS05 FMN ? GO:0000166 ... Q5SIE3 17855371
    846 2v18:K (2.59) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    847 2v18:K (2.59) BS03 FMN ? GO:0000166 ... Q5SIE3 17855371
    848 2v18:K (2.59) BS04 FMN ? GO:0000166 ... Q5SIE3 17855371
    849 2v18:L (2.59) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    850 2v18:L (2.59) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    851 2v18:L (2.59) BS03 FMN ? GO:0000166 ... Q5SIE3 17855371
    852 2v19:A (2.59) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    853 2v19:A (2.59) BS03 FMN ? GO:0000166 ... Q5SIE3 17855371
    854 2v19:B (2.59) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    855 2v19:C (2.59) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    856 2v19:D (2.59) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    857 2v19:E (2.59) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    858 2v19:E (2.59) BS04 FMN ? GO:0000166 ... Q5SIE3 17855371
    859 2v19:F (2.59) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    860 2v19:G (2.59) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    861 2v19:G (2.59) BS04 FMN ? GO:0000166 ... Q5SIE3 17855371
    862 2v19:H (2.59) BS03 FMN ? GO:0000166 ... Q5SIE3 17855371
    863 2v19:I (2.59) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    864 2v19:I (2.59) BS03 FMN ? GO:0000166 ... Q5SIE3 17855371
    865 2v19:I (2.59) BS04 FMN ? GO:0000166 ... Q5SIE3 17855371
    866 2v19:J (2.59) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    867 2v19:K (2.59) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    868 2v19:K (2.59) BS03 FMN ? GO:0000166 ... Q5SIE3 17855371
    869 2v19:K (2.59) BS04 FMN ? GO:0000166 ... Q5SIE3 17855371
    870 2v19:L (2.59) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    871 2v19:L (2.59) BS03 FMN ? GO:0000166 ... Q5SIE3 17855371
    872 2v1a:A (1.65) BS01 FMN 2.7.11.1 N/A O49003 18001137
    873 2v1b:A (1.55) BS01 FMN 2.7.11.1 N/A O49003 18001137
    874 2v21:A (2.4) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    875 2v21:A (2.4) BS02 FMN ? GO:0000166 ... Q5SIE3 17855371
    876 2v21:B (2.4) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    877 2v21:C (2.4) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    878 2v21:D (2.4) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    879 2v21:F (2.4) BS01 FMN ? GO:0000166 ... Q5SIE3 17855371
    880 2v5u:A (1.99) BS01 FMN ? GO:0005515 ... P0A3E0 17904516
    881 2v5u:B (1.99) BS01 FMN ? GO:0005515 ... P0A3E0 17904516
    882 2v5v:A (1.88) BS01 FMN ? GO:0005515 ... P0A3E0 17904516 MOAD: Kd=4.8nM
    883 2v5v:B (1.88) BS01 FMN ? GO:0005515 ... P0A3E0 17904516 MOAD: Kd=4.8nM
    884 2v9c:A (2.18) BS01 FMN 1.6.5.-
    1.7.1.17    		 GO:0003960 ... Q9I5F3 17904577
    885 2v9c:B (2.18) BS02 FMN 1.6.5.-
    1.7.1.17    		 GO:0003960 ... Q9I5F3 17904577
    886 2vbv:A (2.4) BS03 FMN 2.7.1.161 GO:0000166 ... Q60365 18073108
    887 2vdc:A (9.5) BS02 FMN 1.4.1.13 GO:0004355 ... Q05755 18199747
    888 2vdc:B (9.5) BS02 FMN 1.4.1.13 GO:0004355 ... Q05755 18199747
    889 2vdc:C (9.5) BS02 FMN 1.4.1.13 GO:0004355 ... Q05755 18199747
    890 2vdc:D (9.5) BS02 FMN 1.4.1.13 GO:0004355 ... Q05755 18199747
    891 2vdc:E (9.5) BS02 FMN 1.4.1.13 GO:0004355 ... Q05755 18199747
    892 2vdc:F (9.5) BS02 FMN 1.4.1.13 GO:0004355 ... Q05755 18199747
    893 2vkz:G (4.0) BS01 FMN 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59    		 GO:0004312 ... P07149 18725634
    894 2vkz:H (4.0) BS01 FMN 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59    		 GO:0004312 ... P07149 18725634
    895 2vkz:I (4.0) BS01 FMN 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59    		 GO:0004312 ... P07149 18725634
    896 2vyx:A (1.5) BS01 FMN ? GO:0000166 ... Q5SIE3 N/A
    897 2vyx:A (1.5) BS04 FMN ? GO:0000166 ... Q5SIE3 N/A
    898 2vyx:B (1.5) BS01 FMN ? GO:0000166 ... Q5SIE3 N/A
    899 2vyx:B (1.5) BS02 FMN ? GO:0000166 ... Q5SIE3 N/A
    900 2vyx:C (1.5) BS01 FMN ? GO:0000166 ... Q5SIE3 N/A
    901 2vyx:C (1.5) BS02 FMN ? GO:0000166 ... Q5SIE3 N/A
    902 2vyx:D (1.5) BS01 FMN ? GO:0000166 ... Q5SIE3 N/A
    903 2vyx:D (1.5) BS03 FMN ? GO:0000166 ... Q5SIE3 N/A
    904 2vyx:E (1.5) BS01 FMN ? GO:0000166 ... Q5SIE3 N/A
    905 2vyx:E (1.5) BS03 FMN ? GO:0000166 ... Q5SIE3 N/A
    906 2vyx:F (1.5) BS01 FMN ? GO:0000166 ... Q5SIE3 N/A
    907 2vyx:F (1.5) BS02 FMN ? GO:0000166 ... Q5SIE3 N/A
    908 2vyx:F (1.5) BS03 FMN ? GO:0000166 ... Q5SIE3 N/A
    909 2vyx:G (1.5) BS01 FMN ? GO:0000166 ... Q5SIE3 N/A
    910 2vyx:G (1.5) BS03 FMN ? GO:0000166 ... Q5SIE3 N/A
    911 2vyx:H (1.5) BS01 FMN ? GO:0000166 ... Q5SIE3 N/A
    912 2vyx:H (1.5) BS03 FMN ? GO:0000166 ... Q5SIE3 N/A
    913 2vyx:I (1.5) BS02 FMN ? GO:0000166 ... Q5SIE3 N/A
    914 2vyx:I (1.5) BS03 FMN ? GO:0000166 ... Q5SIE3 N/A
    915 2vyx:J (1.5) BS01 FMN ? GO:0000166 ... Q5SIE3 N/A
    916 2vyx:J (1.5) BS02 FMN ? GO:0000166 ... Q5SIE3 N/A
    917 2vyx:K (1.5) BS01 FMN ? GO:0000166 ... Q5SIE3 N/A
    918 2vyx:K (1.5) BS02 FMN ? GO:0000166 ... Q5SIE3 N/A
    919 2vyx:L (1.5) BS02 FMN ? GO:0000166 ... Q5SIE3 N/A
    920 2vyx:L (1.5) BS03 FMN ? GO:0000166 ... Q5SIE3 N/A
    921 2w0u:A (2.84) BS02 FMN 1.1.3.15
    1.2.3.5    		 GO:0001561 ... Q9UJM8 20054120
    922 2w0u:B (2.84) BS02 FMN 1.1.3.15
    1.2.3.5    		 GO:0001561 ... Q9UJM8 20054120
    923 2w0u:C (2.84) BS02 FMN 1.1.3.15
    1.2.3.5    		 GO:0001561 ... Q9UJM8 20054120
    924 2w0u:D (2.84) BS02 FMN 1.1.3.15
    1.2.3.5    		 GO:0001561 ... Q9UJM8 20054120
    925 2w5u:A (2.62) BS01 FMN ? GO:0010181 ... O25776 19725577
    926 2w5u:B (2.62) BS01 FMN ? GO:0010181 ... O25776 19725577
    927 2wc1:A (2.17) BS01 FMN ? GO:0009055 ... P52967 23303276
    928 2wkp:A (1.9) BS02 FMN 2.7.11.1
    3.6.5.2    		 GO:0001764 ... O49003
    P63000    		 19693014
    929 2wkq:A (1.6) BS02 FMN 2.7.11.1
    3.6.5.2    		 GO:0001764 ... O49003
    P63000    		 19693014
    930 2wkr:A (2.2) BS02 FMN 2.7.11.1
    3.6.5.2    		 GO:0001764 ... O49003
    P63000    		 19693014
    931 2wqf:A (1.35) BS01 FMN ? GO:0000166 ... Q9CED0 20562311
    932 2wv8:A (1.9) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 20183850
    933 2wzv:A (1.75) BS01 FMN 1.-.-.- GO:0000166 ... A0R6D0 20624223
    934 2wzv:A (1.75) BS02 FMN 1.-.-.- GO:0000166 ... A0R6D0 20624223
    935 2wzv:B (1.75) BS01 FMN 1.-.-.- GO:0000166 ... A0R6D0 20624223
    936 2wzv:B (1.75) BS02 FMN 1.-.-.- GO:0000166 ... A0R6D0 20624223
    937 2wzw:A (1.8) BS01 FMN 1.-.-.- GO:0000166 ... A0R6D0 20624223
    938 2wzw:A (1.8) BS03 FMN 1.-.-.- GO:0000166 ... A0R6D0 20624223
    939 2wzw:B (1.8) BS01 FMN 1.-.-.- GO:0000166 ... A0R6D0 20624223
    940 2wzw:B (1.8) BS02 FMN 1.-.-.- GO:0000166 ... A0R6D0 20624223
    941 2x2o:A (1.13) BS01 FMN ? GO:0000166 ... Q81G57 20187055
    942 2x2p:A (1.15) BS01 FMN ? GO:0000166 ... Q81G57 20187055
    943 2xod:A (0.96) BS01 FMN ? GO:0000166 ... A0A1T3V7R2 20831589
    944 2xoe:A (1.4) BS01 FMN ? GO:0000166 ... A0A1T3V7R2 20831589
    945 2ybb:1 (19.0) BS02 FMN 7.1.1.- GO:0005886 ... Q56222 21909073
    946 2yiz:A (1.7) BS02 FMN ? GO:0000166 ... Q8VK10 21897938
    947 2yiz:A (1.7) BS03 FMN ? GO:0000166 ... Q8VK10 21897938
    948 2yiz:B (1.7) BS02 FMN ? GO:0000166 ... Q8VK10 21897938
    949 2yiz:B (1.7) BS03 FMN ? GO:0000166 ... Q8VK10 21897938
    950 2yiz:C (1.7) BS02 FMN ? GO:0000166 ... Q8VK10 21897938
    951 2yiz:D (1.7) BS01 FMN ? GO:0000166 ... Q8VK10 21897938
    952 2yiz:D (1.7) BS03 FMN ? GO:0000166 ... Q8VK10 21897938
    953 2yj0:A (2.4) BS03 FMN ? GO:0000166 ... Q8VK10 21897938
    954 2yj0:A (2.4) BS04 FMN ? GO:0000166 ... Q8VK10 21897938
    955 2yj0:B (2.4) BS01 FMN ? GO:0000166 ... Q8VK10 21897938
    956 2yj0:B (2.4) BS04 FMN ? GO:0000166 ... Q8VK10 21897938
    957 2yj0:B (2.4) BS05 FMN ? GO:0000166 ... Q8VK10 21897938
    958 2yj0:C (2.4) BS03 FMN ? GO:0000166 ... Q8VK10 21897938
    959 2yj0:D (2.4) BS01 FMN ? GO:0000166 ... Q8VK10 21897938
    960 2yj0:D (2.4) BS04 FMN ? GO:0000166 ... Q8VK10 21897938
    961 2yj0:E (2.4) BS05 FMN ? GO:0000166 ... Q8VK10 21897938
    962 2yj0:E (2.4) BS06 FMN ? GO:0000166 ... Q8VK10 21897938
    963 2yj0:F (2.4) BS05 FMN ? GO:0000166 ... Q8VK10 21897938
    964 2z6c:A (2.1) BS01 FMN 2.7.11.1 N/A O48963 18585389
    965 2z6c:B (2.1) BS01 FMN 2.7.11.1 N/A O48963 18585389
    966 2z6d:A (2.0) BS01 FMN 2.7.11.1 N/A P93025 18585389
    967 2z6d:B (2.0) BS01 FMN 2.7.11.1 N/A P93025 18585389
    968 2z6i:A (1.7) BS03 FMN 1.13.12.16
    1.3.-.-
    1.3.1.9    		 GO:0000166 ... Q9FBC5 18305197
    969 2z6i:B (1.7) BS03 FMN 1.13.12.16
    1.3.-.-
    1.3.1.9    		 GO:0000166 ... Q9FBC5 18305197
    970 2z6j:A (2.3) BS02 FMN 1.13.12.16
    1.3.-.-
    1.3.1.9    		 GO:0000166 ... Q9FBC5 18305197
    971 2z6j:B (2.3) BS02 FMN 1.13.12.16
    1.3.-.-
    1.3.1.9    		 GO:0000166 ... Q9FBC5 18305197
    972 2z98:A (1.4) BS01 FMN 1.6.5.-
    1.7.1.17    		 GO:0005829 ... P41407 18337254
    973 2z9b:A (1.7) BS01 FMN 1.6.5.-
    1.7.1.17    		 GO:0005829 ... P41407 18337254
    974 2z9c:A (2.3) BS01 FMN 1.6.5.-
    1.7.1.17    		 GO:0005829 ... P41407 18337254
    975 2z9d:A (2.1) BS01 FMN 1.6.5.-
    1.7.1.17    		 GO:0005829 ... P41407 18337254
    976 2z9d:B (2.1) BS01 FMN 1.6.5.-
    1.7.1.17    		 GO:0005829 ... P41407 18337254
    977 2zfa:A (1.81) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 18367206
    978 2zfa:B (1.81) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 18367206
    979 2zru:A (2.0) BS01 FMN 5.3.3.2 GO:0000287 ... P61615 19158086 MOAD: Kd=467nM
    980 2zru:B (2.0) BS01 FMN 5.3.3.2 GO:0000287 ... P61615 19158086 MOAD: Kd=467nM
    981 2zru:C (2.0) BS01 FMN 5.3.3.2 GO:0000287 ... P61615 19158086 MOAD: Kd=467nM
    982 2zru:D (2.0) BS01 FMN 5.3.3.2 GO:0000287 ... P61615 19158086 MOAD: Kd=467nM
    983 2zrw:A (2.4) BS01 FMN 5.3.3.2 GO:0000287 ... P61615 19158086
    984 2zrw:B (2.4) BS01 FMN 5.3.3.2 GO:0000287 ... P61615 19158086
    985 2zrw:C (2.4) BS01 FMN 5.3.3.2 GO:0000287 ... P61615 19158086
    986 2zrw:D (2.4) BS01 FMN 5.3.3.2 GO:0000287 ... P61615 19158086
    987 2zrx:A (3.0) BS01 FMN 5.3.3.2 GO:0000287 ... P61615 19158086
    988 2zrx:B (3.0) BS01 FMN 5.3.3.2 GO:0000287 ... P61615 19158086
    989 2zrx:C (3.0) BS01 FMN 5.3.3.2 GO:0000287 ... P61615 19158086
    990 2zrx:D (3.0) BS01 FMN 5.3.3.2 GO:0000287 ... P61615 19158086
    991 3a20:A (1.6) BS01 FMN ? GO:0005737 ... Q46604 17261542 MOAD: Kd=1.12nM
    992 3a20:A (1.6) BS02 FMN ? GO:0005737 ... Q46604 17261542 MOAD: Kd=1.12nM
    993 3a20:B (1.6) BS01 FMN ? GO:0005737 ... Q46604 17261542 MOAD: Kd=1.12nM
    994 3a20:B (1.6) BS02 FMN ? GO:0005737 ... Q46604 17261542 MOAD: Kd=1.12nM
    995 3a3b:B (2.0) BS01 FMN 2.5.1.9 GO:0000166 ... C4TPG1 19854891
    996 3a6q:A (1.4) BS01 FMN ? GO:0005737 ... Q46604 20397678 MOAD: Kd=0.9nM
    997 3a6q:A (1.4) BS02 FMN ? GO:0005737 ... Q46604 20397678 MOAD: Kd=0.9nM
    998 3a6q:B (1.4) BS01 FMN ? GO:0005737 ... Q46604 20397678 MOAD: Kd=0.9nM
    999 3a6q:B (1.4) BS02 FMN ? GO:0005737 ... Q46604 20397678 MOAD: Kd=0.9nM
    1000 3a6r:A (1.2) BS01 FMN ? GO:0005737 ... Q46604 20397678 MOAD: Kd=1.39nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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