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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 4231 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 2gq9:A (1.7) BS01 FMN ? GO:0000166 ... Q8EEC8 16857682
    602 2gqa:A (1.7) BS01 FMN ? GO:0000166 ... Q8EEC8 16857682
    603 2gsw:A (2.92) BS01 FMN 1.7.-.- GO:0005829 ... O07529 N/A
    604 2gsw:B (2.92) BS01 FMN 1.7.-.- GO:0005829 ... O07529 N/A
    605 2gsw:C (2.92) BS01 FMN 1.7.-.- GO:0005829 ... O07529 N/A
    606 2gsw:D (2.92) BS01 FMN 1.7.-.- GO:0005829 ... O07529 N/A
    607 2h0u:A (1.9) BS01 FMN ? GO:0000166 ... Q7BGI8 N/A
    608 2h8x:A (1.5) BS01 FMN 1.6.99.1 GO:0000166 ... Q88NF7 16822524
    609 2h8z:A (1.42) BS01 FMN 1.6.99.1 GO:0000166 ... Q88NF7 16822524
    610 2h90:A (1.42) BS01 FMN 1.6.99.1 GO:0000166 ... Q88NF7 16822524
    611 2hay:A (2.11) BS01 FMN 1.-.-.- GO:0000166 ... Q9A120 N/A
    612 2hay:A (2.11) BS02 FMN 1.-.-.- GO:0000166 ... Q9A120 N/A
    613 2hay:B (2.11) BS01 FMN 1.-.-.- GO:0000166 ... Q9A120 N/A
    614 2hay:B (2.11) BS02 FMN 1.-.-.- GO:0000166 ... Q9A120 N/A
    615 2hay:C (2.11) BS01 FMN 1.-.-.- GO:0000166 ... Q9A120 N/A
    616 2hay:C (2.11) BS02 FMN 1.-.-.- GO:0000166 ... Q9A120 N/A
    617 2hay:D (2.11) BS01 FMN 1.-.-.- GO:0000166 ... Q9A120 N/A
    618 2hay:D (2.11) BS02 FMN 1.-.-.- GO:0000166 ... Q9A120 N/A
    619 2hfn:A (1.8) BS01 FMN ? GO:0000166 ... P74295 17042486
    620 2hfn:B (1.8) BS01 FMN ? GO:0000166 ... P74295 17042486
    621 2hfn:C (1.8) BS01 FMN ? GO:0000166 ... P74295 17042486
    622 2hfn:D (1.8) BS01 FMN ? GO:0000166 ... P74295 17042486
    623 2hfn:E (1.8) BS01 FMN ? GO:0000166 ... P74295 17042486
    624 2hfn:F (1.8) BS01 FMN ? GO:0000166 ... P74295 17042486
    625 2hfn:G (1.8) BS01 FMN ? GO:0000166 ... P74295 17042486
    626 2hfn:H (1.8) BS01 FMN ? GO:0000166 ... P74295 17042486
    627 2hfn:I (1.8) BS01 FMN ? GO:0000166 ... P74295 17042486
    628 2hfn:J (1.8) BS01 FMN ? GO:0000166 ... P74295 17042486
    629 2hfo:A (2.1) BS01 FMN ? GO:0000166 ... P74295 17042486
    630 2hfo:B (2.1) BS01 FMN ? GO:0000166 ... P74295 17042486
    631 2hfo:C (2.1) BS01 FMN ? GO:0000166 ... P74295 17042486
    632 2hfo:D (2.1) BS01 FMN ? GO:0000166 ... P74295 17042486
    633 2hfo:E (2.1) BS01 FMN ? GO:0000166 ... P74295 17042486
    634 2hfo:F (2.1) BS01 FMN ? GO:0000166 ... P74295 17042486
    635 2hfo:G (2.1) BS01 FMN ? GO:0000166 ... P74295 17042486
    636 2hfo:H (2.1) BS01 FMN ? GO:0000166 ... P74295 17042486
    637 2hfo:I (2.1) BS01 FMN ? GO:0000166 ... P74295 17042486
    638 2hfo:J (2.1) BS01 FMN ? GO:0000166 ... P74295 17042486
    639 2hpv:A (2.0) BS01 FMN 1.6.5.-
    1.7.1.17    		 GO:0009055 ... Q831B2 N/A
    640 2hpv:B (2.0) BS01 FMN 1.6.5.-
    1.7.1.17    		 GO:0009055 ... Q831B2 N/A
    641 2hpv:C (2.0) BS01 FMN 1.6.5.-
    1.7.1.17    		 GO:0009055 ... Q831B2 N/A
    642 2hpv:D (2.0) BS01 FMN 1.6.5.-
    1.7.1.17    		 GO:0009055 ... Q831B2 N/A
    643 2hs6:A (1.9) BS01 FMN 1.3.1.42 GO:0005777 ... Q9FEW9 16983071
    644 2hs6:B (1.9) BS01 FMN 1.3.1.42 GO:0005777 ... Q9FEW9 16983071
    645 2hs8:A (1.9) BS01 FMN 1.3.1.42 GO:0005777 ... Q9FEW9 16983071
    646 2hs8:B (1.9) BS01 FMN 1.3.1.42 GO:0005777 ... Q9FEW9 16983071
    647 2hsa:A (1.5) BS01 FMN 1.3.1.42 GO:0005777 ... Q9FEW9 16983071
    648 2hsa:A (1.5) BS02 FMN 1.3.1.42 GO:0005777 ... Q9FEW9 16983071
    649 2hsa:B (1.5) BS01 FMN 1.3.1.42 GO:0005777 ... Q9FEW9 16983071
    650 2hsa:B (1.5) BS02 FMN 1.3.1.42 GO:0005777 ... Q9FEW9 16983071
    651 2i02:A (1.8) BS01 FMN ? GO:0000166 ... B2J0D8 N/A
    652 2i02:B (1.8) BS01 FMN ? GO:0000166 ... B2J0D8 N/A
    653 2i51:A (1.4) BS01 FMN ? GO:0000166 ... B2J933 N/A
    654 2i51:A (1.4) BS02 FMN ? GO:0000166 ... B2J933 N/A
    655 2i51:B (1.4) BS01 FMN ? GO:0000166 ... B2J933 N/A
    656 2i51:B (1.4) BS02 FMN ? GO:0000166 ... B2J933 N/A
    657 2i7h:A (2.3) BS01 FMN ? GO:0000166 ... Q81HL8 N/A
    658 2i7h:A (2.3) BS02 FMN ? GO:0000166 ... Q81HL8 N/A
    659 2i7h:B (2.3) BS01 FMN ? GO:0000166 ... Q81HL8 N/A
    660 2i7h:B (2.3) BS02 FMN ? GO:0000166 ... Q81HL8 N/A
    661 2i7h:C (2.3) BS01 FMN ? GO:0000166 ... Q81HL8 N/A
    662 2i7h:C (2.3) BS02 FMN ? GO:0000166 ... Q81HL8 N/A
    663 2i7h:D (2.3) BS01 FMN ? GO:0000166 ... Q81HL8 N/A
    664 2i7h:D (2.3) BS02 FMN ? GO:0000166 ... Q81HL8 N/A
    665 2ifa:A (2.3) BS01 FMN ? GO:0000166 ... Q8DW21 N/A
    666 2ifa:A (2.3) BS02 FMN ? GO:0000166 ... Q8DW21 N/A
    667 2ifa:B (2.3) BS01 FMN ? GO:0000166 ... Q8DW21 N/A
    668 2ifa:B (2.3) BS02 FMN ? GO:0000166 ... Q8DW21 N/A
    669 2ifa:C (2.3) BS01 FMN ? GO:0000166 ... Q8DW21 N/A
    670 2ifa:C (2.3) BS02 FMN ? GO:0000166 ... Q8DW21 N/A
    671 2ifa:C (2.3) BS03 FMN ? GO:0000166 ... Q8DW21 N/A
    672 2ifa:D (2.3) BS01 FMN ? GO:0000166 ... Q8DW21 N/A
    673 2ifa:D (2.3) BS02 FMN ? GO:0000166 ... Q8DW21 N/A
    674 2ifa:E (2.3) BS01 FMN ? GO:0000166 ... Q8DW21 N/A
    675 2ifa:E (2.3) BS02 FMN ? GO:0000166 ... Q8DW21 N/A
    676 2ifa:F (2.3) BS01 FMN ? GO:0000166 ... Q8DW21 N/A
    677 2ifa:F (2.3) BS02 FMN ? GO:0000166 ... Q8DW21 N/A
    678 2ig6:A (1.8) BS01 FMN ? GO:0000166 ... Q97G05 N/A
    679 2ig6:B (1.8) BS01 FMN ? GO:0000166 ... Q97G05 N/A
    680 2iml:A (1.65) BS01 FMN ? GO:0000166 ... O28442 N/A
    681 2iml:D (1.65) BS01 FMN ? GO:0000166 ... O28442 N/A
    682 2isj:A (2.3) BS01 FMN 1.13.11.79 GO:0000166 ... Q92PC8 17377583 MOAD: Ki=231uM
    683 2isj:A (2.3) BS02 FMN 1.13.11.79 GO:0000166 ... Q92PC8 17377583 MOAD: Ki=231uM
    684 2isj:B (2.3) BS01 FMN 1.13.11.79 GO:0000166 ... Q92PC8 17377583 MOAD: Ki=231uM
    685 2isj:B (2.3) BS02 FMN 1.13.11.79 GO:0000166 ... Q92PC8 17377583 MOAD: Ki=231uM
    686 2isj:C (2.3) BS01 FMN 1.13.11.79 GO:0000166 ... Q92PC8 17377583 MOAD: Ki=231uM
    687 2isj:C (2.3) BS02 FMN 1.13.11.79 GO:0000166 ... Q92PC8 17377583 MOAD: Ki=231uM
    688 2isj:D (2.3) BS01 FMN 1.13.11.79 GO:0000166 ... Q92PC8 17377583 MOAD: Ki=231uM
    689 2isj:D (2.3) BS02 FMN 1.13.11.79 GO:0000166 ... Q92PC8 17377583 MOAD: Ki=231uM
    690 2isj:E (2.3) BS01 FMN 1.13.11.79 GO:0000166 ... Q92PC8 17377583 MOAD: Ki=231uM
    691 2isj:E (2.3) BS02 FMN 1.13.11.79 GO:0000166 ... Q92PC8 17377583 MOAD: Ki=231uM
    692 2isj:F (2.3) BS01 FMN 1.13.11.79 GO:0000166 ... Q92PC8 17377583 MOAD: Ki=231uM
    693 2isj:F (2.3) BS02 FMN 1.13.11.79 GO:0000166 ... Q92PC8 17377583 MOAD: Ki=231uM
    694 2isj:G (2.3) BS01 FMN 1.13.11.79 GO:0000166 ... Q92PC8 17377583 MOAD: Ki=231uM
    695 2isj:G (2.3) BS02 FMN 1.13.11.79 GO:0000166 ... Q92PC8 17377583 MOAD: Ki=231uM
    696 2isj:H (2.3) BS01 FMN 1.13.11.79 GO:0000166 ... Q92PC8 17377583 MOAD: Ki=231uM
    697 2isj:H (2.3) BS02 FMN 1.13.11.79 GO:0000166 ... Q92PC8 17377583 MOAD: Ki=231uM
    698 2iyg:A (2.3) BS01 FMN ? GO:0009882 ... Q3J677 16949615
    699 2iyg:B (2.3) BS01 FMN ? GO:0009882 ... Q3J677 16949615
    700 2iyi:A (2.95) BS01 FMN ? GO:0009882 ... Q3J677 16949615
    701 2iyi:B (2.95) BS01 FMN ? GO:0009882 ... Q3J677 16949615
    702 2j09:A (2.0) BS02 FMN 4.1.99.3 GO:0000166 ... P61497 17051659
    703 2j6x:A (2.1) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 17142893
    704 2j6x:B (2.1) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 17142893
    705 2j6x:C (2.1) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 17142893
    706 2j6x:D (2.1) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 17142893
    707 2j6x:E (2.1) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 17142893
    708 2j6x:F (2.1) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 17142893
    709 2j6x:G (2.1) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 17142893
    710 2j6x:H (2.1) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 17142893
    711 2jbs:A (2.8) BS01 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    712 2jbs:A (2.8) BS02 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    713 2jbs:B (2.8) BS01 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    714 2jbs:B (2.8) BS02 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    715 2jbs:C (2.8) BS01 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    716 2jbs:C (2.8) BS02 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    717 2jbs:D (2.8) BS01 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    718 2jbs:D (2.8) BS02 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    719 2jbt:A (2.8) BS01 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    720 2jbt:A (2.8) BS03 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    721 2jbt:B (2.8) BS01 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    722 2jbt:B (2.8) BS03 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    723 2jbt:C (2.8) BS01 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    724 2jbt:C (2.8) BS02 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    725 2jbt:D (2.8) BS01 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    726 2jbt:D (2.8) BS02 FMN 1.14.14.9 GO:0000166 ... Q6Q272 17227849
    727 2kb2:A (-1.00) BS01 FMN ? GO:0009882 ... A6T8V8 19191473
    728 2m6s:A (-1.00) BS01 FMN ? GO:0000166 ... P65367 23749454
    729 2mok:A (-1.00) BS01 FMN ? GO:0000166 ... P61949 N/A
    730 2mt9:A (-1.00) BS01 FMN ? GO:0009055 ... P0ABY4 25380767
    731 2mwg:A (-1.00) BS01 FMN ? GO:0009881 ... O34627 N/A
    732 2mwg:B (-1.00) BS01 FMN ? GO:0009881 ... O34627 N/A
    733 2nli:A (1.59) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 18367206
    734 2nli:B (1.59) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 18367206
    735 2nr4:A (1.85) BS01 FMN ? GO:0000166 ... Q8PVV4 N/A
    736 2nr4:B (1.85) BS01 FMN ? GO:0000166 ... Q8PVV4 N/A
    737 2nzl:A (1.35) BS01 FMN 1.1.3.15
    1.2.3.5    		 GO:0001561 ... Q9UJM8 N/A
    738 2o12:A (1.72) BS01 FMN 4.2.3.5 GO:0004107 ... P9WPY1 N/A
    739 2ohh:A (1.7) BS03 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    740 2ohh:A (1.7) BS04 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    741 2ohh:B (1.7) BS03 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    742 2ohh:D (1.7) BS03 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    743 2ohh:D (1.7) BS04 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    744 2ohh:E (1.7) BS03 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    745 2ohi:A (2.3) BS03 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    746 2ohi:A (2.3) BS04 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    747 2ohi:B (2.3) BS03 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    748 2ohi:D (2.3) BS03 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    749 2ohi:E (2.3) BS03 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    750 2ohi:G (2.3) BS03 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    751 2ohi:G (2.3) BS04 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    752 2ohi:H (2.3) BS01 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    753 2ohi:H (2.3) BS04 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    754 2ohi:I (2.3) BS03 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    755 2ohi:I (2.3) BS04 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    756 2ohi:J (2.3) BS03 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    757 2ohj:A (2.26) BS03 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    758 2ohj:A (2.26) BS04 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    759 2ohj:B (2.26) BS01 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    760 2ohj:B (2.26) BS04 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    761 2ohj:D (2.26) BS03 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    762 2ohj:E (2.26) BS03 FMN 1.5.3.22 GO:0009055 ... Q50497 17480207
    763 2ou5:A (1.6) BS01 FMN ? GO:0000166 ... Q28VU1 N/A
    764 2ou5:A (1.6) BS02 FMN ? GO:0000166 ... Q28VU1 N/A
    765 2ou5:B (1.6) BS01 FMN ? GO:0000166 ... Q28VU1 N/A
    766 2ou5:B (1.6) BS02 FMN ? GO:0000166 ... Q28VU1 N/A
    767 2oys:A (2.0) BS01 FMN ? GO:0000166 ... A0A0H2URW2 17588214
    768 2oys:B (2.0) BS01 FMN ? GO:0000166 ... A0A0H2URW2 17588214
    769 2oz0:A (2.8) BS02 FMN 1.1.2.3 GO:0016491 ... P00175 17563122
    770 2oz0:B (2.8) BS01 FMN 1.1.2.3 GO:0016491 ... P00175 17563122
    771 2pia:A (2.0) BS01 FMN 1.-.-.- GO:0016491 ... P33164 1280857
    772 2pr5:A (1.45) BS01 FMN ? N/A O34627 17764689
    773 2pr5:B (1.45) BS01 FMN ? N/A O34627 17764689
    774 2pr6:A (1.95) BS01 FMN ? N/A O34627 17764689
    775 2pr6:B (1.95) BS01 FMN ? N/A O34627 17764689
    776 2prh:A (2.4) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 18672895
    777 2prl:A (2.1) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 18672895
    778 2prm:A (3.0) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 18672895
    779 2ptf:A (2.35) BS01 FMN ? N/A O26951 N/A
    780 2ptf:B (2.35) BS01 FMN ? N/A O26951 N/A
    781 2q3o:A (2.0) BS01 FMN 1.3.1.42 GO:0005777 ... Q9FUP0 17850744
    782 2q3o:B (2.0) BS01 FMN 1.3.1.42 GO:0005777 ... Q9FUP0 17850744
    783 2q3r:A (2.0) BS01 FMN 1.3.1.42 GO:0005515 ... Q8LAH7 17850744
    784 2q9u:A (1.9) BS01 FMN ? GO:0000166 ... Q86QZ1 18077462
    785 2q9u:B (1.9) BS01 FMN ? GO:0000166 ... Q86QZ1 18077462
    786 2r01:A (1.15) BS02 FMN ? GO:0000166 ... Q8KFI1 N/A
    787 2r14:A (1.4) BS01 FMN ? GO:0000166 ... Q51990 17939663
    788 2r6v:A (1.25) BS01 FMN ? GO:0010181 ... O58586 N/A
    789 2r96:A (2.6) BS01 FMN 1.6.5.2 GO:0000166 ... P0A8G6 19665595
    790 2r96:C (2.6) BS01 FMN 1.6.5.2 GO:0000166 ... P0A8G6 19665595
    791 2r97:A (2.0) BS01 FMN 1.6.5.2 GO:0000166 ... P0A8G6 19665595
    792 2r97:A (2.0) BS02 FMN 1.6.5.2 GO:0000166 ... P0A8G6 19665595
    793 2r97:C (2.0) BS01 FMN 1.6.5.2 GO:0000166 ... P0A8G6 19665595
    794 2r97:C (2.0) BS02 FMN 1.6.5.2 GO:0000166 ... P0A8G6 19665595
    795 2rdt:A (1.95) BS01 FMN 1.1.3.15
    1.2.3.5    		 GO:0001561 ... Q9UJM8 18215067
    796 2rdu:A (1.65) BS01 FMN 1.1.3.15
    1.2.3.5    		 GO:0001561 ... Q9UJM8 18215067
    797 2rdw:A (1.95) BS02 FMN 1.1.3.15
    1.2.3.5    		 GO:0001561 ... Q9UJM8 18215067
    798 2tmd:A (2.4) BS02 FMN 1.5.8.2 GO:0009056 ... P16099 1551870
    799 2tmd:B (2.4) BS02 FMN 1.5.8.2 GO:0009056 ... P16099 1551870
    800 2uv8:G (3.1) BS01 FMN 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59    		 GO:0004312 ... P07149 17431182
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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