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BioLiP
Download all results in tab-seperated text for 4231 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4201 9bkm:A (2.08) BS01 FMN N/A GO:0004151 ... Q02127 38889244
    4202 9bkn:A (1.3) BS01 FMN N/A GO:0004151 ... Q02127 38889244
    4203 9bko:A (1.44) BS01 FMN N/A GO:0004151 ... Q02127 38889244
    4204 9em0:A (2.2) BS01 FMN N/A N/A Q9FEW9 39103552
    4205 9em0:A (2.2) BS02 FMN N/A N/A Q9FEW9 39103552
    4206 9em0:B (2.2) BS01 FMN N/A N/A Q9FEW9 39103552
    4207 9em0:B (2.2) BS02 FMN N/A N/A Q9FEW9 39103552
    4208 9em2:A (1.54) BS01 FMN N/A N/A Q9FEW9 39103552
    4209 9em2:A (1.54) BS02 FMN N/A N/A Q9FEW9 39103552
    4210 9em2:B (1.54) BS01 FMN N/A N/A Q9FEW9 39103552
    4211 9em2:B (1.54) BS02 FMN N/A N/A Q9FEW9 39103552
    4212 9em3:A (2.27) BS01 FMN N/A N/A Q9FEW9 39103552
    4213 9em4:A (2.01) BS01 FMN N/A N/A Q9FEW9 39103552
    4214 9em4:A (2.01) BS02 FMN N/A N/A Q9FEW9 39103552
    4215 9em4:B (2.01) BS01 FMN N/A N/A Q9FEW9 39103552
    4216 9em4:B (2.01) BS02 FMN N/A N/A Q9FEW9 39103552
    4217 9em5:A (1.6) BS01 FMN N/A N/A Q9FEW9 39103552
    4218 9em6:A (1.72) BS01 FMN N/A N/A Q9FEW9 39103552
    4219 9em6:A (1.72) BS02 FMN N/A N/A Q9FEW9 39103552
    4220 9em6:B (1.72) BS01 FMN N/A N/A Q9FEW9 39103552
    4221 9em6:B (1.72) BS02 FMN N/A N/A Q9FEW9 39103552
    4222 9fdj:B (1.7) BS02 FMN N/A GO:0046872 ... O66841 38960077
    4223 9fdj:D (1.7) BS02 FMN N/A GO:0046872 ... O66841 38960077
    4224 9fdk:B (1.8) BS02 FMN N/A GO:0046872 ... O66841 38960077
    4225 9fdk:D (1.8) BS02 FMN N/A GO:0046872 ... O66841 38960077
    4226 9fe7:B (2.28) BS02 FMN N/A GO:0046872 ... O66841 38960077
    4227 9fe7:D (2.28) BS02 FMN N/A GO:0046872 ... O66841 38960077
    4228 9fif:B (1.77) BS02 FMN N/A GO:0046872 ... O66841 38960077
    4229 9fif:D (1.77) BS02 FMN N/A GO:0046872 ... O66841 38960077
    4230 9fii:B (2.5) BS02 FMN N/A GO:0046872 ... O66841 38960077
    4231 9fii:D (2.5) BS02 FMN N/A GO:0046872 ... O66841 38960077
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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