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BioLiP
Download all results in tab-seperated text for 4231 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3201 7cfu:R (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3202 7cfu:R (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3203 7cfu:S (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3204 7cfu:S (2.15) BS03 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3205 7cfu:T (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3206 7cfu:T (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3207 7cfu:U (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3208 7cfu:U (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3209 7cfu:V (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3210 7cfu:V (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3211 7cfu:W (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3212 7cfu:W (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3213 7cfu:X (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3214 7cfu:X (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3215 7cza:A (3.21) BS01 FMN ? GO:0000166 ... A0A1V1W347 33097503
    3216 7cza:B (3.21) BS01 FMN ? GO:0000166 ... A0A1V1W347 33097503
    3217 7d38:A (2.649) BS02 FMN ? GO:0000166 ... G9YLX2 33542233
    3218 7d39:A (2.198) BS01 FMN ? GO:0000166 ... G9YLX2 33542233
    3219 7d3a:A (2.552) BS01 FMN ? GO:0000166 ... G9YLX2 33542233
    3220 7d3b:A (2.25) BS01 FMN ? GO:0000166 ... G9YLX2 33542233
    3221 7ddz:A (2.8) BS02 FMN 3.2.1.17 GO:0003796 ... P00323
    P49146    		 33531491
    3222 7dgq:8 (5.0) BS02 FMN 7.1.1.2 GO:0005739 ... P25708 34913730
    3223 7dgr:8 (4.6) BS02 FMN 7.1.1.2 GO:0005739 ... P25708 34913730
    3224 7dgs:8 (7.8) BS02 FMN 7.1.1.2 GO:0005739 ... P25708 34913730
    3225 7dgz:8 (3.8) BS02 FMN 7.1.1.2 GO:0005739 ... P25708 34913730
    3226 7dh0:8 (4.2) BS02 FMN 7.1.1.2 GO:0005739 ... P25708 34913730
    3227 7dkf:82 (8.3) BS02 FMN 7.1.1.2 GO:0005739 ... P25708 34913730
    3228 7dp0:A (2.10004) BS01 FMN ? GO:0000166 ... A0A2L0VUJ4 34473996
    3229 7dp0:A (2.10004) BS02 FMN ? GO:0000166 ... A0A2L0VUJ4 34473996
    3230 7dp0:B (2.10004) BS01 FMN ? GO:0000166 ... A0A2L0VUJ4 34473996
    3231 7dp0:B (2.10004) BS02 FMN ? GO:0000166 ... A0A2L0VUJ4 34473996
    3232 7dp1:A (2.0035) BS01 FMN ? GO:0000166 ... A0A2L0VUJ4 34473996
    3233 7dp1:A (2.0035) BS02 FMN ? GO:0000166 ... A0A2L0VUJ4 34473996
    3234 7dp1:B (2.0035) BS01 FMN ? GO:0000166 ... A0A2L0VUJ4 34473996
    3235 7dp1:B (2.0035) BS02 FMN ? GO:0000166 ... A0A2L0VUJ4 34473996
    3236 7dp2:A (2.40009) BS01 FMN ? GO:0000166 ... A0A2L0VUJ4 34473996
    3237 7dp2:A (2.40009) BS02 FMN ? GO:0000166 ... A0A2L0VUJ4 34473996
    3238 7dp2:B (2.40009) BS01 FMN ? GO:0000166 ... A0A2L0VUJ4 34473996
    3239 7dp2:B (2.40009) BS02 FMN ? GO:0000166 ... A0A2L0VUJ4 34473996
    3240 7e1q:A (1.7) BS02 FMN ? GO:0000166 ... A0A0B2E3F3 34836944
    3241 7e1r:A (2.795) BS01 FMN ? GO:0000166 ... B5Z7D6 34836944
    3242 7e1r:C (2.795) BS01 FMN ? GO:0000166 ... B5Z7D6 34836944
    3243 7e1s:A (2.31) BS01 FMN ? GO:0000166 ... B5Z7D6 34836944
    3244 7e1s:C (2.31) BS02 FMN ? GO:0000166 ... B5Z7D6 34836944
    3245 7e5z:B (3.6) BS01 FMN 1.2.1.2 GO:0000166 ... C5ATT6 N/A
    3246 7eg5:A (1.96) BS01 FMN ? GO:0000166 ... Q9CDV0 N/A
    3247 7eg5:B (1.96) BS01 FMN ? GO:0000166 ... Q9CDV0 N/A
    3248 7eg5:B (1.96) BS02 FMN ? GO:0000166 ... Q9CDV0 N/A
    3249 7epe:A (2.5) BS01 FMN ? GO:0004930 ... P00323
    Q14416    		 34135509
    3250 7epf:A (2.7) BS01 FMN ? GO:0004930 ... P00323
    Q14416    		 34135509
    3251 7f1y:A (1.33) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 34214876
    3252 7f1y:B (1.33) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 34214876
    3253 7f20:A (1.3) BS01 FMN 1.1.3.- GO:0016491 ... Q44467 34214876
    3254 7f20:B (1.3) BS01 FMN 1.1.3.- GO:0016491 ... Q44467 34214876
    3255 7f21:A (1.38) BS01 FMN 1.1.3.- GO:0016491 ... Q44467 34214876
    3256 7f21:B (1.38) BS01 FMN 1.1.3.- GO:0016491 ... Q44467 34214876
    3257 7f22:A (1.41) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 34214876
    3258 7f22:B (1.41) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 34214876
    3259 7f72:A (1.64) BS02 FMN ? GO:0000166 ... O05773 36750726
    3260 7f74:A (2.0) BS01 FMN ? GO:0000166 ... O05773 36750726
    3261 7f74:B (2.0) BS01 FMN ? GO:0000166 ... O05773 36750726
    3262 7f74:B (2.0) BS02 FMN ? GO:0000166 ... O05773 36750726
    3263 7f74:C (2.0) BS01 FMN ? GO:0000166 ... O05773 36750726
    3264 7f74:D (2.0) BS01 FMN ? GO:0000166 ... O05773 36750726
    3265 7f76:A (1.57) BS01 FMN ? GO:0000166 ... A0A223KLJ1 N/A
    3266 7f76:B (1.57) BS01 FMN ? GO:0000166 ... A0A223KLJ1 N/A
    3267 7fev:A (1.594) BS01 FMN ? GO:0000166 ... W8PB08 35313092
    3268 7jw9:A (2.39) BS02 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3269 7jw9:B (2.39) BS02 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3270 7jw9:C (2.39) BS02 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3271 7jw9:D (2.39) BS02 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3272 7jyb:A (2.76) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3273 7jyb:B (2.76) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3274 7jyb:C (2.76) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3275 7jyb:D (2.76) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3276 7jyb:E (2.76) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3277 7jyb:G (2.76) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3278 7k14:A (2.75) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3279 7k14:B (2.75) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3280 7k14:C (2.75) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3281 7k14:D (2.75) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3282 7k14:E (2.75) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3283 7k14:G (2.75) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3284 7k14:H (2.75) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3285 7k15:A (2.88) BS02 FMN ? GO:0004930 ... P00323
    Q15722    		 34016973
    3286 7k2u:A (1.73) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 33007394
    3287 7k64:A (2.8) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3288 7k64:C (2.8) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3289 7k64:D (2.8) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3290 7k64:E (2.8) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3291 7k64:G (2.8) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3292 7k64:H (2.8) BS01 FMN 1.14.14.5 GO:0000166 ... Q3K9A1 34029591
    3293 7kgz:A (2.4) BS02 FMN ? GO:0000166 ... A0A395V874 35013263
    3294 7kgz:B (2.4) BS02 FMN ? GO:0000166 ... A0A395V874 35013263
    3295 7km2:A (2.19) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3296 7km2:A (2.19) BS02 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3297 7km2:B (2.19) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3298 7km2:B (2.19) BS02 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3299 7km2:C (2.19) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3300 7km2:C (2.19) BS02 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3301 7km2:D (2.19) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3302 7km2:D (2.19) BS02 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3303 7km2:E (2.19) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3304 7km2:E (2.19) BS02 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3305 7km2:F (2.19) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3306 7km2:F (2.19) BS02 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3307 7km2:G (2.19) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3308 7km2:G (2.19) BS02 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3309 7km2:H (2.19) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3310 7km2:H (2.19) BS02 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3311 7km2:I (2.19) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3312 7km2:J (2.19) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3313 7km2:J (2.19) BS02 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3314 7km2:K (2.19) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3315 7km2:K (2.19) BS02 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3316 7km2:L (2.19) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3317 7km2:L (2.19) BS02 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3318 7km3:A (2.26) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3319 7km3:A (2.26) BS03 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3320 7km3:B (2.26) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3321 7km3:B (2.26) BS03 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3322 7km3:C (2.26) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3323 7km3:C (2.26) BS03 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3324 7km3:D (2.26) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3325 7km3:D (2.26) BS02 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3326 7km3:E (2.26) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3327 7km3:E (2.26) BS03 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3328 7km3:F (2.26) BS02 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3329 7km3:F (2.26) BS04 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3330 7km3:G (2.26) BS02 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3331 7km3:G (2.26) BS04 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3332 7km3:H (2.26) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3333 7km3:H (2.26) BS02 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3334 7km3:I (2.26) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3335 7km3:J (2.26) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3336 7km3:K (2.26) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3337 7km3:K (2.26) BS02 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3338 7km3:L (2.26) BS01 FMN 2.5.1.129 GO:0003824 ... O84222 N/A
    3339 7kq5:A (2.0) BS01 FMN 3.4.-.- GO:0006508 ... Q9WZP2 33953921
    3340 7kyk:A (2.15) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 33876936
    3341 7kyk:B (2.15) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 33876936
    3342 7kyk:C (2.15) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 33876936
    3343 7kyk:D (2.15) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 33876936
    3344 7kyv:A (2.4) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 33876936
    3345 7kyy:A (2.0) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 33876936
    3346 7kyy:B (2.0) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 33876936
    3347 7kyy:C (2.0) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 33876936
    3348 7kyy:D (2.0) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 33876936
    3349 7kz4:A (1.75) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 33876936
    3350 7kz4:B (1.75) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 33876936
    3351 7kzy:A (1.75) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 33876936
    3352 7kzy:B (1.75) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 33876936
    3353 7l00:A (1.72) BS01 FMN 1.13.12.16
    1.3.1.9    		 GO:0000166 ... A0A031WIF2 N/A
    3354 7l00:B (1.72) BS01 FMN 1.13.12.16
    1.3.1.9    		 GO:0000166 ... A0A031WIF2 N/A
    3355 7l00:C (1.72) BS01 FMN 1.13.12.16
    1.3.1.9    		 GO:0000166 ... A0A031WIF2 N/A
    3356 7l00:D (1.72) BS01 FMN 1.13.12.16
    1.3.1.9    		 GO:0000166 ... A0A031WIF2 N/A
    3357 7l01:A (1.6) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 33876936
    3358 7l01:B (1.6) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 33876936
    3359 7l0k:A (1.96) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 33876936
    3360 7l0k:B (1.96) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 33876936
    3361 7l18:AAA (2.542) BS01 FMN 1.6.2.4 GO:0003420 ... P00388 33556357
    3362 7l18:BBB (2.542) BS01 FMN 1.6.2.4 GO:0003420 ... P00388 33556357
    3363 7ldq:A (1.15) BS01 FMN N/A GO:0016491 ... N/A N/A
    3364 7ljs:A (2.0) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 33755421
    3365 7ljs:B (2.0) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 33755421
    3366 7ljs:C (2.0) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 33755421
    3367 7ljs:D (2.0) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 33755421
    3368 7ljt:A (1.98) BS06 FMN 1.3.1.2 GO:0000166 ... Q28943 33755421
    3369 7ljt:B (1.98) BS06 FMN 1.3.1.2 GO:0000166 ... Q28943 33755421
    3370 7ljt:C (1.98) BS06 FMN 1.3.1.2 GO:0000166 ... Q28943 33755421
    3371 7ljt:D (1.98) BS06 FMN 1.3.1.2 GO:0000166 ... Q28943 33755421
    3372 7ly4:A (3.8) BS01 FMN N/A GO:0016491 ... N/A 35087027
    3373 7ly4:A (3.8) BS02 FMN N/A GO:0016491 ... N/A 35087027
    3374 7ly4:D (3.8) BS01 FMN N/A GO:0016491 ... N/A 35087027
    3375 7ly5:B (2.5) BS01 FMN N/A GO:0016491 ... N/A 35087027
    3376 7ly6:A (2.73) BS01 FMN N/A GO:0016491 ... N/A 35087027
    3377 7ly7:B (3.8) BS01 FMN N/A GO:0016491 ... N/A 35087027
    3378 7m2o:A (2.07) BS01 FMN 1.1.3.15
    1.2.3.5    		 GO:0001561 ... Q9UJM8 N/A
    3379 7m31:A (1.69) BS07 FMN 1.3.1.2 GO:0000166 ... Q28943 34032117
    3380 7m31:B (1.69) BS08 FMN 1.3.1.2 GO:0000166 ... Q28943 34032117
    3381 7m31:C (1.69) BS08 FMN 1.3.1.2 GO:0000166 ... Q28943 34032117
    3382 7m31:D (1.69) BS08 FMN 1.3.1.2 GO:0000166 ... Q28943 34032117
    3383 7mfm:G (2.42) BS01 FMN N/A GO:0006537 ... N/A 34931064
    3384 7mfm:H (2.42) BS01 FMN N/A GO:0006537 ... N/A 34931064
    3385 7mft:G (3.9) BS01 FMN 1.4.1.13 GO:0004355 ... P39812 34931064
    3386 7mmp:A (2.15) BS01 FMN 1.17.4.1 GO:0004748 ... F2I8X9 N/A
    3387 7mmp:B (2.15) BS01 FMN 1.17.4.1 GO:0004748 ... F2I8X9 N/A
    3388 7mmp:C (2.15) BS01 FMN 1.17.4.1 GO:0004748 ... F2I8X9 N/A
    3389 7mmp:E (2.15) BS01 FMN ? GO:0000166 ... F2I8Y0 N/A
    3390 7mmp:F (2.15) BS01 FMN ? GO:0000166 ... F2I8Y0 N/A
    3391 7mmp:G (2.15) BS01 FMN ? GO:0000166 ... F2I8Y0 N/A
    3392 7mmp:H (2.15) BS01 FMN ? GO:0000166 ... F2I8Y0 N/A
    3393 7mmq:A (2.4) BS01 FMN 1.17.4.1 GO:0004748 ... F2I8X9 N/A
    3394 7mmq:B (2.4) BS01 FMN 1.17.4.1 GO:0004748 ... F2I8X9 N/A
    3395 7mmq:C (2.4) BS01 FMN 1.17.4.1 GO:0004748 ... F2I8X9 N/A
    3396 7mmq:E (2.4) BS01 FMN ? GO:0000166 ... F2I8Y0 N/A
    3397 7mmq:F (2.4) BS01 FMN ? GO:0000166 ... F2I8Y0 N/A
    3398 7mmq:G (2.4) BS01 FMN ? GO:0000166 ... F2I8Y0 N/A
    3399 7mmq:H (2.4) BS01 FMN ? GO:0000166 ... F2I8Y0 N/A
    3400 7mmr:B (2.0) BS02 FMN 1.17.4.1 GO:0004748 ... F2I8X9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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