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BioLiP
Download all results in tab-seperated text for 4231 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3001 6wkv:h (2.99) BS02 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3002 6wkv:h (2.99) BS03 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3003 6wkv:i (2.99) BS01 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3004 6wkv:i (2.99) BS02 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3005 6wkv:j (2.99) BS01 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3006 6wkv:j (2.99) BS02 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3007 6wkv:k (2.99) BS01 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3008 6wkv:k (2.99) BS02 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3009 6wkv:l (2.99) BS01 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3010 6wkv:l (2.99) BS02 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3011 6wkv:m (2.99) BS01 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3012 6wkv:m (2.99) BS02 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3013 6wkv:n (2.99) BS01 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3014 6wkv:n (2.99) BS02 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3015 6wkv:o (2.99) BS01 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3016 6wkv:o (2.99) BS02 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3017 6wkv:p (2.99) BS01 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3018 6wkv:p (2.99) BS02 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3019 6wkv:p (2.99) BS03 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3020 6wkv:q (2.99) BS01 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3021 6wkv:q (2.99) BS02 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3022 6wkv:r (2.99) BS01 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3023 6wkv:r (2.99) BS02 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3024 6wkv:s (2.99) BS01 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3025 6wkv:s (2.99) BS02 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3026 6wkv:t (2.99) BS01 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3027 6wkv:t (2.99) BS02 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3028 6wkv:u (2.99) BS01 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3029 6wkv:u (2.99) BS02 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3030 6wkv:v (2.99) BS01 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3031 6wkv:v (2.99) BS02 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3032 6wkv:w (2.99) BS01 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3033 6wkv:w (2.99) BS02 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3034 6wkv:x (2.99) BS01 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3035 6wkv:x (2.99) BS02 FMN 3.4.-.- GO:0006508 ... Q9WZP2 N/A
    3036 6wle:A (3.0) BS01 FMN ? N/A Q94BT6 33337855
    3037 6wle:B (3.0) BS01 FMN ? N/A Q94BT6 33337855
    3038 6wle:C (3.0) BS01 FMN ? N/A Q94BT6 33337855
    3039 6wle:D (3.0) BS01 FMN ? N/A Q94BT6 33337855
    3040 6wle:E (3.0) BS01 FMN ? N/A Q94BT6 33337855
    3041 6wle:F (3.0) BS01 FMN ? N/A Q94BT6 33337855
    3042 6wle:G (3.0) BS01 FMN ? N/A Q94BT6 33337855
    3043 6wlp:A (3.0) BS01 FMN ? N/A Q94BT6 33337855
    3044 6wlp:B (3.0) BS01 FMN ? N/A Q94BT6 33337855
    3045 6wlp:C (3.0) BS01 FMN ? N/A Q94BT6 33337855
    3046 6wlp:D (3.0) BS01 FMN ? N/A Q94BT6 33337855
    3047 6wlp:E (3.0) BS01 FMN ? N/A Q94BT6 33337855
    3048 6wlp:F (3.0) BS01 FMN ? N/A Q94BT6 33337855
    3049 6wlp:G (3.0) BS01 FMN ? N/A Q94BT6 33337855
    3050 6wt2:A (1.75) BS02 FMN ? GO:0000166 ... A0A0U1RIB4 35195438
    3051 6wt2:A (1.75) BS03 FMN ? GO:0000166 ... A0A0U1RIB4 35195438
    3052 6wt2:B (1.75) BS01 FMN ? GO:0000166 ... A0A0U1RIB4 35195438
    3053 6wt2:B (1.75) BS03 FMN ? GO:0000166 ... A0A0U1RIB4 35195438
    3054 6wt2:C (1.75) BS02 FMN ? GO:0000166 ... A0A0U1RIB4 35195438
    3055 6wt2:C (1.75) BS04 FMN ? GO:0000166 ... A0A0U1RIB4 35195438
    3056 6wt2:D (1.75) BS01 FMN ? GO:0000166 ... A0A0U1RIB4 35195438
    3057 6wt2:D (1.75) BS03 FMN ? GO:0000166 ... A0A0U1RIB4 35195438
    3058 6x89:V1 (3.9) BS02 FMN 7.1.1.2 GO:0005739 ... A0A1S3V7V2 32840211
    3059 6y11:1 (3.109) BS02 FMN 7.1.1.- GO:0005886 ... Q56222 32811817
    3060 6y11:B (3.109) BS02 FMN 7.1.1.- GO:0005886 ... Q56222 32811817
    3061 6y79:B (2.96) BS02 FMN 7.1.1.2 GO:0005739 ... F2Z660 33243981
    3062 6y7r:A (1.6) BS01 FMN 2.7.13.3 N/A B8GAY9 N/A
    3063 6y7r:B (1.6) BS01 FMN 2.7.13.3 N/A B8GAY9 N/A
    3064 6y7u:A (1.6) BS01 FMN 2.7.13.3 N/A B8GAY9 N/A
    3065 6y7u:B (1.6) BS01 FMN 2.7.13.3 N/A B8GAY9 N/A
    3066 6yj4:F (2.7) BS01 FMN 7.1.1.2 GO:0005739 ... F2Z660 32747785
    3067 6ylz:AAA (1.558) BS01 FMN 1.4.3.5 GO:0004733 ... P0AFI7 34019876
    3068 6ymh:AAA (2.417) BS01 FMN 1.4.3.5 GO:0004733 ... P0AFI7 34019876
    3069 6ymh:AAA (2.417) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 34019876
    3070 6ymh:BBB (2.417) BS01 FMN 1.4.3.5 GO:0004733 ... P0AFI7 34019876
    3071 6ymh:BBB (2.417) BS02 FMN 1.4.3.5 GO:0004733 ... P0AFI7 34019876
    3072 6ywg:A (1.45) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    3073 6ywg:B (1.45) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    3074 6ywg:B (1.45) BS02 FMN 2.7.13.3 N/A B8GAY9 33774867
    3075 6ywh:A (1.07) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    3076 6ywh:B (1.07) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    3077 6ywi:A (1.13) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    3078 6ywi:B (1.13) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    3079 6ywi:B (1.13) BS02 FMN 2.7.13.3 N/A B8GAY9 33774867
    3080 6ywq:A (1.27) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    3081 6ywq:B (1.27) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    3082 6ywr:A (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    3083 6ywr:B (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    3084 6yx4:A (1.36) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    3085 6yx4:B (1.36) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    3086 6yx6:A (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    3087 6yx6:B (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    3088 6yxb:A (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    3089 6yxb:B (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    3090 6yxb:C (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    3091 6yxb:D (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    3092 6yxc:A (1.65) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    3093 6yxc:B (1.65) BS01 FMN 2.7.13.3 N/A B8GAY9 33774867
    3094 6ziy:1 (4.25) BS02 FMN 7.1.1.- GO:0005886 ... Q56222 32811817
    3095 6zjl:1 (4.3) BS02 FMN 7.1.1.- GO:0005886 ... Q56222 32811817
    3096 6zk8:A (1.83) BS02 FMN ? GO:0000166 ... A0A452CSW8 32940290
    3097 6zk8:O (1.83) BS03 FMN ? GO:0000166 ... A0A452CSW8 32940290
    3098 6zk9:1 (2.3) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3099 6zkc:1 (3.1) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3100 6zkd:1 (2.7) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3101 6zke:1 (2.6) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3102 6zkf:1 (2.8) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3103 6zkg:1 (3.4) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3104 6zkh:1 (3.0) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3105 6zki:1 (2.8) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3106 6zkj:1 (3.0) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3107 6zkk:1 (3.7) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3108 6zkl:1 (3.1) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3109 6zkm:1 (2.8) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3110 6zkn:1 (2.9) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3111 6zko:1 (3.8) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3112 6zkp:1 (3.2) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3113 6zkq:1 (3.3) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3114 6zkr:1 (3.5) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3115 6zks:1 (3.1) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3116 6zkt:1 (2.8) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3117 6zku:1 (3.0) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3118 6zkv:1 (2.9) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    3119 6zlf:A (1.8) BS02 FMN ? GO:0000166 ... A0A452CSW8 32940290
    3120 6zlf:F (1.8) BS01 FMN ? GO:0000166 ... A0A452CSW8 32940290
    3121 6zlf:G (1.8) BS02 FMN ? GO:0000166 ... A0A452CSW8 32940290
    3122 6zlf:H (1.8) BS02 FMN ? GO:0000166 ... A0A452CSW8 32940290
    3123 6zlf:I (1.8) BS02 FMN ? GO:0000166 ... A0A452CSW8 32940290
    3124 6zlf:J (1.8) BS02 FMN ? GO:0000166 ... A0A452CSW8 32940290
    3125 6zlf:K (1.8) BS02 FMN ? GO:0000166 ... A0A452CSW8 32940290
    3126 6zlf:L (1.8) BS02 FMN ? GO:0000166 ... A0A452CSW8 32940290
    3127 6zr2:F (3.1) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 33067417
    3128 6ztq:F (3.0) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 33067417
    3129 7a23:A (3.7) BS02 FMN 7.1.1.2 GO:0005739 ... Q9FNN5 33060577
    3130 7a24:A (3.8) BS02 FMN 7.1.1.2 GO:0005739 ... Q9FNN5 33060577
    3131 7a6p:A (1.93) BS01 FMN ? GO:0000166 ... Q88JB0 33621443
    3132 7a6p:B (1.93) BS01 FMN ? GO:0000166 ... Q88JB0 33621443
    3133 7ab6:A (1.9) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    3134 7ab6:B (1.9) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    3135 7ab7:A (1.8) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    3136 7ab7:B (1.8) BS01 FMN 2.7.13.3 N/A B8GAY9 33862085
    3137 7abo:A (1.95) BS01 FMN 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    3138 7abo:B (1.95) BS01 FMN 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    3139 7abo:C (1.95) BS01 FMN 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    3140 7abo:D (1.95) BS01 FMN 4.1.1.93 GO:0005737 ... Q9I6N5 33763291
    3141 7aby:A (1.45) BS01 FMN 2.7.11.1 N/A P93025 33862085
    3142 7ak5:F (3.17) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 33514727
    3143 7ak6:F (3.82) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 33514727
    3144 7aqr:F (2.91) BS01 FMN 7.1.1.2 GO:0005739 ... Q9FNN5 33768254
    3145 7ar7:F (3.72) BS01 FMN 7.1.1.2 GO:0008137 ... Q9FNN5 33768254
    3146 7ar8:F (3.53) BS01 FMN 7.1.1.2 GO:0005739 ... Q9FNN5 33768254
    3147 7arb:F (3.41) BS01 FMN 7.1.1.2 GO:0005739 ... Q9FNN5 33768254
    3148 7arc:F (2.88) BS01 FMN 7.1.1.2 GO:0005739 ... A0A7S0V3A3 33768254
    3149 7ard:F (3.11) BS01 FMN N/A GO:0008137 ... N/A 33768254
    3150 7awt:F (2.73) BS02 FMN 7.1.1.- GO:0003954 ... P31979 34562374
    3151 7awv:A (2.2) BS01 FMN 1.6.5.-
    1.7.1.17
    GO:0000166 ... A0A1B1KJ01 35051387
    3152 7awv:B (2.2) BS01 FMN 1.6.5.-
    1.7.1.17
    GO:0000166 ... A0A1B1KJ01 35051387
    3153 7b0n:F (3.7) BS01 FMN 7.1.1.2 GO:0005739 ... Q9UUU2 33640456
    3154 7b93:F (3.04) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 33990335
    3155 7bc4:B (3.1) BS01 FMN 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59
    GO:0004312 ... C4QVT8 33963233
    3156 7blf:A (2.15) BS01 FMN ? GO:0000166 ... A0A384K246 N/A
    3157 7blf:B (2.15) BS01 FMN ? GO:0000166 ... A0A384K246 N/A
    3158 7bn6:A (1.5) BS02 FMN ? GO:0000166 ... M2XAQ9 N/A
    3159 7bn6:B (1.5) BS01 FMN ? GO:0000166 ... M2XAQ9 N/A
    3160 7bn7:A (2.45) BS01 FMN 1.6.99.1 GO:0003959 ... Q03558 N/A
    3161 7bn7:B (2.45) BS01 FMN 1.6.99.1 GO:0003959 ... Q03558 N/A
    3162 7bn7:C (2.45) BS01 FMN 1.6.99.1 GO:0003959 ... Q03558 N/A
    3163 7bn7:D (2.45) BS01 FMN 1.6.99.1 GO:0003959 ... Q03558 N/A
    3164 7bo0:A (1.63) BS02 FMN ? GO:0000166 ... M2XAQ9 N/A
    3165 7bo0:B (1.63) BS01 FMN ? GO:0000166 ... M2XAQ9 N/A
    3166 7bx9:A (1.38) BS01 FMN ? GO:0000166 ... B3VPZ9 33289153
    3167 7cfu:A (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3168 7cfu:A (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3169 7cfu:B (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3170 7cfu:B (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3171 7cfu:C (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3172 7cfu:C (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3173 7cfu:D (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3174 7cfu:D (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3175 7cfu:E (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3176 7cfu:E (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3177 7cfu:F (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3178 7cfu:F (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3179 7cfu:G (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3180 7cfu:G (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3181 7cfu:H (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3182 7cfu:H (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3183 7cfu:I (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3184 7cfu:I (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3185 7cfu:J (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3186 7cfu:J (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3187 7cfu:K (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3188 7cfu:K (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3189 7cfu:L (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3190 7cfu:L (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3191 7cfu:M (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3192 7cfu:M (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3193 7cfu:N (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3194 7cfu:N (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3195 7cfu:O (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3196 7cfu:O (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3197 7cfu:P (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3198 7cfu:P (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3199 7cfu:Q (2.15) BS01 FMN ? GO:0000166 ... A0A1R1S5L5 N/A
    3200 7cfu:Q (2.15) BS02 FMN ? GO:0000166 ... A0A1R1S5L5 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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