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BioLiP
Download all results in tab-seperated text for 4231 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2201 5ko7:A (2.248) BS02 FMN 1.21.1.1 GO:0000166 ... F4KU78 28157283
    2202 5ko7:B (2.248) BS01 FMN 1.21.1.1 GO:0000166 ... F4KU78 28157283
    2203 5ko7:B (2.248) BS02 FMN 1.21.1.1 GO:0000166 ... F4KU78 28157283
    2204 5ko8:A (2.15) BS01 FMN 1.21.1.1 GO:0000166 ... F4KU78 28157283
    2205 5ko8:B (2.15) BS01 FMN 1.21.1.1 GO:0000166 ... F4KU78 28157283
    2206 5krd:A (2.103) BS01 FMN 1.21.1.1 GO:0000166 ... F4KU78 28157283
    2207 5krd:B (2.103) BS01 FMN 1.21.1.1 GO:0000166 ... F4KU78 28157283
    2208 5ksw:A (2.47) BS01 FMN 1.3.1.14 GO:0004152 ... Q9CFW8 N/A
    2209 5ksw:C (2.47) BS01 FMN 1.3.1.14 GO:0004152 ... Q9CFW8 N/A
    2210 5lc5:F (4.35) BS01 FMN 7.1.1.2 GO:0005739 ... P25708 27509854
    2211 5ldw:F (4.27) BS01 FMN 7.1.1.2 GO:0005739 ... P25708 27509854
    2212 5ldx:F (5.6) BS01 FMN 7.1.1.2 GO:0005739 ... P25708 27509854
    2213 5lgx:A (1.5) BS01 FMN ? GO:0000166 ... P71278 28177310
    2214 5lji:A (2.07) BS01 FMN ? GO:0000166 ... Q8DPG4 27649488 MOAD: Kd=83nM
    2215 5lji:C (2.07) BS01 FMN ? GO:0000166 ... Q8DPG4 27649488 MOAD: Kd=83nM
    2216 5ljp:A (1.1) BS01 FMN ? GO:0005515 ... P0A3E0 28702545 MOAD: Ka=83000000M^-1
    2217 5lld:A (2.651) BS03 FMN ? GO:0005506 ... Q46877 27725182
    2218 5lmc:A (1.9) BS02 FMN ? GO:0005506 ... Q46877 27725182
    2219 5lni:A (1.133) BS01 FMN ? GO:0000166 ... A0A1X0ZT96 N/A
    2220 5lnk:1 (3.9) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 27595392
    2221 5lq4:A (2.65) BS01 FMN ? GO:0000166 ... B8HTZ1 27841750
    2222 5lq4:A (2.65) BS02 FMN ? GO:0000166 ... B8HTZ1 27841750
    2223 5lq4:B (2.65) BS01 FMN ? GO:0000166 ... B8HTZ1 27841750
    2224 5lq4:B (2.65) BS02 FMN ? GO:0000166 ... B8HTZ1 27841750
    2225 5lsm:A (2.5) BS01 FMN 1.13.12.16 GO:0000166 ... Q8EJJ2 N/A
    2226 5lsm:B (2.5) BS01 FMN 1.13.12.16 GO:0000166 ... Q8EJJ2 N/A
    2227 5lsm:C (2.5) BS01 FMN 1.13.12.16 GO:0000166 ... Q8EJJ2 N/A
    2228 5lsm:D (2.5) BS01 FMN 1.13.12.16 GO:0000166 ... Q8EJJ2 N/A
    2229 5lsm:E (2.5) BS01 FMN 1.13.12.16 GO:0000166 ... Q8EJJ2 N/A
    2230 5lsm:F (2.5) BS01 FMN 1.13.12.16 GO:0000166 ... Q8EJJ2 N/A
    2231 5lsm:G (2.5) BS01 FMN 1.13.12.16 GO:0000166 ... Q8EJJ2 N/A
    2232 5lsm:H (2.5) BS01 FMN 1.13.12.16 GO:0000166 ... Q8EJJ2 N/A
    2233 5lva:A (2.53) BS01 FMN ? GO:0000166 ... Q75V96 27714222
    2234 5lva:B (2.53) BS01 FMN ? GO:0000166 ... Q75V96 27714222
    2235 5m27:A (2.0) BS01 FMN N/A GO:0009190 ... N/A 28336405
    2236 5m27:B (2.0) BS01 FMN N/A GO:0009190 ... N/A 28336405
    2237 5m2a:A (1.8) BS01 FMN N/A GO:0009190 ... N/A 28336405
    2238 5m2a:B (1.8) BS01 FMN N/A GO:0009190 ... N/A 28336405
    2239 5m42:A (2.2) BS01 FMN 1.5.5.2 GO:0004657 ... Q72IB8 28256579 MOAD: Kd=19.5nM
    2240 5mbb:A (3.1) BS01 FMN N/A GO:0009190 ... N/A 28336405
    2241 5mbb:B (3.1) BS01 FMN N/A GO:0009190 ... N/A 28336405
    2242 5mbc:A (1.8) BS01 FMN N/A GO:0009190 ... N/A 28336405
    2243 5mbc:B (1.8) BS01 FMN N/A GO:0009190 ... N/A 28336405
    2244 5mbd:A (2.25) BS01 FMN N/A GO:0009190 ... N/A 28336405
    2245 5mbd:B (2.25) BS01 FMN N/A GO:0009190 ... N/A 28336405
    2246 5mbe:A (2.4) BS01 FMN N/A GO:0009190 ... N/A 28336405
    2247 5mbe:B (2.4) BS01 FMN N/A GO:0009190 ... N/A 28336405
    2248 5mbh:A (2.4) BS01 FMN N/A GO:0009190 ... N/A 28336405
    2249 5mbj:A (2.3) BS01 FMN N/A GO:0009190 ... N/A 28336405
    2250 5mut:A (1.75) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 28235702
    2251 5mvc:A (1.85) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 28235702
    2252 5mvd:A (1.95) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 28235702
    2253 5n6g:A (1.58) BS01 FMN ? GO:0000166 ... O31246 28485453
    2254 5n6q:A (2.2) BS02 FMN ? GO:0000166 ... Q9R9V9 28485453
    2255 5n6q:B (2.2) BS01 FMN ? GO:0000166 ... Q9R9V9 28485453
    2256 5nby:A (2.5) BS01 FMN N/A GO:0009190 ... N/A 28336405
    2257 5nll:A (1.75) BS01 FMN ? GO:0009055 ... P00322 9063874
    2258 5nul:A (1.6) BS01 FMN ? GO:0009055 ... P00322 9063874
    2259 5nux:A (2.3) BS01 FMN ? GO:0000166 ... B0JDW3 N/A
    2260 5nux:B (2.3) BS01 FMN ? GO:0000166 ... B0JDW3 N/A
    2261 5nux:C (2.3) BS01 FMN ? GO:0000166 ... B0JDW3 N/A
    2262 5nux:D (2.3) BS01 FMN ? GO:0000166 ... B0JDW3 N/A
    2263 5o31:F (4.13) BS01 FMN 7.1.1.2 GO:0005739 ... P25708 29395787
    2264 5ocs:A (1.7) BS01 FMN 1.6.99.1 GO:0000166 ... Q1LDQ5 28833623
    2265 5ocs:C (1.7) BS01 FMN 1.6.99.1 GO:0000166 ... Q1LDQ5 28833623
    2266 5ogt:A (2.3) BS01 FMN ? GO:0000166 ... E8PRF1 N/A
    2267 5ogt:B (2.3) BS01 FMN ? GO:0000166 ... E8PRF1 N/A
    2268 5ogt:C (2.3) BS01 FMN ? GO:0000166 ... E8PRF1 N/A
    2269 5ogt:D (2.3) BS01 FMN ? GO:0000166 ... E8PRF1 N/A
    2270 5qic:A (1.34) BS01 FMN 1.1.3.15
    1.2.3.5
    GO:0001561 ... Q9UJM8 N/A
    2271 5qid:A (1.45) BS01 FMN 1.1.3.15
    1.2.3.5
    GO:0001561 ... Q9UJM8 N/A
    2272 5qie:A (1.34) BS01 FMN 1.1.3.15
    1.2.3.5
    GO:0001561 ... Q9UJM8 N/A
    2273 5qif:A (1.2) BS01 FMN 1.1.3.15
    1.2.3.5
    GO:0001561 ... Q9UJM8 N/A
    2274 5qig:A (1.42) BS01 FMN 1.1.3.15
    1.2.3.5
    GO:0001561 ... Q9UJM8 N/A
    2275 5qih:A (1.33) BS01 FMN 1.1.3.15
    1.2.3.5
    GO:0001561 ... Q9UJM8 N/A
    2276 5svg:A (2.5) BS01 FMN ? N/A Q94BT6 28244872
    2277 5svg:B (2.5) BS01 FMN ? N/A Q94BT6 28244872
    2278 5svg:C (2.5) BS01 FMN ? N/A Q94BT6 28244872
    2279 5svg:D (2.5) BS01 FMN ? N/A Q94BT6 28244872
    2280 5svu:A (2.601) BS01 FMN ? N/A Q94BT6 28244872
    2281 5svu:B (2.601) BS01 FMN ? N/A Q94BT6 28244872
    2282 5svu:C (2.601) BS01 FMN ? N/A Q94BT6 28244872
    2283 5svu:D (2.601) BS01 FMN ? N/A Q94BT6 28244872
    2284 5svv:A (2.101) BS01 FMN ? N/A Q94BT6 28244872
    2285 5svv:B (2.101) BS01 FMN ? N/A Q94BT6 28244872
    2286 5svv:C (2.101) BS01 FMN ? N/A Q94BT6 28244872
    2287 5svv:D (2.101) BS01 FMN ? N/A Q94BT6 28244872
    2288 5svw:A (2.29) BS01 FMN ? N/A Q94BT6 28244872
    2289 5svw:B (2.29) BS01 FMN ? N/A Q94BT6 28244872
    2290 5svw:C (2.29) BS01 FMN ? N/A Q94BT6 28244872
    2291 5svw:D (2.29) BS01 FMN ? N/A Q94BT6 28244872
    2292 5svw:D (2.29) BS02 FMN ? N/A Q94BT6 28244872
    2293 5tbo:A (2.151) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 27641613
    2294 5tgz:A (2.8) BS02 FMN ? GO:0004930 ... P00323
    P21554
    27768894
    2295 5ue9:A (2.72) BS01 FMN 1.3.1.14 GO:0004152 ... Q9CFW8 N/A
    2296 5ue9:C (2.72) BS01 FMN 1.3.1.14 GO:0004152 ... Q9CFW8 N/A
    2297 5ull:A (1.8) BS01 FMN ? GO:0009055 ... P00322 9063874
    2298 5urd:A (1.9) BS01 FMN 1.6.2.4 GO:0003420 ... P00388 29308883
    2299 5urd:B (1.9) BS01 FMN 1.6.2.4 GO:0003420 ... P00388 29308883
    2300 5ure:A (2.3) BS01 FMN 1.6.2.4 GO:0003420 ... P00388 29308883
    2301 5ure:B (2.3) BS01 FMN 1.6.2.4 GO:0003420 ... P00388 29308883
    2302 5urg:A (2.3) BS01 FMN 1.6.2.4 GO:0003420 ... P00388 29308883
    2303 5urg:B (2.3) BS01 FMN 1.6.2.4 GO:0003420 ... P00388 29308883
    2304 5urh:A (2.5) BS01 FMN 1.6.2.4 GO:0003420 ... P00388 29308883
    2305 5urh:B (2.5) BS01 FMN 1.6.2.4 GO:0003420 ... P00388 29308883
    2306 5uri:A (2.7) BS01 FMN 1.6.2.4 GO:0003420 ... P00388 29308883
    2307 5uri:B (2.7) BS01 FMN 1.6.2.4 GO:0003420 ... P00388 29308883
    2308 5uu6:A (1.95) BS01 FMN ? GO:0000166 ... Q87FS7 N/A
    2309 5uu6:A (1.95) BS02 FMN ? GO:0000166 ... Q87FS7 N/A
    2310 5uu6:B (1.95) BS01 FMN ? GO:0000166 ... Q87FS7 N/A
    2311 5uu6:B (1.95) BS02 FMN ? GO:0000166 ... Q87FS7 N/A
    2312 5uu6:C (1.95) BS01 FMN ? GO:0000166 ... Q87FS7 N/A
    2313 5uu6:C (1.95) BS02 FMN ? GO:0000166 ... Q87FS7 N/A
    2314 5uu6:D (1.95) BS01 FMN ? GO:0000166 ... Q87FS7 N/A
    2315 5uu6:D (1.95) BS02 FMN ? GO:0000166 ... Q87FS7 N/A
    2316 5v4p:A (1.88) BS01 FMN 1.6.99.1 GO:0003959 ... P41816 N/A
    2317 5v4p:B (1.88) BS01 FMN 1.6.99.1 GO:0003959 ... P41816 N/A
    2318 5v4v:A (1.798) BS01 FMN 1.6.99.1 GO:0003959 ... P41816 N/A
    2319 5v4v:B (1.798) BS01 FMN 1.6.99.1 GO:0003959 ... P41816 N/A
    2320 5v56:A (2.9) BS02 FMN ? GO:0004888 ... P00323
    Q99835
    28513578
    2321 5v56:B (2.9) BS02 FMN ? GO:0004888 ... P00323
    Q99835
    28513578
    2322 5v57:A (3.0) BS02 FMN ? GO:0004888 ... P00323
    Q99835
    28513578
    2323 5v57:B (3.0) BS02 FMN ? GO:0004888 ... P00323
    Q99835
    28513578
    2324 5veg:A (1.99) BS01 FMN ? GO:0000166 ... A5VM92 28956602
    2325 5veg:B (1.99) BS01 FMN ? GO:0000166 ... A5VM92 28956602
    2326 5veg:C (1.99) BS01 FMN ? GO:0000166 ... A5VM92 28956602
    2327 5w4y:A (1.9) BS01 FMN ? GO:0000166 ... A0A3B6UEK8 N/A
    2328 5w4y:B (1.9) BS01 FMN ? GO:0000166 ... A0A3B6UEK8 N/A
    2329 5wan:A (1.798) BS02 FMN 1.14.99.46 GO:0004497 ... P75898 20369853
    2330 5wid:A (1.681) BS01 FMN ? GO:0000166 ... Q8TPV5 31801875
    2331 5wid:B (1.681) BS01 FMN ? GO:0000166 ... Q8TPV5 31801875
    2332 5wid:C (1.681) BS01 FMN ? GO:0000166 ... Q8TPV5 31801875
    2333 5x4t:A (1.601) BS01 FMN ? GO:0004016 ... K9TLZ5 28739908
    2334 5x4u:A (1.8) BS01 FMN ? GO:0004016 ... K9TLZ5 28739908
    2335 5xdb:A (1.811) BS01 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2336 5xdb:A (1.811) BS02 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2337 5xdb:B (1.811) BS01 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2338 5xdb:B (1.811) BS02 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2339 5xdb:C (1.811) BS01 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2340 5xdb:C (1.811) BS02 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2341 5xdb:D (1.811) BS01 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2342 5xdb:D (1.811) BS02 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2343 5xdd:A (1.9) BS01 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2344 5xdd:A (1.9) BS02 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2345 5xdd:B (1.9) BS01 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2346 5xdd:B (1.9) BS02 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2347 5xdd:C (1.9) BS01 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2348 5xdd:C (1.9) BS03 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2349 5xdd:D (1.9) BS01 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2350 5xdd:D (1.9) BS02 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2351 5xde:A (1.6) BS01 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2352 5xde:A (1.6) BS02 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2353 5xde:B (1.6) BS01 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2354 5xde:B (1.6) BS02 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2355 5xde:C (1.6) BS01 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2356 5xde:C (1.6) BS03 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2357 5xde:D (1.6) BS01 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2358 5xde:D (1.6) BS02 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2359 5xdg:A (1.747) BS01 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2360 5xdg:A (1.747) BS03 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2361 5xdg:B (1.747) BS01 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2362 5xdg:B (1.747) BS02 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2363 5xdg:C (1.747) BS01 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2364 5xdg:C (1.747) BS03 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2365 5xdg:D (1.747) BS01 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2366 5xdg:D (1.747) BS02 FMN 1.14.14.21 GO:0000166 ... Q9LBX2 28768765
    2367 5xf9:A (2.58) BS01 FMN ? GO:0000166 ... A0A077L6X8 28860386
    2368 5xf9:E (2.58) BS01 FMN ? GO:0000166 ... A0A077L6X8 28860386
    2369 5xfv:A (1.79) BS01 FMN 1.3.98.1 GO:0004152 ... Q57U83 29632820 MOAD: Kd=0.000000012uM
    2370 5xfv:B (1.79) BS01 FMN 1.3.98.1 GO:0004152 ... Q57U83 29632820 MOAD: Kd=0.000000012uM
    2371 5xfv:C (1.79) BS01 FMN 1.3.98.1 GO:0004152 ... Q57U83 29632820 MOAD: Kd=0.000000012uM
    2372 5xfv:D (1.79) BS01 FMN 1.3.98.1 GO:0004152 ... Q57U83 29632820 MOAD: Kd=0.000000012uM
    2373 5xkd:A (2.393) BS01 FMN 1.14.14.22 GO:0000166 ... Q8GRC7 29497411
    2374 5xkd:B (2.393) BS01 FMN 1.14.14.22 GO:0000166 ... Q8GRC7 29497411
    2375 5xkd:C (2.393) BS01 FMN 1.14.14.22 GO:0000166 ... Q8GRC7 29497411
    2376 5xkd:D (2.393) BS01 FMN 1.14.14.22 GO:0000166 ... Q8GRC7 29497411
    2377 5xr8:A (2.95) BS01 FMN ? GO:0004930 ... P00323
    P21554
    28678776
    2378 5xra:A (2.8) BS01 FMN ? GO:0004930 ... P00323
    P21554
    28678776
    2379 5xtb:A (3.4) BS02 FMN 7.1.1.2 GO:0005515 ... P49821 28844695
    2380 5xtd:A (3.7) BS02 FMN 7.1.1.2 GO:0005515 ... P49821 28844695
    2381 5xth:A (3.9) BS02 FMN 7.1.1.2 GO:0005515 ... P49821 28844695
    2382 5xti:A (17.4) BS02 FMN 7.1.1.2 GO:0005515 ... P49821 28844695
    2383 5xti:BA (17.4) BS02 FMN 7.1.1.2 GO:0005515 ... P49821 28844695
    2384 5yak:A (2.3) BS01 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    2385 5yak:A (2.3) BS03 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    2386 5yak:B (2.3) BS01 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    2387 5yak:B (2.3) BS03 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    2388 5yak:C (2.3) BS01 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    2389 5yak:C (2.3) BS03 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    2390 5yak:D (2.3) BS01 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    2391 5yak:D (2.3) BS03 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    2392 5yak:E (2.3) BS01 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    2393 5yak:E (2.3) BS03 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    2394 5yak:F (2.3) BS01 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    2395 5yak:F (2.3) BS03 FMN 1.21.1.1 GO:0016491 ... Q6PHW0 30052294
    2396 5yob:A (1.142) BS01 FMN ? GO:0009055 ... P00323 29039033
    2397 5yoc:A (1.5) BS01 FMN ? GO:0009055 ... P00323 29039033
    2398 5yoe:A (1.35) BS01 FMN ? GO:0009055 ... P00323 29039033
    2399 5yog:A (1.42) BS01 FMN ? GO:0009055 ... P00323 29039033
    2400 5zbm:A (2.8) BS01 FMN 1.1.3.15 GO:0000166 ... E1AXT8 30143257

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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