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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1tg6:A (2.1) BS01 FME 3.4.21.92 GO:0004175 ... Q16740 15522782
    2 1tg6:B (2.1) BS01 FME 3.4.21.92 GO:0004175 ... Q16740 15522782
    3 1tg6:C (2.1) BS01 FME 3.4.21.92 GO:0004175 ... Q16740 15522782
    4 1tg6:D (2.1) BS01 FME 3.4.21.92 GO:0004175 ... Q16740 15522782
    5 1tg6:E (2.1) BS01 FME 3.4.21.92 GO:0004175 ... Q16740 15522782
    6 1tg6:F (2.1) BS01 FME 3.4.21.92 GO:0004175 ... Q16740 15522782
    7 1tg6:G (2.1) BS01 FME 3.4.21.92 GO:0004175 ... Q16740 15522782
    8 2fmt:A (2.8) BS02 FME 2.1.2.9 GO:0003824 ... P23882 9843487
    9 2fmt:B (2.8) BS02 FME 2.1.2.9 GO:0003824 ... P23882 9843487
    10 3jcj:f (3.7) BS05 FME ? GO:0003743 ... P0A705 26973877
    11 3jcn:b (4.6) BS05 FME ? GO:0003743 ... P0A705 26973877
    12 4nt8:A (2.2) BS01 FME 3.5.1.88 GO:0042586 ... Q5H3Z2 N/A
    13 5lmv:a (4.9) BS03 FME ? GO:0003743 ... P48515 27662086
    14 5me0:W (13.5) BS03 FME ? GO:0003743 ... P0A705 27986852
    15 5me1:W (13.5) BS03 FME ? GO:0003743 ... P0A705 27986852
    16 6gaw:BC (3.2) BS06 FME ? GO:0003743 ... P46199 30089917
    17 6gaz:BC (3.1) BS05 FME ? GO:0003743 ... P46199 30089917
    18 6gb2:BC (3.2) BS05 FME ? GO:0003743 ... P46199 30089917
    19 6wj6:I (2.58) BS02 FME ? GO:0005737 ... Q54697 N/A
    20 7po2:7 (3.09) BS03 FME ? GO:0003723 ... P46199 35676484
    21 7unv:x (2.7) BS04 FME ? GO:0003743 ... Q9HV55 N/A
    22 7unw:x (2.6) BS04 FME ? GO:0003743 ... Q9HV55 N/A
    23 8qrn:7 (2.98) BS03 FME N/A GO:0003723 ... P46199 38969660
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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