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BioLiP
Download all results in tab-seperated text for 74 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bkf:A (1.6) BS01 FK5 5.2.1.8 GO:0000413 ... P62942 N/A MOAD: Ki=2.1nM
    BindingDB: Kd=0.200000nM, EC50=0.900000nM, Ki=0.40nM, IC50=2.3nM
    2 1fkf:A (1.7) BS01 FK5 5.2.1.8 GO:0000413 ... P62942 1709302 MOAD: Kd=0.4nM
    PDBbind: -logKd/Ki=9.40, Kd=0.4nM
    BindingDB: Kd=0.200000nM, EC50=0.900000nM, Ki=0.40nM, IC50=2.3nM
    3 1fkj:A (1.7) BS01 FK5 5.2.1.8 GO:0000413 ... P62942 15299838 BindingDB: Kd=0.200000nM, EC50=0.900000nM, Ki=0.40nM, IC50=2.3nM
    4 1q6i:A (2.25) BS01 FK5 5.2.1.8 GO:0003755 ... P45523 14672666
    5 1q6i:B (2.25) BS01 FK5 5.2.1.8 GO:0003755 ... P45523 14672666
    6 1tco:A (2.5) BS03 FK5 3.1.3.16 GO:0016787 ... P48452 7543369
    7 1tco:B (2.5) BS05 FK5 3.1.3.16 GO:0005509 ... P63099 7543369
    8 1tco:C (2.5) BS01 FK5 5.2.1.8 GO:0000413 ... P18203 7543369
    9 1yat:A (2.5) BS01 FK5 5.2.1.8 GO:0001228 ... P20081 7681823
    10 2fke:A (1.72) BS01 FK5 5.2.1.8 GO:0000413 ... P62942 7684380 BindingDB: Kd=0.200000nM, EC50=0.900000nM, Ki=0.40nM, IC50=2.3nM
    11 2vn1:A (2.35) BS01 FK5 5.2.1.8 GO:0003755 ... Q8I4V8 18465874
    12 2vn1:B (2.35) BS01 FK5 5.2.1.8 GO:0003755 ... Q8I4V8 18465874
    13 2vn1:B (2.35) BS02 FK5 5.2.1.8 GO:0003755 ... Q8I4V8 18465874
    14 3ihz:A (1.67) BS01 FK5 5.2.1.8 GO:0003755 ... A5K8X6 20572013 MOAD: ic50=160nM
    PDBbind: -logKd/Ki=6.80, IC50=160nM
    15 3ihz:B (1.67) BS01 FK5 5.2.1.8 GO:0003755 ... A5K8X6 20572013 PDBbind: -logKd/Ki=6.80, IC50=160nM
    16 3o5r:A (1.1) BS01 FK5 5.2.1.8 GO:0003755 ... Q13451 21636895 BindingDB: Ki=79nM
    17 3uf8:A (1.5) BS01 FK5 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38    		 24366729
    18 3uqa:A (1.55) BS01 FK5 5.2.1.8 GO:0003755 ... Q12306
    Q63J95    		 24366729
    19 3uqb:A (1.9) BS01 FK5 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38    		 24366729
    20 3vaw:A (1.55) BS01 FK5 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38    		 24366729
    21 4dz2:A (2.0) BS01 FK5 5.2.1.8 GO:0003755 ... Q3JK38 24366729
    22 4dz2:A (2.0) BS03 FK5 5.2.1.8 GO:0003755 ... Q3JK38 24366729
    23 4dz2:B (2.0) BS01 FK5 5.2.1.8 GO:0003755 ... Q3JK38 24366729
    24 4dz2:B (2.0) BS02 FK5 5.2.1.8 GO:0003755 ... Q3JK38 24366729
    25 4dz3:A (2.0) BS01 FK5 5.2.1.8 GO:0003755 ... Q3JK38 24366729
    26 4dz3:B (2.0) BS02 FK5 5.2.1.8 GO:0003755 ... Q3JK38 24366729
    27 4lax:A (2.007) BS01 FK5 5.2.1.8 GO:0003755 ... Q02790 23933011
    28 4nnr:A (1.98) BS01 FK5 5.2.1.8 GO:0000413 ... P26885 N/A PDBbind: -logKd/Ki=7.26, Kd=55nM
    29 4nnr:B (1.98) BS01 FK5 5.2.1.8 GO:0000413 ... P26885 N/A
    30 4odo:A (1.599) BS01 FK5 5.2.1.8 GO:0003755 ... Q5SLE7 27664121
    31 4odo:B (1.599) BS01 FK5 5.2.1.8 GO:0003755 ... Q5SLE7 27664121
    32 4odo:C (1.599) BS01 FK5 5.2.1.8 GO:0003755 ... Q5SLE7 27664121
    33 4odo:C (1.599) BS02 FK5 5.2.1.8 GO:0003755 ... Q5SLE7 27664121
    34 4odo:C (1.599) BS03 FK5 5.2.1.8 GO:0003755 ... Q5SLE7 27664121
    35 4odr:A (1.929) BS01 FK5 5.2.1.8 GO:0003755 ... P62942
    Q5SLE7    		 27664121
    36 4odr:B (1.929) BS01 FK5 5.2.1.8 GO:0003755 ... P62942
    Q5SLE7    		 27664121
    37 5b8i:A (1.85) BS03 FK5 3.1.3.16 GO:0016787 ... J3K8M7 31537789
    38 5b8i:B (1.85) BS05 FK5 ? GO:0005509 ... A0A0D8JSK0 31537789
    39 5b8i:C (1.85) BS01 FK5 5.2.1.8 GO:0000413 ... J3K5Z5 31537789
    40 5d75:A (1.83) BS01 FK5 5.2.1.8 GO:0003755 ... Q00688 26749369 MOAD: Ki=200nM
    PDBbind: -logKd/Ki=6.70, Ki=200nM
    41 5hua:A (1.3) BS01 FK5 5.2.1.8 GO:0000413 ... Q6FMA3 27118592
    42 5hw8:A (2.86) BS01 FK5 5.2.1.8 GO:0001228 ... P28870 27118592
    43 5hw8:B (2.86) BS01 FK5 5.2.1.8 GO:0001228 ... P28870 27118592
    44 5hw8:C (2.86) BS01 FK5 5.2.1.8 GO:0001228 ... P28870 27118592
    45 5hw8:D (2.86) BS01 FK5 5.2.1.8 GO:0001228 ... P28870 27118592
    46 5hw8:E (2.86) BS01 FK5 5.2.1.8 GO:0001228 ... P28870 27118592
    47 5hw8:F (2.86) BS01 FK5 5.2.1.8 GO:0001228 ... P28870 27118592
    48 5hw8:G (2.86) BS01 FK5 5.2.1.8 GO:0001228 ... P28870 27118592
    49 5hw8:H (2.86) BS01 FK5 5.2.1.8 GO:0001228 ... P28870 27118592
    50 5hwc:A (2.05) BS01 FK5 5.2.1.8 GO:0003755 ... Q4WLV6 27118592
    51 6j2m:A (1.13) BS01 FK5 5.2.1.8 GO:0003755 ... Q93ZG9 31807785
    52 6mke:A (2.05) BS01 FK5 5.2.1.8 GO:0000413 ... A0A2H4A315 N/A
    53 6mke:A (2.05) BS02 FK5 5.2.1.8 GO:0000413 ... A0A2H4A315 N/A
    54 6mke:B (2.05) BS01 FK5 5.2.1.8 GO:0000413 ... A0A2H4A315 N/A
    55 6mke:C (2.05) BS01 FK5 5.2.1.8 GO:0000413 ... A0A2H4A315 N/A
    56 6mke:D (2.05) BS01 FK5 5.2.1.8 GO:0000413 ... A0A2H4A315 N/A
    57 6tz6:A (2.55) BS03 FK5 3.1.3.16 GO:0016787 ... C4YFI3 31537789
    58 6tz6:C (2.55) BS01 FK5 5.2.1.8 GO:0001228 ... P28870 31537789
    59 6tz6:D (2.55) BS03 FK5 3.1.3.16 GO:0016787 ... C4YFI3 31537789
    60 6tz6:F (2.55) BS01 FK5 5.2.1.8 GO:0001228 ... P28870 31537789
    61 6tz7:A (2.5) BS03 FK5 3.1.3.16 GO:0016787 ... Q4WUR1 31537789
    62 6tz7:B (2.5) BS04 FK5 ? GO:0000747 ... Q4WDF2 31537789
    63 6tz7:C (2.5) BS01 FK5 5.2.1.8 GO:0003755 ... Q4WLV6 31537789
    64 6tz8:A (3.3) BS03 FK5 3.1.3.16 GO:0016787 ... O42773 31537789
    65 6tz8:C (3.3) BS01 FK5 5.2.1.8 GO:0000413 ... O94746 31537789
    66 6tz8:D (3.3) BS03 FK5 3.1.3.16 GO:0016787 ... O42773 31537789
    67 6tz8:F (3.3) BS01 FK5 5.2.1.8 GO:0000413 ... O94746 31537789
    68 6vrx:A (2.54) BS01 FK5 5.2.1.8 GO:0000413 ... U3N5X4 34809463
    69 6vrx:B (2.54) BS01 FK5 5.2.1.8 GO:0000413 ... U3N5X4 34809463
    70 6vrx:C (2.54) BS01 FK5 5.2.1.8 GO:0000413 ... U3N5X4 34809463
    71 6vrx:C (2.54) BS02 FK5 5.2.1.8 GO:0000413 ... U3N5X4 34809463
    72 6vrx:D (2.54) BS01 FK5 5.2.1.8 GO:0000413 ... U3N5X4 34809463
    73 7u0u:A (1.9) BS05 FK5 3.1.3.16 GO:0005509 ... Q4WUR1 35604094
    74 7u0u:B (1.9) BS01 FK5 5.2.1.8 GO:0003755 ... Q4WLV6 35604094
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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