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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 161 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1av8:A (2.8) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 9558317
    2 1av8:B (2.8) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 9558317
    3 1e5d:A (2.5) BS02 FEO 1.-.-.- GO:0009055 ... Q9F0J6 11062560
    4 1e5d:B (2.5) BS02 FEO 1.-.-.- GO:0009055 ... Q9F0J6 11062560
    5 1hmd:A (2.0) BS01 FEO ? GO:0005344 ... P02246 2016748
    6 1hmd:B (2.0) BS01 FEO ? GO:0005344 ... P02246 2016748
    7 1hmd:C (2.0) BS01 FEO ? GO:0005344 ... P02246 2016748
    8 1hmd:D (2.0) BS01 FEO ? GO:0005344 ... P02246 2016748
    9 1hmo:A (2.0) BS01 FEO ? GO:0005344 ... P02246 2016748
    10 1hmo:B (2.0) BS01 FEO ? GO:0005344 ... P02246 2016748
    11 1hmo:C (2.0) BS01 FEO ? GO:0005344 ... P02246 2016748
    12 1hmo:D (2.0) BS01 FEO ? GO:0005344 ... P02246 2016748
    13 1i4y:A (1.8) BS01 FEO ? GO:0005344 ... P02244 11372200
    14 1i4y:B (1.8) BS01 FEO ? GO:0005344 ... P02244 11372200
    15 1i4y:C (1.8) BS01 FEO ? GO:0005344 ... P02244 11372200
    16 1i4y:D (1.8) BS01 FEO ? GO:0005344 ... P02244 11372200
    17 1i4y:E (1.8) BS01 FEO ? GO:0005344 ... P02244 11372200
    18 1i4y:F (1.8) BS01 FEO ? GO:0005344 ... P02244 11372200
    19 1i4y:G (1.8) BS01 FEO ? GO:0005344 ... P02244 11372200
    20 1i4y:H (1.8) BS01 FEO ? GO:0005344 ... P02244 11372200
    21 1i4z:A (2.1) BS01 FEO ? GO:0005344 ... P02244 11372200
    22 1i4z:B (2.1) BS01 FEO ? GO:0005344 ... P02244 11372200
    23 1i4z:C (2.1) BS01 FEO ? GO:0005344 ... P02244 11372200
    24 1i4z:D (2.1) BS01 FEO ? GO:0005344 ... P02244 11372200
    25 1i4z:E (2.1) BS01 FEO ? GO:0005344 ... P02244 11372200
    26 1i4z:F (2.1) BS01 FEO ? GO:0005344 ... P02244 11372200
    27 1i4z:G (2.1) BS01 FEO ? GO:0005344 ... P02244 11372200
    28 1i4z:H (2.1) BS01 FEO ? GO:0005344 ... P02244 11372200
    29 1n1q:A (2.2) BS01 FEO 1.16.-.- GO:0003677 ... P83695 12767829
    30 1n1q:A (2.2) BS02 FEO 1.16.-.- GO:0003677 ... P83695 12767829
    31 1n1q:B (2.2) BS01 FEO 1.16.-.- GO:0003677 ... P83695 12767829
    32 1n1q:B (2.2) BS02 FEO 1.16.-.- GO:0003677 ... P83695 12767829
    33 1n1q:C (2.2) BS01 FEO 1.16.-.- GO:0003677 ... P83695 12767829
    34 1n1q:C (2.2) BS02 FEO 1.16.-.- GO:0003677 ... P83695 12767829
    35 1n1q:D (2.2) BS01 FEO 1.16.-.- GO:0003677 ... P83695 12767829
    36 1n1q:D (2.2) BS02 FEO 1.16.-.- GO:0003677 ... P83695 12767829
    37 1rib:A (2.2) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 8331655
    38 1rib:B (2.2) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 8331655
    39 1ute:A (1.55) BS01 FEO 3.1.3.2 GO:0003993 ... P09889 10425678
    40 1vme:A (1.8) BS01 FEO ? GO:0009055 ... Q9WZL4 N/A
    41 1vme:B (1.8) BS01 FEO ? GO:0009055 ... Q9WZL4 N/A
    42 1w68:A (2.2) BS01 FEO 1.17.4.1 GO:0001824 ... P11157 15322079
    43 1ycf:A (3.0) BS02 FEO 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    44 1ycf:B (3.0) BS02 FEO 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    45 1ycf:C (3.0) BS01 FEO 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    46 1ycf:D (3.0) BS02 FEO 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    47 1ycg:A (2.8) BS02 FEO 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    48 1ycg:B (2.8) BS03 FEO 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    49 1ycg:C (2.8) BS02 FEO 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    50 1ycg:D (2.8) BS02 FEO 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    51 1ych:A (2.8) BS02 FEO 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    52 1ych:B (2.8) BS03 FEO 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    53 1ych:C (2.8) BS02 FEO 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    54 1ych:D (2.8) BS03 FEO 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    55 1yfd:A (1.9) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 15634667
    56 1yfd:B (1.9) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 15634667
    57 2av8:A (2.46) BS02 FEO 1.17.4.1 GO:0004748 ... P69924 9558317
    58 2av8:B (2.46) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 9558317
    59 2awc:A (2.2) BS01 FEO ? GO:0046872 ... Q9REU3 16866347
    60 2awy:A (2.1) BS01 FEO ? GO:0046872 ... Q9REU3 16866347
    61 2awy:B (2.1) BS01 FEO ? GO:0046872 ... Q9REU3 16866347
    62 2hmq:A (1.66) BS01 FEO ? GO:0005344 ... P02246 1870128
    63 2hmq:B (1.66) BS01 FEO ? GO:0005344 ... P02246 1870128
    64 2hmq:C (1.66) BS01 FEO ? GO:0005344 ... P02246 1870128
    65 2hmq:D (1.66) BS01 FEO ? GO:0005344 ... P02246 1870128
    66 2mhr:A (1.3) BS04 FEO ? GO:0005344 ... P02247 3681996
    67 2q9u:A (1.9) BS02 FEO ? GO:0000166 ... Q86QZ1 18077462
    68 2q9u:B (1.9) BS02 FEO ? GO:0000166 ... Q86QZ1 18077462
    69 2r2f:A (2.25) BS01 FEO 1.17.4.1 GO:0004748 ... P17424 9748343
    70 2r2f:B (2.25) BS01 FEO 1.17.4.1 GO:0004748 ... P17424 9748343
    71 2xof:A (2.2) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 20929229
    72 2xof:B (2.2) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 20929229
    73 3chh:A (2.0) BS01 FEO 1.14.99.68 GO:0016491 ... Q70KH9 18458342
    74 3chh:B (2.0) BS01 FEO 1.14.99.68 GO:0016491 ... Q70KH9 18458342
    75 3chi:A (2.1) BS01 FEO 1.14.99.68 GO:0016491 ... Q70KH9 18458342
    76 3chi:B (2.1) BS01 FEO 1.14.99.68 GO:0016491 ... Q70KH9 18458342
    77 3cht:A (2.0) BS01 FEO 1.14.99.68 GO:0016491 ... Q70KH9 18458342
    78 3cht:B (2.0) BS01 FEO 1.14.99.68 GO:0016491 ... Q70KH9 18458342
    79 3chu:A (2.2) BS01 FEO 1.14.99.68 GO:0016491 ... Q70KH9 18458342
    80 3chu:B (2.2) BS01 FEO 1.14.99.68 GO:0016491 ... Q70KH9 18458342
    81 3mps:A (2.0) BS02 FEO ? GO:0005506 ... Q9UWP7 21647777
    82 3mps:A (2.0) BS03 FEO ? GO:0005506 ... Q9UWP7 21647777
    83 3mps:B (2.0) BS01 FEO ? GO:0005506 ... Q9UWP7 21647777
    84 3mps:B (2.0) BS03 FEO ? GO:0005506 ... Q9UWP7 21647777
    85 3mps:D (2.0) BS04 FEO ? GO:0005506 ... Q9UWP7 21647777
    86 3mps:F (2.0) BS05 FEO ? GO:0005506 ... Q9UWP7 21647777
    87 3mps:I (2.0) BS03 FEO ? GO:0005506 ... Q9UWP7 21647777
    88 3mps:K (2.0) BS03 FEO ? GO:0005506 ... Q9UWP7 21647777
    89 3v5x:A (1.85) BS01 FEO ? GO:0006879 ... Q9UKA1 22253436
    90 3v5x:B (1.85) BS01 FEO ? GO:0006879 ... Q9UKA1 22253436
    91 3v5y:A (2.1) BS01 FEO ? GO:0006879 ... Q9UKA1 22253436
    92 3v5y:B (2.1) BS01 FEO ? GO:0006879 ... Q9UKA1 22253436
    93 3v5y:C (2.1) BS01 FEO ? GO:0006879 ... Q9UKA1 22253436
    94 3v5y:D (2.1) BS01 FEO ? GO:0006879 ... Q9UKA1 22253436
    95 3v5z:A (2.1847) BS01 FEO ? GO:0006879 ... Q9UKA1 22253436
    96 3v5z:B (2.1847) BS01 FEO ? GO:0006879 ... Q9UKA1 22253436
    97 3waq:A (1.8) BS01 FEO ? GO:0046872 ... Q726F3 24187962
    98 3zwu:A (1.39) BS04 FEO 3.1.3.1 GO:0046872 ... Q3K5N8 25190793
    99 3zwu:B (1.39) BS04 FEO 3.1.3.1 GO:0046872 ... Q3K5N8 25190793
    100 4a9v:A (1.1) BS03 FEO 3.1.3.1 GO:0046872 ... Q3K5N8 25190793
    101 4a9x:A (1.79) BS05 FEO 3.1.3.1 GO:0046872 ... Q3K5N8 25190793
    102 4alf:A (1.25) BS05 FEO 3.1.3.1 GO:0046872 ... Q3K5N8 25190793
    103 4alf:B (1.25) BS05 FEO 3.1.3.1 GO:0046872 ... Q3K5N8 25190793
    104 4amf:A (1.52) BS05 FEO 3.1.3.1 GO:0046872 ... Q3K5N8 25190793
    105 4amf:B (1.52) BS05 FEO 3.1.3.1 GO:0046872 ... Q3K5N8 25190793
    106 4dik:A (1.75) BS01 FEO ? GO:0009055 ... Q9WZL4 22990880
    107 4dik:B (1.75) BS01 FEO ? GO:0009055 ... Q9WZL4 22990880
    108 4dil:A (2.0) BS01 FEO ? GO:0009055 ... Q9WZL4 22990880
    109 4dil:B (2.0) BS01 FEO ? GO:0009055 ... Q9WZL4 22990880
    110 4erm:E (3.95) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 22727814
    111 4erm:F (3.95) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 22727814
    112 4erm:G (3.95) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 22727814
    113 4erm:H (3.95) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 22727814
    114 4erp:E (4.45) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 22727814
    115 4erp:F (4.45) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 22727814
    116 4erp:G (4.45) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 22727814
    117 4erp:H (4.45) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 22727814
    118 4ztt:A (1.83) BS01 FEO 1.16.3.2 GO:0004322 ... P0A998 27777002
    119 4ztt:B (1.83) BS01 FEO 1.16.3.2 GO:0004322 ... P0A998 27777002
    120 4ztt:E (1.83) BS01 FEO 1.16.3.2 GO:0004322 ... P0A998 27777002
    121 5ci0:A (2.25) BS01 FEO N/A GO:0009263 ... N/A 27276098
    122 5ci1:A (1.95) BS01 FEO N/A GO:0009263 ... N/A 27276098
    123 5ci2:A (2.25) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 27276098
    124 5ci3:A (2.401) BS01 FEO 1.17.4.1 GO:0004748 ... P69925 27276098
    125 5ci4:A (2.05) BS01 FEO N/A GO:0009263 ... N/A 27276098
    126 5cns:E (2.975) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    127 5cns:F (2.975) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    128 5cns:G (2.975) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    129 5cns:H (2.975) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    130 5cnt:E (3.25) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    131 5cnt:F (3.25) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    132 5cnt:G (3.25) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    133 5cnt:H (3.25) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    134 5cnu:E (3.4) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    135 5cnu:F (3.4) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    136 5cnu:G (3.4) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    137 5cnu:H (3.4) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    138 5cnv:E (3.2) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    139 5cnv:F (3.2) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    140 5cnv:G (3.2) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    141 5cnv:H (3.2) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 26754917
    142 5kil:A (2.72) BS01 FEO 1.14.99.65 GO:0005737 ... F2RB80 27668828
    143 5lmc:A (1.9) BS01 FEO ? GO:0005506 ... Q46877 27725182
    144 5v8s:A (1.41) BS01 FEO ? GO:0009055 ... Q9WZL4 N/A
    145 5v8s:B (1.41) BS01 FEO ? GO:0009055 ... Q9WZL4 N/A
    146 6w4x:C (3.6) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 32217749
    147 6w4x:D (3.6) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 32217749
    148 6zlf:A (1.8) BS01 FEO ? GO:0000166 ... A0A452CSW8 32940290
    149 6zlf:F (1.8) BS02 FEO ? GO:0000166 ... A0A452CSW8 32940290
    150 6zlf:G (1.8) BS01 FEO ? GO:0000166 ... A0A452CSW8 32940290
    151 6zlf:H (1.8) BS01 FEO ? GO:0000166 ... A0A452CSW8 32940290
    152 6zlf:I (1.8) BS01 FEO ? GO:0000166 ... A0A452CSW8 32940290
    153 6zlf:J (1.8) BS01 FEO ? GO:0000166 ... A0A452CSW8 32940290
    154 6zlf:K (1.8) BS01 FEO ? GO:0000166 ... A0A452CSW8 32940290
    155 6zlf:L (1.8) BS01 FEO ? GO:0000166 ... A0A452CSW8 32940290
    156 7mdi:E (4.3) BS01 FEO 1.17.4.1 GO:0004748 ... Q5F8Z5 34906669
    157 7mdi:F (4.3) BS01 FEO 1.17.4.1 GO:0004748 ... Q5F8Z5 34906669
    158 7mdi:G (4.3) BS01 FEO 1.17.4.1 GO:0004748 ... Q5F8Z5 34906669
    159 7mdi:H (4.3) BS01 FEO 1.17.4.1 GO:0004748 ... Q5F8Z5 34906669
    160 7r2o:A (1.85) BS02 FEO ? GO:0005506 ... Q46877 N/A
    161 7r2o:B (1.85) BS02 FEO ? GO:0005506 ... Q46877 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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