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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 2bw1:H (1.81) BS01 FE 1.16.-.- GO:0005737 ... P0CB53 16997323
    1002 2bw1:I (1.81) BS01 FE 1.16.-.- GO:0005737 ... P0CB53 16997323
    1003 2bw1:J (1.81) BS01 FE 1.16.-.- GO:0005737 ... P0CB53 16997323
    1004 2bw1:K (1.81) BS01 FE 1.16.-.- GO:0005737 ... P0CB53 16997323
    1005 2bw1:L (1.81) BS01 FE 1.16.-.- GO:0005737 ... P0CB53 16997323
    1006 2c2j:A (2.05) BS01 FE 1.16.-.- GO:0008199 ... Q9RZN1 17583727
    1007 2c6r:A (2.1) BS01 FE 1.16.-.- GO:0008199 ... Q9RZN1 17583727
    1008 2c6r:A (2.1) BS02 FE 1.16.-.- GO:0008199 ... Q9RZN1 17583727
    1009 2cb2:A (1.7) BS01 FE 1.13.11.55 GO:0005737 ... P29082 16484493
    1010 2cb2:B (1.7) BS01 FE 1.13.11.55 GO:0005737 ... P29082 16484493
    1011 2cb2:C (1.7) BS01 FE 1.13.11.55 GO:0005737 ... P29082 16484493
    1012 2cb2:D (1.7) BS01 FE 1.13.11.55 GO:0005737 ... P29082 16484493
    1013 2cb2:E (1.7) BS01 FE 1.13.11.55 GO:0005737 ... P29082 16484493
    1014 2cb2:F (1.7) BS01 FE 1.13.11.55 GO:0005737 ... P29082 16484493
    1015 2cgn:A (2.4) BS01 FE 1.14.11.30
    1.14.11.n4
    GO:0003714 ... Q9NWT6 17135241
    1016 2cgo:A (2.3) BS01 FE 1.14.11.30
    1.14.11.n4
    GO:0003714 ... Q9NWT6 17135241
    1017 2ckf:A (1.85) BS02 FE ? GO:0005506 ... Q65AT1 17157819
    1018 2ckf:C (1.85) BS02 FE ? GO:0005506 ... Q65AT1 17157819
    1019 2ckf:E (1.85) BS02 FE ? GO:0005506 ... Q65AT1 17157819
    1020 2clb:A (2.4) BS02 FE 1.16.-.- GO:0004322 ... P95855 16953567
    1021 2clb:B (2.4) BS02 FE 1.16.-.- GO:0004322 ... P95855 16953567
    1022 2clb:C (2.4) BS02 FE 1.16.-.- GO:0004322 ... P95855 16953567
    1023 2clb:D (2.4) BS02 FE 1.16.-.- GO:0004322 ... P95855 16953567
    1024 2clb:M (2.4) BS02 FE 1.16.-.- GO:0004322 ... P95855 16953567
    1025 2clb:N (2.4) BS02 FE 1.16.-.- GO:0004322 ... P95855 16953567
    1026 2clb:O (2.4) BS02 FE 1.16.-.- GO:0004322 ... P95855 16953567
    1027 2clb:P (2.4) BS02 FE 1.16.-.- GO:0004322 ... P95855 16953567
    1028 2csg:A (2.9) BS01 FE ? GO:0046872 ... Q8ZQM7 N/A
    1029 2cw2:A (1.86) BS01 FE 1.15.1.1 GO:0004784 ... Q8ISJ0 17077482
    1030 2cw2:B (1.86) BS01 FE 1.15.1.1 GO:0004784 ... Q8ISJ0 17077482
    1031 2cw3:A (2.5) BS01 FE 1.15.1.1 GO:0004784 ... Q8ISI9 17077482
    1032 2cw3:B (2.5) BS01 FE 1.15.1.1 GO:0004784 ... Q8ISI9 17077482
    1033 2cyz:A (1.55) BS01 FE 4.2.1.84 GO:0003824 ... P13448 N/A
    1034 2cz0:A (1.5) BS01 FE 4.2.1.84 GO:0003824 ... P13448 N/A
    1035 2cz1:A (1.39) BS01 FE 4.2.1.84 GO:0003824 ... P13448 N/A
    1036 2cz6:A (1.5) BS01 FE 4.2.1.84 GO:0003824 ... P13448 N/A
    1037 2cz7:A (1.8) BS01 FE 4.2.1.84 GO:0003824 ... P13448 N/A
    1038 2d0q:A (1.65) BS01 FE 4.2.1.84 GO:0003824 ... P13448 N/A
    1039 2d40:A (2.41) BS01 FE 1.13.11.4 GO:0046872 ... Q8X655 16930152
    1040 2d40:B (2.41) BS01 FE 1.13.11.4 GO:0046872 ... Q8X655 16930152
    1041 2d40:C (2.41) BS01 FE 1.13.11.4 GO:0046872 ... Q8X655 16930152
    1042 2d40:D (2.41) BS01 FE 1.13.11.4 GO:0046872 ... Q8X655 16930152
    1043 2doj:A (2.4) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1044 2dp8:A (2.5) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1045 2dqv:A (2.7) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1046 2ds9:A (2.8) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1047 2dsf:A (2.8) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1048 2dsx:A (0.68) BS01 FE ? GO:0005506 ... P00270 16930541
    1049 2dvc:A (3.0) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1050 2dwa:A (2.07) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1051 2dwh:A (2.8) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1052 2dwi:A (2.2) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1053 2dwj:A (2.3) BS04 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1054 2dxr:A (2.85) BS03 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1055 2dxy:A (2.03) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1056 2dyx:A (2.0) BS03 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1057 2e0s:A (2.15) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1058 2e1s:A (2.7) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1059 2fa7:A (2.38) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1060 2fiy:A (2.1) BS01 FE ? GO:0005737 ... Q9HV00 N/A
    1061 2fiy:A (2.1) BS02 FE ? GO:0005737 ... Q9HV00 N/A
    1062 2fiy:B (2.1) BS01 FE ? GO:0005737 ... Q9HV00 N/A
    1063 2fiy:B (2.1) BS02 FE ? GO:0005737 ... Q9HV00 N/A
    1064 2fiy:B (2.1) BS03 FE ? GO:0005737 ... Q9HV00 N/A
    1065 2fjc:A (2.5) BS01 FE ? GO:0008199 ... P16665 16345079
    1066 2fjc:A (2.5) BS02 FE ? GO:0008199 ... P16665 16345079
    1067 2fjc:B (2.5) BS01 FE ? GO:0008199 ... P16665 16345079
    1068 2fjc:B (2.5) BS02 FE ? GO:0008199 ... P16665 16345079
    1069 2fjc:C (2.5) BS01 FE ? GO:0008199 ... P16665 16345079
    1070 2fjc:C (2.5) BS02 FE ? GO:0008199 ... P16665 16345079
    1071 2fjc:D (2.5) BS01 FE ? GO:0008199 ... P16665 16345079
    1072 2fjc:D (2.5) BS02 FE ? GO:0008199 ... P16665 16345079
    1073 2fjc:E (2.5) BS01 FE ? GO:0008199 ... P16665 16345079
    1074 2fjc:E (2.5) BS02 FE ? GO:0008199 ... P16665 16345079
    1075 2fjc:F (2.5) BS01 FE ? GO:0008199 ... P16665 16345079
    1076 2fjc:F (2.5) BS02 FE ? GO:0008199 ... P16665 16345079
    1077 2fjc:G (2.5) BS01 FE ? GO:0008199 ... P16665 16345079
    1078 2fjc:G (2.5) BS02 FE ? GO:0008199 ... P16665 16345079
    1079 2fjc:H (2.5) BS01 FE ? GO:0008199 ... P16665 16345079
    1080 2fjc:H (2.5) BS02 FE ? GO:0008199 ... P16665 16345079
    1081 2fjc:I (2.5) BS01 FE ? GO:0008199 ... P16665 16345079
    1082 2fjc:I (2.5) BS02 FE ? GO:0008199 ... P16665 16345079
    1083 2fjc:J (2.5) BS01 FE ? GO:0008199 ... P16665 16345079
    1084 2fjc:J (2.5) BS02 FE ? GO:0008199 ... P16665 16345079
    1085 2fjc:K (2.5) BS01 FE ? GO:0008199 ... P16665 16345079
    1086 2fjc:K (2.5) BS02 FE ? GO:0008199 ... P16665 16345079
    1087 2fjc:L (2.5) BS01 FE ? GO:0008199 ... P16665 16345079
    1088 2fjc:L (2.5) BS02 FE ? GO:0008199 ... P16665 16345079
    1089 2fjc:M (2.5) BS01 FE ? GO:0008199 ... P16665 16345079
    1090 2fjc:M (2.5) BS02 FE ? GO:0008199 ... P16665 16345079
    1091 2fjc:N (2.5) BS01 FE ? GO:0008199 ... P16665 16345079
    1092 2fjc:N (2.5) BS02 FE ? GO:0008199 ... P16665 16345079
    1093 2fjc:O (2.5) BS01 FE ? GO:0008199 ... P16665 16345079
    1094 2fjc:P (2.5) BS01 FE ? GO:0008199 ... P16665 16345079
    1095 2g93:A (1.9) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1096 2gbw:A (1.7) BS01 FE ? GO:0005506 ... A2TC87 17349044
    1097 2gbw:C (1.7) BS01 FE ? GO:0005506 ... A2TC87 17349044
    1098 2gbw:E (1.7) BS02 FE ? GO:0005506 ... A2TC87 17349044
    1099 2gbx:A (2.8) BS01 FE ? GO:0005506 ... A2TC87 17349044
    1100 2gbx:C (2.8) BS01 FE ? GO:0005506 ... A2TC87 17349044
    1101 2gbx:E (2.8) BS01 FE ? GO:0005506 ... A2TC87 17349044
    1102 2gh2:A (1.5) BS02 FE 1.13.11.20 GO:0005506 ... P21816 16611640
    1103 2gok:A (1.87) BS01 FE 3.5.2.7 GO:0005506 ... Q8U8Z6 17640072
    1104 2gok:B (1.87) BS01 FE 3.5.2.7 GO:0005506 ... Q8U8Z6 17640072
    1105 2gyq:A (1.4) BS01 FE ? GO:0046872 ... Q6N4M9 N/A
    1106 2gyq:A (1.4) BS02 FE ? GO:0046872 ... Q6N4M9 N/A
    1107 2gyq:B (1.4) BS01 FE ? GO:0046872 ... Q6N4M9 N/A
    1108 2gyq:B (1.4) BS02 FE ? GO:0046872 ... Q6N4M9 N/A
    1109 2gyq:B (1.4) BS03 FE ? GO:0046872 ... Q6N4M9 N/A
    1110 2h0v:A (2.6) BS01 FE 1.13.11.24 GO:0008127 ... P42106 N/A
    1111 2h0v:A (2.6) BS02 FE 1.13.11.24 GO:0008127 ... P42106 N/A
    1112 2h0v:B (2.6) BS01 FE 1.13.11.24 GO:0008127 ... P42106 N/A
    1113 2h0v:B (2.6) BS02 FE 1.13.11.24 GO:0008127 ... P42106 N/A
    1114 2h4i:A (2.55) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1115 2hca:A (2.8) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1116 2hg3:L (2.7) BS05 FE ? GO:0009772 ... P0C0Y8 17315985
    1117 2hg3:M (2.7) BS03 FE ? GO:0009772 ... P0C0Y9 17315985
    1118 2hg9:L (2.45) BS05 FE ? GO:0009772 ... P0C0Y8 17315985
    1119 2hg9:M (2.45) BS03 FE ? GO:0009772 ... P0C0Y9 17315985
    1120 2hh1:L (2.55) BS06 FE ? GO:0009772 ... P0C0Y8 17315985
    1121 2hh1:M (2.55) BS04 FE ? GO:0009772 ... P0C0Y9 17315985
    1122 2hhk:L (2.5) BS05 FE ? GO:0009772 ... P0C0Y8 17315985
    1123 2hhk:M (2.5) BS03 FE ? GO:0009772 ... P0C0Y9 17315985
    1124 2hit:L (2.75) BS05 FE ? GO:0009772 ... P0C0Y8 17315985
    1125 2hit:M (2.75) BS03 FE ? GO:0009772 ... P0C0Y9 17315985
    1126 2hj6:L (3.0) BS05 FE ? GO:0009772 ... P0C0Y8 17315985
    1127 2hj6:M (3.0) BS03 FE ? GO:0009772 ... P0C0Y9 17315985
    1128 2hk6:A (1.71) BS01 FE 4.99.1.9 GO:0004325 ... P32396 17198378
    1129 2hk6:A (1.71) BS02 FE 4.99.1.9 GO:0004325 ... P32396 17198378
    1130 2hk6:A (1.71) BS03 FE 4.99.1.9 GO:0004325 ... P32396 17198378
    1131 2hmj:A (1.5) BS01 FE 1.14.12.12 GO:0005506 ... P0A111 16980501
    1132 2hmk:A (1.65) BS01 FE 1.14.12.12 GO:0005506 ... P0A111 16980501
    1133 2hml:A (1.8) BS01 FE 1.14.12.12 GO:0005506 ... P0A111 16980501
    1134 2hmm:A (1.6) BS01 FE 1.14.12.12 GO:0005506 ... P0A111 16980501
    1135 2hmn:A (1.7) BS01 FE 1.14.12.12 GO:0005506 ... P0A111 16980501
    1136 2hmo:A (1.6) BS01 FE 1.14.12.12 GO:0005506 ... P0A111 16980501
    1137 2hr5:A (2.7) BS01 FE ? GO:0005506 ... Q9UWP7 N/A
    1138 2hr5:A (2.7) BS02 FE ? GO:0005506 ... Q9UWP7 N/A
    1139 2hr5:A (2.7) BS03 FE ? GO:0005506 ... Q9UWP7 N/A
    1140 2hr5:B (2.7) BS01 FE ? GO:0005506 ... Q9UWP7 N/A
    1141 2hr5:B (2.7) BS02 FE ? GO:0005506 ... Q9UWP7 N/A
    1142 2hr5:B (2.7) BS03 FE ? GO:0005506 ... Q9UWP7 N/A
    1143 2htn:A (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P0ABD3 17077480
    1144 2htn:A (2.5) BS02 FE 1.16.3.1 GO:0004322 ... P0ABD3 17077480
    1145 2htn:B (2.5) BS02 FE 1.16.3.1 GO:0004322 ... P0ABD3 17077480
    1146 2htn:B (2.5) BS03 FE 1.16.3.1 GO:0004322 ... P0ABD3 17077480
    1147 2htn:C (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P0ABD3 17077480
    1148 2htn:C (2.5) BS02 FE 1.16.3.1 GO:0004322 ... P0ABD3 17077480
    1149 2htn:D (2.5) BS02 FE 1.16.3.1 GO:0004322 ... P0ABD3 17077480
    1150 2htn:D (2.5) BS03 FE 1.16.3.1 GO:0004322 ... P0ABD3 17077480
    1151 2htn:E (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P0ABD3 17077480
    1152 2htn:E (2.5) BS02 FE 1.16.3.1 GO:0004322 ... P0ABD3 17077480
    1153 2htn:F (2.5) BS02 FE 1.16.3.1 GO:0004322 ... P0ABD3 17077480
    1154 2htn:F (2.5) BS03 FE 1.16.3.1 GO:0004322 ... P0ABD3 17077480
    1155 2htn:G (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P0ABD3 17077480
    1156 2htn:G (2.5) BS02 FE 1.16.3.1 GO:0004322 ... P0ABD3 17077480
    1157 2htn:H (2.5) BS02 FE 1.16.3.1 GO:0004322 ... P0ABD3 17077480
    1158 2htn:H (2.5) BS03 FE 1.16.3.1 GO:0004322 ... P0ABD3 17077480
    1159 2huo:A (2.0) BS01 FE 1.13.99.1 GO:0004033 ... Q9QXN5 17012379
    1160 2huo:A (2.0) BS02 FE 1.13.99.1 GO:0004033 ... Q9QXN5 17012379
    1161 2hvb:A (2.5) BS01 FE 1.15.1.2 GO:0005506 ... O58810 N/A
    1162 2hvb:B (2.5) BS01 FE 1.15.1.2 GO:0005506 ... O58810 N/A
    1163 2hvb:C (2.5) BS01 FE 1.15.1.2 GO:0005506 ... O58810 N/A
    1164 2hvb:D (2.5) BS01 FE 1.15.1.2 GO:0005506 ... O58810 N/A
    1165 2hy1:A (1.932) BS01 FE 3.1.4.16
    3.1.4.17
    GO:0004112 ... P9WP65 17059828
    1166 2hyo:A (2.25) BS01 FE 3.1.4.16
    3.1.4.17
    GO:0004112 ... P9WP65 17059828
    1167 2hyp:A (2.05) BS01 FE 3.1.4.16
    3.1.4.17
    GO:0004112 ... P9WP65 17059828
    1168 2i9u:A (2.05) BS01 FE 3.5.4.3 GO:0005829 ... Q97MB6 N/A
    1169 2i9u:B (2.05) BS01 FE 3.5.4.3 GO:0005829 ... Q97MB6 N/A
    1170 2ibn:A (1.5) BS01 FE 1.13.99.1 GO:0005506 ... Q9UGB7 18364358
    1171 2ibn:A (1.5) BS02 FE 1.13.99.1 GO:0005506 ... Q9UGB7 18364358
    1172 2ibn:B (1.5) BS01 FE 1.13.99.1 GO:0005506 ... Q9UGB7 18364358
    1173 2ibn:B (1.5) BS02 FE 1.13.99.1 GO:0005506 ... Q9UGB7 18364358
    1174 2inc:A (1.85) BS01 FE ? GO:0004497 ... O87798 17117860
    1175 2inc:A (1.85) BS02 FE ? GO:0004497 ... O87798 17117860
    1176 2inn:A (2.7) BS01 FE ? GO:0016491 ... Q84AQ2 17176061
    1177 2inn:A (2.7) BS02 FE ? GO:0016491 ... Q84AQ2 17176061
    1178 2inn:B (2.7) BS01 FE ? GO:0016491 ... Q84AQ2 17176061
    1179 2inn:B (2.7) BS02 FE ? GO:0016491 ... Q84AQ2 17176061
    1180 2inp:A (2.3) BS01 FE ? GO:0016491 ... Q84AQ2 17176061
    1181 2inp:A (2.3) BS03 FE ? GO:0016491 ... Q84AQ2 17176061
    1182 2inp:B (2.3) BS01 FE ? GO:0016491 ... Q84AQ2 17176061
    1183 2inp:B (2.3) BS02 FE ? GO:0016491 ... Q84AQ2 17176061
    1184 2itb:A (2.05) BS01 FE 1.14.99.69 GO:0004497 ... Q88KV1 N/A
    1185 2itb:A (2.05) BS02 FE 1.14.99.69 GO:0004497 ... Q88KV1 N/A
    1186 2itb:B (2.05) BS01 FE 1.14.99.69 GO:0004497 ... Q88KV1 N/A
    1187 2itb:B (2.05) BS02 FE 1.14.99.69 GO:0004497 ... Q88KV1 N/A
    1188 2iuj:A (2.4) BS01 FE 1.13.11.- GO:0005737 ... Q43446 17022084
    1189 2iuk:A (2.4) BS01 FE 1.13.11.58 GO:0005506 ... P24095 17022084
    1190 2iuk:B (2.4) BS01 FE 1.13.11.58 GO:0005506 ... P24095 17022084
    1191 2iuw:A (1.5) BS01 FE 1.14.11.33
    1.14.11.54
    GO:0006281 ... Q96Q83 16858410
    1192 2iuw:A (1.5) BS02 FE 1.14.11.33
    1.14.11.54
    GO:0006281 ... Q96Q83 16858410
    1193 2iuw:A (1.5) BS03 FE 1.14.11.33
    1.14.11.54
    GO:0006281 ... Q96Q83 16858410
    1194 2iw4:A (2.15) BS01 FE 3.6.1.1 GO:0004427 ... P37487 17095506
    1195 2iw4:A (2.15) BS02 FE 3.6.1.1 GO:0004427 ... P37487 17095506
    1196 2iw4:B (2.15) BS01 FE 3.6.1.1 GO:0004427 ... P37487 17095506
    1197 2iw4:B (2.15) BS02 FE 3.6.1.1 GO:0004427 ... P37487 17095506
    1198 2iy4:B (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    1199 2iy4:B (2.31) BS02 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524
    1200 2iy4:C (2.31) BS01 FE 1.16.-.- GO:0005737 ... Q8Y8G1 17186524

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218