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BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 1xu5:B (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    802 1xvb:A (1.8) BS01 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    803 1xvb:A (1.8) BS02 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    804 1xvb:B (1.8) BS01 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    805 1xvb:B (1.8) BS02 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    806 1xvc:A (2.0) BS01 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    807 1xvc:A (2.0) BS02 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    808 1xvc:B (2.0) BS01 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    809 1xvc:B (2.0) BS02 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    810 1xvd:A (2.3) BS01 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    811 1xvd:A (2.3) BS02 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    812 1xvd:B (2.3) BS01 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    813 1xvd:B (2.3) BS02 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    814 1xve:A (2.4) BS01 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    815 1xve:A (2.4) BS02 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    816 1xve:B (2.4) BS01 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    817 1xve:B (2.4) BS02 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    818 1xvf:A (2.0) BS01 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    819 1xvf:A (2.0) BS02 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    820 1xvf:B (2.0) BS01 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    821 1xvf:B (2.0) BS02 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    822 1xvg:A (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    823 1xvg:A (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    824 1xvg:B (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    825 1xvg:B (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 15839679
    826 1xvx:A (1.53) BS01 FE ? GO:0006826 ... A1JLH5 15576371
    827 1xzw:A (2.5) BS01 FE 3.1.3.2 GO:0003993 ... Q9SE00 15625111
    828 1xzw:B (2.5) BS01 FE 3.1.3.2 GO:0003993 ... Q9SE00 15625111
    829 1y07:A (1.55) BS01 FE 1.15.1.2 GO:0005506 ... O83795 16791639
    830 1y07:B (1.55) BS01 FE 1.15.1.2 GO:0005506 ... O83795 16791639
    831 1y07:C (1.55) BS01 FE 1.15.1.2 GO:0005506 ... O83795 16791639
    832 1y07:D (1.55) BS01 FE 1.15.1.2 GO:0005506 ... O83795 16791639
    833 1y3t:A (2.4) BS01 FE 1.13.11.24 GO:0008127 ... P42106 15628860
    834 1y3t:A (2.4) BS02 FE 1.13.11.24 GO:0008127 ... P42106 15628860
    835 1y3t:B (2.4) BS01 FE 1.13.11.24 GO:0008127 ... P42106 15628860
    836 1y3t:B (2.4) BS02 FE 1.13.11.24 GO:0008127 ... P42106 15628860
    837 1y4t:A (1.8) BS01 FE ? GO:0030288 ... Q0PBW4 15613474
    838 1y4t:D (1.8) BS01 FE ? GO:0030288 ... Q0PBW4 15613474
    839 1y56:A (2.86) BS01 FE 1.5.99.8 GO:0005524 ... O59088 16027125
    840 1y67:A (1.853) BS01 FE 1.15.1.1 GO:0004784 ... Q9RUV2 N/A
    841 1y67:B (1.853) BS01 FE 1.15.1.1 GO:0004784 ... Q9RUV2 N/A
    842 1y67:C (1.853) BS01 FE 1.15.1.1 GO:0004784 ... Q9RUV2 N/A
    843 1y67:D (1.853) BS01 FE 1.15.1.1 GO:0004784 ... Q9RUV2 N/A
    844 1yfu:A (1.9) BS01 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    845 1yfu:A (1.9) BS02 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    846 1yfw:A (2.0) BS01 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    847 1yfw:A (2.0) BS02 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    848 1yfx:A (2.0) BS01 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    849 1yfx:A (2.0) BS02 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    850 1yfy:A (3.2) BS01 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    851 1yfy:A (3.2) BS02 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    852 1yge:A (1.4) BS01 FE 1.13.11.12 GO:0005506 ... P08170 8718858
    853 1yk4:A (0.69) BS01 FE ? GO:0005506 ... Q9V099 15983423
    854 1yk5:A (1.79) BS01 FE ? GO:0005506 ... Q9V099 15983423
    855 1yk5:B (1.79) BS01 FE ? GO:0005506 ... Q9V099 15983423
    856 1yk5:C (1.79) BS01 FE ? GO:0005506 ... Q9V099 15983423
    857 1yk5:D (1.79) BS01 FE ? GO:0005506 ... Q9V099 15983423
    858 1ykk:B (2.06) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    859 1ykk:D (2.06) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    860 1ykk:F (2.06) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    861 1ykk:H (2.06) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    862 1ykk:J (2.06) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    863 1ykk:L (2.06) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    864 1ykl:B (2.25) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    865 1ykl:D (2.25) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    866 1ykl:F (2.25) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    867 1ykl:H (2.25) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    868 1ykl:J (2.25) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    869 1ykl:L (2.25) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    870 1ykm:B (2.22) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    871 1ykm:D (2.22) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    872 1ykm:F (2.22) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    873 1ykm:H (2.22) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    874 1ykm:J (2.22) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    875 1ykm:L (2.22) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    876 1ykn:B (2.06) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    877 1ykn:D (2.06) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    878 1ykn:F (2.06) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    879 1ykn:H (2.06) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    880 1ykn:J (2.06) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    881 1ykn:L (2.06) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    882 1yko:B (2.54) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    883 1yko:D (2.54) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    884 1yko:F (2.54) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    885 1yko:H (2.54) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    886 1yko:J (2.54) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    887 1yko:L (2.54) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    888 1ykp:B (2.41) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    889 1ykp:D (2.41) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    890 1ykp:F (2.41) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    891 1ykp:H (2.41) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    892 1ykp:J (2.41) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    893 1ykp:L (2.41) BS01 FE 1.13.11.3 GO:0003824 ... P00437 16101286
    894 1yux:A (1.6) BS01 FE ? GO:0005506 ... P30820 15895271
    895 1yux:A (1.6) BS03 FE ? GO:0005506 ... P30820 15895271
    896 1yux:B (1.6) BS01 FE ? GO:0005506 ... P30820 15895271
    897 1yux:B (1.6) BS03 FE ? GO:0005506 ... P30820 15895271
    898 1yuz:A (1.4) BS01 FE ? GO:0005506 ... P30820 15895271
    899 1yuz:A (1.4) BS03 FE ? GO:0005506 ... P30820 15895271
    900 1yuz:B (1.4) BS01 FE ? GO:0005506 ... P30820 15895271
    901 1yuz:B (1.4) BS03 FE ? GO:0005506 ... P30820 15895271
    902 1z01:A (1.8) BS01 FE 1.14.13.61 GO:0004497 ... O05935 15893671
    903 1z01:B (1.8) BS01 FE 1.14.13.61 GO:0004497 ... O05935 15893671
    904 1z01:C (1.8) BS01 FE 1.14.13.61 GO:0004497 ... O05935 15893671
    905 1z01:D (1.8) BS01 FE 1.14.13.61 GO:0004497 ... O05935 15893671
    906 1z01:E (1.8) BS01 FE 1.14.13.61 GO:0004497 ... O05935 15893671
    907 1z01:F (1.8) BS01 FE 1.14.13.61 GO:0004497 ... O05935 15893671
    908 1z02:A (1.8) BS01 FE 1.14.13.61 GO:0004497 ... O05935 15893671
    909 1z02:B (1.8) BS01 FE 1.14.13.61 GO:0004497 ... O05935 15893671
    910 1z02:C (1.8) BS01 FE 1.14.13.61 GO:0004497 ... O05935 15893671
    911 1z02:D (1.8) BS01 FE 1.14.13.61 GO:0004497 ... O05935 15893671
    912 1z02:E (1.8) BS01 FE 1.14.13.61 GO:0004497 ... O05935 15893671
    913 1z02:F (1.8) BS01 FE 1.14.13.61 GO:0004497 ... O05935 15893671
    914 1z03:A (1.8) BS01 FE 1.14.13.61 GO:0004497 ... O05935 15893671
    915 1z03:B (1.8) BS01 FE 1.14.13.61 GO:0004497 ... O05935 15893671
    916 1z03:C (1.8) BS01 FE 1.14.13.61 GO:0004497 ... O05935 15893671
    917 1z03:D (1.8) BS01 FE 1.14.13.61 GO:0004497 ... O05935 15893671
    918 1z03:E (1.8) BS01 FE 1.14.13.61 GO:0004497 ... O05935 15893671
    919 1z03:F (1.8) BS01 FE 1.14.13.61 GO:0004497 ... O05935 15893671
    920 1z6o:M (1.91) BS01 FE 1.16.3.1 GO:0004322 ... A0A7E5WTY7 15896348
    921 1z6o:N (1.91) BS01 FE 1.16.3.1 GO:0004322 ... A0A7E5WTY7 15896348
    922 1z6o:O (1.91) BS01 FE 1.16.3.1 GO:0004322 ... A0A7E5WTY7 15896348
    923 1z6o:P (1.91) BS01 FE 1.16.3.1 GO:0004322 ... A0A7E5WTY7 15896348
    924 1z6o:Q (1.91) BS01 FE 1.16.3.1 GO:0004322 ... A0A7E5WTY7 15896348
    925 1z6o:R (1.91) BS01 FE 1.16.3.1 GO:0004322 ... A0A7E5WTY7 15896348
    926 1z6o:S (1.91) BS01 FE 1.16.3.1 GO:0004322 ... A0A7E5WTY7 15896348
    927 1z6o:T (1.91) BS01 FE 1.16.3.1 GO:0004322 ... A0A7E5WTY7 15896348
    928 1z6o:U (1.91) BS01 FE 1.16.3.1 GO:0004322 ... A0A7E5WTY7 15896348
    929 1z6o:V (1.91) BS01 FE 1.16.3.1 GO:0004322 ... A0A7E5WTY7 15896348
    930 1z6o:W (1.91) BS01 FE 1.16.3.1 GO:0004322 ... A0A7E5WTY7 15896348
    931 1z6o:X (1.91) BS01 FE 1.16.3.1 GO:0004322 ... A0A7E5WTY7 15896348
    932 1z9j:A (4.5) BS05 FE ? GO:0009772 ... P0C0Y8 15895982
    933 1z9j:B (4.5) BS03 FE ? GO:0009772 ... P0C0Y9 15895982
    934 1z9k:A (4.6) BS05 FE ? GO:0009772 ... P0C0Y8 15895982
    935 1z9k:B (4.6) BS02 FE ? GO:0009772 ... P0C0Y9 15895982
    936 1za5:A (1.8) BS01 FE 1.15.1.1 GO:0000303 ... P0AGD3 16430211
    937 1za5:B (1.8) BS01 FE 1.15.1.1 GO:0000303 ... P0AGD3 16430211
    938 2ahj:A (1.7) BS01 FE 4.2.1.84 GO:0003824 ... P13448 9586994
    939 2ahj:C (1.7) BS01 FE 4.2.1.84 GO:0003824 ... P13448 9586994
    940 2alu:A (2.09) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    941 2amu:A (2.0) BS01 FE 1.15.1.2 GO:0005506 ... Q9WZC6 N/A
    942 2ani:A (2.0) BS01 FE 1.17.4.1 GO:0004748 ... O84835 17827077
    943 2ani:A (2.0) BS02 FE 1.17.4.1 GO:0004748 ... O84835 17827077
    944 2ays:A (1.86) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    945 2azq:A (2.65) BS01 FE 1.13.11.1 GO:0003824 ... Q51433 16171781
    946 2b1x:A (2.0) BS01 FE 1.14.12.12 GO:0005506 ... Q9X3R9 16237006
    947 2b1x:C (2.0) BS01 FE 1.14.12.12 GO:0005506 ... Q9X3R9 16237006
    948 2b1x:E (2.0) BS01 FE 1.14.12.12 GO:0005506 ... Q9X3R9 16237006
    949 2b24:A (3.0) BS01 FE 1.14.12.12 GO:0005506 ... Q9X3R9 16237006
    950 2b24:C (3.0) BS01 FE 1.14.12.12 GO:0005506 ... Q9X3R9 16237006
    951 2b24:E (3.0) BS01 FE 1.14.12.12 GO:0005506 ... Q9X3R9 16237006
    952 2b5h:A (1.5) BS01 FE 1.13.11.20 GO:0005506 ... P21816 16611640
    953 2b65:A (1.5) BS04 FE 3.4.21.- GO:0005576 ... P24627 N/A
    954 2bi4:A (2.85) BS01 FE 1.1.1.77 GO:0000166 ... P0A9S1 15995211
    955 2bi4:B (2.85) BS01 FE 1.1.1.77 GO:0000166 ... P0A9S1 15995211
    956 2biw:A (2.39) BS02 FE 1.13.11.75 GO:0010436 ... P74334 15821095
    957 2biw:B (2.39) BS02 FE 1.13.11.75 GO:0010436 ... P74334 15821095
    958 2biw:C (2.39) BS02 FE 1.13.11.75 GO:0010436 ... P74334 15821095
    959 2biw:D (2.39) BS02 FE 1.13.11.75 GO:0010436 ... P74334 15821095
    960 2bjj:X (2.4) BS01 FE 3.4.21.- GO:0001503 ... P02788 16201406
    961 2bjj:X (2.4) BS02 FE 3.4.21.- GO:0001503 ... P02788 16201406
    962 2bjs:A (1.3) BS01 FE 1.21.3.1 GO:0005506 ... P05326 28703303
    963 2bmo:A (1.2) BS02 FE ? GO:0005506 ... Q8RTL4 15854650
    964 2bmq:A (1.55) BS02 FE ? GO:0005506 ... Q8RTL4 15854650
    965 2bmr:A (1.5) BS02 FE ? GO:0005506 ... Q8RTL4 15854650
    966 2boy:A (1.9) BS01 FE 1.13.11.1 GO:0003824 ... Q8G9L3 16793061
    967 2boy:B (1.9) BS01 FE 1.13.11.1 GO:0003824 ... Q8G9L3 16793061
    968 2boy:C (1.9) BS01 FE 1.13.11.1 GO:0003824 ... Q8G9L3 16793061
    969 2boy:D (1.9) BS01 FE 1.13.11.1 GO:0003824 ... Q8G9L3 16793061
    970 2boy:E (1.9) BS01 FE 1.13.11.1 GO:0003824 ... Q8G9L3 16793061
    971 2boy:F (1.9) BS01 FE 1.13.11.1 GO:0003824 ... Q8G9L3 16793061
    972 2boy:G (1.9) BS01 FE 1.13.11.1 GO:0003824 ... Q8G9L3 16793061
    973 2boy:H (1.9) BS01 FE 1.13.11.1 GO:0003824 ... Q8G9L3 16793061
    974 2boz:L (2.4) BS06 FE ? GO:0009772 ... P0C0Y8 15908429
    975 2boz:M (2.4) BS05 FE ? GO:0009772 ... P0C0Y9 15908429
    976 2bpi:A (2.52) BS01 FE 1.15.1.1 GO:0004784 ... Q8IAY6 17020617
    977 2bpi:B (2.52) BS01 FE 1.15.1.1 GO:0004784 ... Q8IAY6 17020617
    978 2bq1:I (3.99) BS01 FE 1.17.4.1 GO:0004748 ... P17424 16631785
    979 2bq1:I (3.99) BS02 FE 1.17.4.1 GO:0004748 ... P17424 16631785
    980 2bq1:J (3.99) BS01 FE 1.17.4.1 GO:0004748 ... P17424 16631785
    981 2bq1:J (3.99) BS02 FE 1.17.4.1 GO:0004748 ... P17424 16631785
    982 2bu9:A (1.3) BS01 FE 1.21.3.1 GO:0005506 ... P05326 16143309
    983 2bum:B (1.8) BS01 FE 1.13.11.3 GO:0003824 ... P20372 15487948
    984 2buq:B (1.8) BS01 FE 1.13.11.3 GO:0003824 ... P20372 15487948
    985 2bur:B (1.8) BS01 FE 1.13.11.3 GO:0003824 ... P20372 15487948
    986 2but:B (1.85) BS01 FE 1.13.11.3 GO:0003824 ... P20372 15487948
    987 2buu:B (1.8) BS01 FE 1.13.11.3 GO:0003824 ... P20372 N/A
    988 2buv:B (1.8) BS01 FE 1.13.11.3 GO:0003824 ... P20372 15487948
    989 2buw:B (1.8) BS01 FE 1.13.11.3 GO:0003824 ... P20372 N/A
    990 2bux:B (1.8) BS01 FE 1.13.11.3 GO:0003824 ... P20372 N/A
    991 2buy:B (1.8) BS01 FE 1.13.11.3 GO:0003824 ... P20372 N/A
    992 2buz:B (1.8) BS01 FE 1.13.11.3 GO:0003824 ... P20372 N/A
    993 2bv0:B (1.8) BS01 FE 1.13.11.3 GO:0003824 ... P20372 N/A
    994 2bw1:A (1.81) BS01 FE 1.16.-.- GO:0005737 ... P0CB53 16997323
    995 2bw1:B (1.81) BS01 FE 1.16.-.- GO:0005737 ... P0CB53 16997323
    996 2bw1:C (1.81) BS01 FE 1.16.-.- GO:0005737 ... P0CB53 16997323
    997 2bw1:D (1.81) BS01 FE 1.16.-.- GO:0005737 ... P0CB53 16997323
    998 2bw1:E (1.81) BS01 FE 1.16.-.- GO:0005737 ... P0CB53 16997323
    999 2bw1:F (1.81) BS01 FE 1.16.-.- GO:0005737 ... P0CB53 16997323
    1000 2bw1:G (1.81) BS01 FE 1.16.-.- GO:0005737 ... P0CB53 16997323
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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