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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7201 8qxl:B (2.82) BS04 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7202 8qxl:C (2.82) BS04 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7203 8qxl:D (2.82) BS06 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7204 8qxm:A (2.94) BS01 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7205 8qxm:B (2.94) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7206 8qxm:C (2.94) BS04 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7207 8qxm:D (2.94) BS05 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7208 8qxn:A (2.98) BS02 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7209 8qxn:B (2.98) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7210 8qxn:C (2.98) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7211 8qxn:D (2.98) BS05 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7212 8qxo:A (3.43) BS02 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7213 8qxo:B (3.43) BS04 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7214 8qxo:C (3.43) BS01 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7215 8qxo:D (3.43) BS05 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7216 8r5o:I (2.49) BS01 FE N/A GO:0004784 ... N/A 38428394
    7217 8r5o:N (2.49) BS01 FE N/A GO:0004784 ... N/A 38428394
    7218 8r6s:I (2.49) BS01 FE N/A GO:0004784 ... N/A 38428394
    7219 8r6s:N (2.49) BS01 FE N/A GO:0004784 ... N/A 38428394
    7220 8ras:I (2.62) BS01 FE N/A GO:0004784 ... N/A 38428394
    7221 8ras:N (2.62) BS01 FE N/A GO:0004784 ... N/A 38428394
    7222 8rdj:I (2.62) BS01 FE N/A GO:0004784 ... N/A 38428394
    7223 8rdj:N (2.62) BS01 FE N/A GO:0004784 ... N/A 38428394
    7224 8rk1:A (2.095) BS01 FE ? GO:0006826 ... Q7V0T9 38489389
    7225 8rxn:A (1.0) BS01 FE ? GO:0005506 ... P00269 1616692
    7226 8sbb:A (3.59) BS01 FE ? GO:0004497 ... A0A1I2KHB9 37069165
    7227 8sbb:A (3.59) BS02 FE ? GO:0004497 ... A0A1I2KHB9 37069165
    7228 8sf2:D (1.5) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    7229 8sf9:D (1.8) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    7230 8sfa:D (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    7231 8sfa:S (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    7232 8sfa:b (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    7233 8sfa:t (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    7234 8sfb:D (1.4) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    7235 8sfc:D (1.4) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    7236 8sfd:D (1.5) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    7237 8sfk:D (1.4) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    7238 8sfm:D (1.5) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    7239 8sm6:A (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    7240 8sm6:A (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    7241 8sm6:B (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    7242 8sm6:B (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    7243 8sm6:C (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    7244 8sm6:C (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    7245 8sm6:D (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    7246 8sm6:D (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    7247 8sm7:A (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    7248 8sm7:A (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    7249 8sm7:B (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    7250 8sm7:B (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    7251 8sm7:D (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    7252 8sm7:D (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    7253 8sm7:G (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    7254 8sm7:G (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    7255 8sm8:A (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    7256 8sm8:A (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    7257 8sm8:D (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    7258 8sm8:D (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    7259 8sm8:G (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    7260 8sm8:G (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    7261 8sm8:J (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    7262 8sm8:J (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    7263 8sm9:B (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    7264 8sm9:B (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    7265 8sm9:D (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    7266 8sm9:D (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    7267 8sm9:F (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    7268 8sm9:F (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    7269 8sm9:H (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    7270 8sm9:H (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    7271 8so0:C (2.79961) BS01 FE 3.1.3.16 GO:0000159 ... P67775 38123684
    7272 8t1q:A (1.7) BS02 FE 3.1.27.- N/A Q9UKF6 37967558
    7273 8t1q:A (1.7) BS03 FE 3.1.27.- N/A Q9UKF6 37967558
    7274 8t1r:A (2.2) BS02 FE 3.1.27.- N/A Q9UKF6 37967558
    7275 8t1r:A (2.2) BS03 FE 3.1.27.- N/A Q9UKF6 37967558
    7276 8t4q:A (2.07) BS01 FE N/A N/A P09528 N/A
    7277 8t4q:B (2.07) BS01 FE N/A N/A P09528 N/A
    7278 8t4q:C (2.07) BS01 FE N/A N/A P09528 N/A
    7279 8t4q:D (2.07) BS01 FE N/A N/A P09528 N/A
    7280 8t4q:E (2.07) BS01 FE N/A N/A P09528 N/A
    7281 8t4q:F (2.07) BS01 FE N/A N/A P09528 N/A
    7282 8t4q:G (2.07) BS01 FE N/A N/A P09528 N/A
    7283 8t4q:H (2.07) BS01 FE N/A N/A P09528 N/A
    7284 8t4q:I (2.07) BS01 FE N/A N/A P09528 N/A
    7285 8t4q:J (2.07) BS01 FE N/A N/A P09528 N/A
    7286 8t4q:K (2.07) BS01 FE N/A N/A P09528 N/A
    7287 8t4q:L (2.07) BS01 FE N/A N/A P09528 N/A
    7288 8t4q:M (2.07) BS01 FE N/A N/A P09528 N/A
    7289 8t4q:N (2.07) BS01 FE N/A N/A P09528 N/A
    7290 8t4q:O (2.07) BS01 FE N/A N/A P09528 N/A
    7291 8t4q:P (2.07) BS01 FE N/A N/A P09528 N/A
    7292 8t4q:Q (2.07) BS01 FE N/A N/A P09528 N/A
    7293 8t4q:R (2.07) BS01 FE N/A N/A P09528 N/A
    7294 8t4q:S (2.07) BS01 FE N/A N/A P09528 N/A
    7295 8t4q:T (2.07) BS01 FE N/A N/A P09528 N/A
    7296 8t4q:U (2.07) BS01 FE N/A N/A P09528 N/A
    7297 8t4q:V (2.07) BS01 FE N/A N/A P09528 N/A
    7298 8t4q:W (2.07) BS01 FE N/A N/A P09528 N/A
    7299 8t4q:X (2.07) BS01 FE N/A N/A P09528 N/A
    7300 8t7m:A (1.82) BS01 FE N/A N/A Q73MJ7 N/A
    7301 8t7m:B (1.82) BS01 FE N/A N/A Q73MJ7 N/A
    7302 8tdv:A (3.44) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37930833
    7303 8tdv:B (3.44) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37930833
    7304 8tdw:A (3.04) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37930833
    7305 8tdw:B (3.04) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37930833
    7306 8ttb:C (2.77) BS01 FE 3.1.3.16 GO:0000159 ... P67775 38123684
    7307 8twi:C (2.69) BS02 FE 3.1.3.16 GO:0000159 ... P67775 38123684
    7308 8twt:A (2.3) BS02 FE N/A N/A A0A861B387 N/A
    7309 8twt:B (2.3) BS02 FE N/A N/A A0A861B387 N/A
    7310 8twt:B (2.3) BS03 FE N/A N/A A0A861B387 N/A
    7311 8tww:A (2.0) BS02 FE N/A N/A A0A861B387 N/A
    7312 8tww:A (2.0) BS03 FE N/A N/A A0A861B387 N/A
    7313 8tww:A (2.0) BS04 FE N/A N/A A0A861B387 N/A
    7314 8tww:B (2.0) BS02 FE N/A N/A A0A861B387 N/A
    7315 8tww:B (2.0) BS03 FE N/A N/A A0A861B387 N/A
    7316 8u41:A (2.72) BS01 FE N/A N/A A0A9X4Y9G9 39143299
    7317 8u41:B (2.72) BS01 FE N/A N/A A0A9X4Y9G9 39143299
    7318 8u42:A (2.0) BS01 FE N/A N/A A0A9X4Y9G9 39143299
    7319 8u42:B (2.0) BS01 FE N/A N/A A0A9X4Y9G9 39143299
    7320 8u5g:A (3.2) BS02 FE 3.1.3.16 GO:0016787 ... P62136 38042495
    7321 8u9j:A (2.02) BS01 FE N/A GO:0005506 ... Q96SZ5 38941563
    7322 8u9j:B (2.02) BS01 FE N/A GO:0005506 ... Q96SZ5 38941563
    7323 8uhw:B (3.28) BS01 FE N/A N/A A0A0H3W5U9 N/A
    7324 8uhw:C (3.28) BS01 FE N/A N/A A0A0H3W5U9 N/A
    7325 8uhw:D (3.28) BS01 FE N/A N/A A0A0H3W5U9 N/A
    7326 8uhw:E (3.28) BS01 FE N/A N/A A0A0H3W5U9 N/A
    7327 8uhw:F (3.28) BS01 FE N/A N/A A0A0H3W5U9 N/A
    7328 8ux5:A (3.06) BS01 FE N/A N/A A0A9X4Y9G9 39143299
    7329 8ux5:B (3.06) BS01 FE N/A N/A A0A9X4Y9G9 39143299
    7330 8vig:A (1.6) BS01 FE N/A N/A A0A978T1Y9 39216472
    7331 8vih:A (1.55) BS01 FE N/A N/A B1WTS6 39216472
    7332 8vih:B (1.55) BS01 FE N/A N/A B1WTS6 39216472
    7333 8vik:A (1.961) BS01 FE N/A N/A B1WTS6 39216472
    7334 8vik:B (1.961) BS01 FE N/A N/A B1WTS6 39216472
    7335 8vil:A (1.95) BS01 FE N/A N/A B1WTS6 39216472
    7336 8vil:B (1.95) BS01 FE N/A N/A B1WTS6 39216472
    7337 8vtj:L (2.81) BS04 FE ? GO:0009772 ... Q3J1A5 N/A
    7338 8vtj:M (2.81) BS04 FE ? GO:0009772 ... Q3J1A6 N/A
    7339 8vtl:L (3.05) BS04 FE ? GO:0009772 ... P0C0Y8 N/A
    7340 8vtl:M (3.05) BS04 FE ? GO:0009772 ... P0C0Y9 N/A
    7341 8vtm:L (3.51) BS03 FE ? GO:0009772 ... Q3J1A5 N/A
    7342 8vtm:M (3.51) BS03 FE ? GO:0009772 ... Q3J1A6 N/A
    7343 8vtn:L (3.57) BS03 FE ? GO:0009772 ... P0C0Y8 N/A
    7344 8vtn:M (3.57) BS03 FE ? GO:0009772 ... P0C0Y9 N/A
    7345 8vto:L (3.09) BS05 FE ? GO:0009772 ... P0C0Y8 N/A
    7346 8vto:M (3.09) BS05 FE ? GO:0009772 ... P0C0Y9 N/A
    7347 8w6m:A (2.501) BS01 FE N/A N/A A0A084EX36 38641862
    7348 8w6q:A (2.101) BS01 FE N/A N/A A0A084EX36 38641862
    7349 8w6q:A (2.101) BS02 FE N/A N/A A0A084EX36 38641862
    7350 8w6q:A (2.101) BS03 FE N/A N/A A0A084EX36 38641862
    7351 8w6q:A (2.101) BS04 FE N/A N/A A0A084EX36 38641862
    7352 8w6q:A (2.101) BS05 FE N/A N/A A0A084EX36 38641862
    7353 8w6q:A (2.101) BS06 FE N/A N/A A0A084EX36 38641862
    7354 8w6q:A (2.101) BS07 FE N/A N/A A0A084EX36 38641862
    7355 8w6q:A (2.101) BS08 FE N/A N/A A0A084EX36 38641862
    7356 8w6q:A (2.101) BS09 FE N/A N/A A0A084EX36 38641862
    7357 8w6s:A (2.099) BS01 FE N/A N/A A0A084EX36 38641862
    7358 8w6s:A (2.099) BS02 FE N/A N/A A0A084EX36 38641862
    7359 8w6s:A (2.099) BS03 FE N/A N/A A0A084EX36 38641862
    7360 8w6s:A (2.099) BS04 FE N/A N/A A0A084EX36 38641862
    7361 8w6s:A (2.099) BS05 FE N/A N/A A0A084EX36 38641862
    7362 8w6s:A (2.099) BS06 FE N/A N/A A0A084EX36 38641862
    7363 8w6u:A (2.099) BS01 FE N/A N/A A0A084EX36 38641862
    7364 8w6u:A (2.099) BS02 FE N/A N/A A0A084EX36 38641862
    7365 8w6u:A (2.099) BS03 FE N/A N/A A0A084EX36 38641862
    7366 8w6u:A (2.099) BS04 FE N/A N/A A0A084EX36 38641862
    7367 8w6u:A (2.099) BS05 FE N/A N/A A0A084EX36 38641862
    7368 8w6u:A (2.099) BS06 FE N/A N/A A0A084EX36 38641862
    7369 8w6u:A (2.099) BS07 FE N/A N/A A0A084EX36 38641862
    7370 8w6u:A (2.099) BS08 FE N/A N/A A0A084EX36 38641862
    7371 8w6y:A (2.502) BS01 FE N/A N/A A0A084EX36 38641862
    7372 8w6y:A (2.502) BS02 FE N/A N/A A0A084EX36 38641862
    7373 8w6y:A (2.502) BS03 FE N/A N/A A0A084EX36 38641862
    7374 8w73:A (2.601) BS01 FE N/A N/A A0A084EX36 38641862
    7375 8w73:A (2.601) BS02 FE N/A N/A A0A084EX36 38641862
    7376 8w73:A (2.601) BS03 FE N/A N/A A0A084EX36 38641862
    7377 8w74:A (2.5) BS01 FE N/A N/A A0A084EX36 38641862
    7378 8w74:A (2.5) BS02 FE N/A N/A A0A084EX36 38641862
    7379 8w74:A (2.5) BS03 FE N/A N/A A0A084EX36 38641862
    7380 8w74:A (2.5) BS04 FE N/A N/A A0A084EX36 38641862
    7381 8w79:A (2.697) BS01 FE N/A N/A A0A084EX36 38641862
    7382 8w79:A (2.697) BS02 FE N/A N/A A0A084EX36 38641862
    7383 8w79:A (2.697) BS03 FE N/A N/A A0A084EX36 38641862
    7384 8w7b:A (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    7385 8w7b:A (2.7) BS02 FE N/A N/A A0A084EX36 38641862
    7386 8w7b:A (2.7) BS03 FE N/A N/A A0A084EX36 38641862
    7387 8w7b:A (2.7) BS04 FE N/A N/A A0A084EX36 38641862
    7388 8w7b:A (2.7) BS05 FE N/A N/A A0A084EX36 38641862
    7389 8w7o:A (2.399) BS01 FE N/A N/A A0A084EX36 38641862
    7390 8w7o:A (2.399) BS02 FE N/A N/A A0A084EX36 38641862
    7391 8w7o:A (2.399) BS03 FE N/A N/A A0A084EX36 38641862
    7392 8w7o:A (2.399) BS04 FE N/A N/A A0A084EX36 38641862
    7393 8w7q:A (2.1) BS01 FE N/A N/A A0A084EX36 38641862
    7394 8w7t:A (2.499) BS01 FE N/A N/A A0A084EX36 38641862
    7395 8w7t:A (2.499) BS02 FE N/A N/A A0A084EX36 38641862
    7396 8w7u:A (2.502) BS01 FE N/A N/A A0A084EX36 38641862
    7397 8w7v:A (2.805) BS01 FE N/A N/A A0A084EX36 38641862
    7398 8w91:b (2.12) BS01 FE N/A N/A A0A173CSP7 N/A
    7399 8w91:b (2.12) BS02 FE N/A N/A A0A173CSP7 N/A
    7400 8w92:A (2.12) BS01 FE N/A N/A P02794 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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