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BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7001 8j9l:A (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7002 8j9l:B (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7003 8j9l:C (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7004 8j9l:D (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7005 8j9l:E (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7006 8j9l:F (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7007 8j9l:G (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7008 8j9l:H (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7009 8j9l:I (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7010 8j9l:J (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7011 8j9l:K (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7012 8j9l:L (2.5) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7013 8j9m:A (2.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7014 8j9m:A (2.9) BS02 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7015 8j9m:B (2.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7016 8j9m:B (2.9) BS02 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7017 8j9m:C (2.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7018 8j9m:C (2.9) BS02 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7019 8jai:A (2.56) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7020 8jai:B (2.56) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7021 8jai:B (2.56) BS02 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7022 8jai:D (2.56) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7023 8jai:E (2.56) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7024 8jai:E (2.56) BS02 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7025 8jai:F (2.56) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7026 8jai:G (2.56) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7027 8jai:H (2.56) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7028 8jai:I (2.56) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7029 8jai:L (2.56) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7030 8jai:M (2.56) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7031 8jai:P (2.56) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7032 8jai:P (2.56) BS02 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7033 8jai:Q (2.56) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7034 8jai:S (2.56) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7035 8jai:S (2.56) BS02 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7036 8jai:W (2.56) BS01 FE 1.16.3.1 GO:0004322 ... P02794 37870198
    7037 8jja:A (1.6) BS01 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    7038 8jja:A (1.6) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    7039 8jjk:A (1.7) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    7040 8jjk:A (1.7) BS03 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    7041 8jk5:A (1.7) BS01 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    7042 8jk5:A (1.7) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    7043 8jk8:A (1.95) BS01 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    7044 8jk8:A (1.95) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    7045 8jk9:A (1.6) BS01 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    7046 8jk9:A (1.6) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    7047 8jka:A (2.25) BS01 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    7048 8jka:A (2.25) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    7049 8jkp:A (2.1) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    7050 8jkp:A (2.1) BS03 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    7051 8jkr:A (2.0) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    7052 8jkr:A (2.0) BS03 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    7053 8k0e:A (3.65) BS01 FE N/A N/A Q32P28 39245686
    7054 8k0f:A (3.37) BS01 FE N/A N/A Q32P28 39245686
    7055 8k0m:A (3.17) BS01 FE N/A N/A Q32P28 39245686
    7056 8k17:A (3.18) BS01 FE N/A N/A Q32P28 39245686
    7057 8k20:A (3.7) BS01 FE 2.3.1.234 GO:0000408 ... O49653 38477398
    7058 8k5i:A (1.92) BS01 FE N/A N/A N/A 38013086
    7059 8k5j:A (1.3) BS01 FE N/A N/A N/A 38013086
    7060 8k5k:A (1.81) BS01 FE N/A N/A N/A 38013086
    7061 8k5o:L (2.42) BS06 FE ? GO:0015979 ... A0A0X8XAH6 38411333
    7062 8k5o:M (2.42) BS04 FE ? GO:0015979 ... A0A0X8X847 38411333
    7063 8k7n:A (2.0) BS01 FE N/A N/A A0A288TNX3 N/A
    7064 8kc9:A (3.75) BS01 FE N/A N/A Q32P28 39245686
    7065 8oei:A (1.65) BS01 FE ? GO:0006826 ... Q7V0T9 38489389
    7066 8oen:A () BS01 FE N/A N/A N/A N/A
    7067 8ogg:A (1.76) BS01 FE ? GO:0006826 ... Q7V0T9 38489389
    7068 8omy:X (1.37) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    7069 8omy:X (1.37) BS05 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    7070 8omy:X (1.37) BS06 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    7071 8on0:X (1.29) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    7072 8on0:X (1.29) BS05 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    7073 8on0:X (1.29) BS06 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    7074 8on1:X (1.37) BS03 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    7075 8on1:X (1.37) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    7076 8on1:X (1.37) BS05 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    7077 8on2:X (1.58) BS03 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    7078 8on2:X (1.58) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    7079 8on2:X (1.58) BS05 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    7080 8on2:X (1.58) BS06 FE 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    7081 8oz5:A (2.04) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7082 8oz5:A (2.04) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7083 8oz5:B (2.04) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7084 8oz5:B (2.04) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7085 8oz5:C (2.04) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7086 8oz5:C (2.04) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7087 8oz5:D (2.04) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7088 8oz5:D (2.04) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7089 8oz5:E (2.04) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7090 8oz5:E (2.04) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7091 8oz5:F (2.04) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7092 8oz5:F (2.04) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7093 8p02:A (2.3) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7094 8p02:A (2.3) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7095 8p02:B (2.3) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7096 8p02:B (2.3) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7097 8p02:C (2.3) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7098 8p02:C (2.3) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7099 8p02:D (2.3) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7100 8p02:D (2.3) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7101 8p02:E (2.3) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7102 8p02:E (2.3) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7103 8p02:F (2.3) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7104 8p02:F (2.3) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7105 8p46:A (1.77) BS01 FE 1.21.3.1 GO:0005737 ... P05326 N/A
    7106 8p47:A (1.56) BS02 FE 1.21.3.1 GO:0005737 ... P05326 N/A
    7107 8p48:A (1.63) BS02 FE 1.21.3.1 GO:0005737 ... P05326 N/A
    7108 8p7o:A (1.7) BS01 FE 1.21.3.1 GO:0005737 ... P05326 N/A
    7109 8p7p:A (1.8) BS02 FE 1.21.3.1 GO:0005737 ... P05326 N/A
    7110 8pkb:A (1.9) BS01 FE N/A GO:0003906 ... Q6GGE2 N/A
    7111 8pkb:A (1.9) BS02 FE N/A GO:0003906 ... Q6GGE2 N/A
    7112 8pmk:A (2.43) BS02 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7113 8pmk:A (2.43) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7114 8pmk:A (2.43) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7115 8pmk:B (2.43) BS02 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7116 8pmk:B (2.43) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7117 8pmk:B (2.43) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7118 8pmk:C (2.43) BS02 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7119 8pmk:C (2.43) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7120 8pmk:C (2.43) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7121 8pmk:D (2.43) BS02 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7122 8pmk:D (2.43) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7123 8pmk:D (2.43) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7124 8pmk:E (2.43) BS02 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7125 8pmk:E (2.43) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7126 8pmk:E (2.43) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7127 8pmk:F (2.43) BS02 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7128 8pmk:F (2.43) BS03 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7129 8pmk:F (2.43) BS04 FE N/A GO:0005737 ... A0A193DUB4 N/A
    7130 8pp2:A (2.001) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7131 8pp2:B (2.001) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7132 8pp2:C (2.001) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7133 8pp2:D (2.001) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7134 8pp2:E (2.001) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7135 8pp2:F (2.001) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7136 8pp2:G (2.001) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7137 8pp2:H (2.001) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7138 8pp2:I (2.001) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7139 8pp2:J (2.001) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7140 8pp2:K (2.001) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7141 8pp2:L (2.001) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7142 8pp3:A (1.55) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7143 8pp3:B (1.55) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7144 8pp3:C (1.55) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7145 8pp3:D (1.55) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7146 8pp3:E (1.55) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7147 8pp3:F (1.55) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7148 8pp3:G (1.55) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7149 8pp3:H (1.55) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7150 8pp3:I (1.55) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7151 8pp3:J (1.55) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7152 8pp3:K (1.55) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7153 8pp3:L (1.55) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7154 8pp4:A (1.999) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7155 8pp4:B (1.999) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7156 8pp4:C (1.999) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7157 8pp4:C (1.999) BS02 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7158 8pp4:D (1.999) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7159 8pp4:E (1.999) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7160 8pp4:F (1.999) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7161 8pp4:G (1.999) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7162 8pp4:H (1.999) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7163 8pp4:I (1.999) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7164 8pp4:J (1.999) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7165 8pp4:K (1.999) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7166 8pp4:L (1.999) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7167 8pp5:A (2.0) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7168 8pp5:B (2.0) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7169 8pp5:C (2.0) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7170 8pp5:D (2.0) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7171 8pp5:E (2.0) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7172 8pp5:F (2.0) BS01 FE 1.16.3.1 GO:0004322 ... P02794 38059469
    7173 8ptv:A (1.6) BS01 FE N/A GO:0005737 ... P05326 N/A
    7174 8py5:A (1.85) BS02 FE N/A N/A P05326 N/A
    7175 8py6:A (1.52) BS01 FE N/A N/A P05326 N/A
    7176 8py7:A (1.49) BS03 FE N/A N/A P05326 N/A
    7177 8py8:A (1.46) BS04 FE N/A N/A P05326 N/A
    7178 8py9:A (1.5) BS03 FE N/A N/A P05326 N/A
    7179 8pya:A (1.5) BS03 FE N/A N/A P05326 N/A
    7180 8q6d:A (1.4) BS02 FE N/A N/A Q9GZT9 N/A
    7181 8q6e:A (1.37) BS04 FE N/A N/A Q9GZT9 N/A
    7182 8qf6:A (2.2) BS02 FE N/A N/A G2LET6 N/A
    7183 8qf6:B (2.2) BS02 FE N/A N/A G2LET6 N/A
    7184 8qf6:C (2.2) BS02 FE N/A N/A G2LET6 N/A
    7185 8qf6:D (2.2) BS02 FE N/A N/A G2LET6 N/A
    7186 8qfl:A (1.75) BS01 FE ? GO:0005506 ... A0A840P3H4 38095354
    7187 8qfl:B (1.75) BS01 FE ? GO:0005506 ... A0A840P3H4 38095354
    7188 8qma:G (3.5) BS01 FE N/A GO:0004784 ... N/A 38428434
    7189 8qma:L (3.5) BS01 FE N/A GO:0004784 ... N/A 38428434
    7190 8qu9:A (2.88) BS02 FE 1.16.3.1 GO:0004322 ... P02794 38714719
    7191 8qu9:A (2.88) BS03 FE 1.16.3.1 GO:0004322 ... P02794 38714719
    7192 8qxj:A (2.65) BS02 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7193 8qxj:B (2.65) BS04 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7194 8qxj:C (2.65) BS04 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7195 8qxj:D (2.65) BS06 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7196 8qxk:A (2.66) BS02 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7197 8qxk:B (2.66) BS04 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7198 8qxk:C (2.66) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7199 8qxk:D (2.66) BS06 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    7200 8qxl:A (2.82) BS02 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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