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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6801 8cu8:A (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6802 8cu8:C (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6803 8cu8:D (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6804 8cu8:E (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6805 8cu8:F (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6806 8cu8:G (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6807 8cu8:H (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6808 8cu8:I (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6809 8cu8:J (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6810 8cu8:K (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6811 8cu8:L (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6812 8cu8:M (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6813 8cu8:N (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6814 8cu8:O (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6815 8cu8:P (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6816 8cu8:Q (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6817 8cu8:R (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6818 8cu8:S (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6819 8cu8:T (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6820 8cu8:U (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6821 8cu8:V (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6822 8cu8:W (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6823 8cu8:X (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6824 8cu8:Y (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    6825 8d94:A (2.44) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 N/A
    6826 8d94:B (2.44) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 N/A
    6827 8d94:C (2.44) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 N/A
    6828 8d94:D (2.44) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 N/A
    6829 8d9j:A (2.82) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    6830 8d9j:B (2.82) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    6831 8d9j:C (2.82) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    6832 8d9j:D (2.82) BS04 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    6833 8dbx:B (1.92) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6834 8dbx:B (1.92) BS04 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6835 8dbx:D (1.92) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6836 8dbx:D (1.92) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6837 8dby:B (2.26) BS01 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    6838 8dby:B (2.26) BS03 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    6839 8dby:D (2.26) BS01 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    6840 8dby:D (2.26) BS02 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    6841 8dfc:B (2.48) BS02 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    6842 8dfc:B (2.48) BS03 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    6843 8dfc:D (2.48) BS01 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    6844 8dfc:D (2.48) BS03 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    6845 8dfd:B (2.12) BS02 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    6846 8dfd:B (2.12) BS03 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    6847 8dfd:D (2.12) BS01 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    6848 8dfd:D (2.12) BS03 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    6849 8dnp:A (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6850 8dnp:B (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6851 8dnp:C (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6852 8dnp:D (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6853 8dnp:E (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6854 8dnp:F (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6855 8dnp:G (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6856 8dnp:H (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6857 8dnp:I (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6858 8dnp:J (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6859 8dnp:K (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6860 8dnp:L (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6861 8dnp:M (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6862 8dnp:N (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6863 8dnp:O (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6864 8dnp:P (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6865 8dnp:Q (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6866 8dnp:R (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6867 8dnp:S (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6868 8dnp:T (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6869 8dnp:U (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6870 8dnp:V (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6871 8dnp:W (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6872 8dnp:X (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    6873 8dpn:B (2.49) BS02 FE 1.18.6.1 GO:0005524 ... P07329 35901182
    6874 8dpn:B (2.49) BS03 FE 1.18.6.1 GO:0005524 ... P07329 35901182
    6875 8dpn:D (2.49) BS01 FE 1.18.6.1 GO:0005524 ... P07329 35901182
    6876 8dpn:D (2.49) BS02 FE 1.18.6.1 GO:0005524 ... P07329 35901182
    6877 8e3t:B (2.2) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    6878 8e3t:B (2.2) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    6879 8e3t:D (2.2) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    6880 8e3t:D (2.2) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    6881 8e3u:B (1.99) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    6882 8e3u:B (1.99) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    6883 8e3u:D (1.99) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    6884 8e3u:D (1.99) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    6885 8e3v:B (2.0) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    6886 8e3v:B (2.0) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    6887 8e3v:D (2.0) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    6888 8e3v:D (2.0) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    6889 8e73:FD (3.2) BS01 FE ? GO:0005739 ... A0A1S3VXN7 36581760
    6890 8edd:A (1.5) BS01 FE 3.1.21.2 GO:0003677 ... Q6GGE2 N/A
    6891 8edd:A (1.5) BS02 FE 3.1.21.2 GO:0003677 ... Q6GGE2 N/A
    6892 8enl:B (2.37) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6893 8enl:B (2.37) BS04 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6894 8enl:D (2.37) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6895 8enl:D (2.37) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6896 8enm:B (2.14) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6897 8enm:B (2.14) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6898 8enm:D (2.14) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6899 8enm:D (2.14) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6900 8enn:B (2.58) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6901 8enn:B (2.58) BS04 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6902 8enn:D (2.58) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6903 8enn:D (2.58) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6904 8eno:B (2.71) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6905 8eno:B (2.71) BS04 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6906 8eno:D (2.71) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6907 8eno:D (2.71) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6908 8ey3:A (1.0) BS01 FE ? GO:0046872 ... A0A1Y2XHL0 N/A
    6909 8ey4:I (1.83) BS01 FE ? GO:0046872 ... A0A1Y2XHL0 N/A
    6910 8f6t:A (2.76) BS01 FE 1.14.15.3 GO:0004497 ... A0A1I2I8Z9 36997762
    6911 8f6t:A (2.76) BS02 FE 1.14.15.3 GO:0004497 ... A0A1I2I8Z9 36997762
    6912 8f6t:A (2.76) BS03 FE 1.14.15.3 GO:0004497 ... A0A1I2I8Z9 36997762
    6913 8fei:A (3.0) BS01 FE ? GO:0005576 ... P02789 N/A
    6914 8fei:A (3.0) BS02 FE ? GO:0005576 ... P02789 N/A
    6915 8fhb:A (1.95) BS01 FE ? GO:0006400 ... A5GR51 N/A
    6916 8fhc:A (2.097) BS01 FE ? GO:0006400 ... E1VK89 N/A
    6917 8fhc:A (2.097) BS02 FE ? GO:0006400 ... E1VK89 N/A
    6918 8fhc:B (2.097) BS01 FE ? GO:0006400 ... E1VK89 N/A
    6919 8fhc:B (2.097) BS02 FE ? GO:0006400 ... E1VK89 N/A
    6920 8fqc:A (3.2) BS01 FE ? N/A A0A482MFZ0 38272938
    6921 8ful:A (2.29) BS01 FE ? GO:0005737 ... A0A402C2V4 37471626
    6922 8ful:B (2.29) BS01 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6923 8ful:B (2.29) BS02 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6924 8ful:C (2.29) BS01 FE ? GO:0005737 ... A0A402C2V4 37471626
    6925 8ful:D (2.29) BS01 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6926 8ful:D (2.29) BS02 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6927 8ful:E (2.29) BS01 FE ? GO:0005737 ... A0A402C2V4 37471626
    6928 8ful:F (2.29) BS01 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6929 8ful:F (2.29) BS02 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6930 8ful:G (2.29) BS01 FE ? GO:0005737 ... A0A402C2V4 37471626
    6931 8ful:H (2.29) BS01 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6932 8ful:H (2.29) BS02 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6933 8fum:A (1.48) BS01 FE ? GO:0005737 ... A0A402C2V4 37471626
    6934 8fum:B (1.48) BS01 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6935 8fum:B (1.48) BS02 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6936 8fum:C (1.48) BS01 FE ? GO:0005737 ... A0A402C2V4 37471626
    6937 8fum:D (1.48) BS01 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6938 8fum:D (1.48) BS02 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6939 8fum:E (1.48) BS01 FE ? GO:0005737 ... A0A402C2V4 37471626
    6940 8fum:F (1.48) BS01 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6941 8fum:F (1.48) BS02 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6942 8fum:G (1.48) BS01 FE ? GO:0005737 ... A0A402C2V4 37471626
    6943 8fum:H (1.48) BS01 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6944 8fum:H (1.48) BS02 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6945 8fun:B (2.24) BS02 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6946 8fuo:A (2.43) BS01 FE ? GO:0005737 ... A0A402C2V4 37471626
    6947 8fuo:B (2.43) BS01 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6948 8fuo:B (2.43) BS02 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6949 8fuo:C (2.43) BS01 FE ? GO:0005737 ... A0A402C2V4 37471626
    6950 8fuo:D (2.43) BS01 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6951 8fuo:D (2.43) BS02 FE ? GO:0005737 ... A0A402C2Q3 37471626
    6952 8fvv:A (1.93) BS01 FE ? GO:0016491 ... Q63J79 N/A
    6953 8fvv:A (1.93) BS02 FE ? GO:0016491 ... Q63J79 N/A
    6954 8fvv:B (1.93) BS01 FE ? GO:0016491 ... Q63J79 N/A
    6955 8fvv:B (1.93) BS02 FE ? GO:0016491 ... Q63J79 N/A
    6956 8fvv:C (1.93) BS01 FE ? GO:0016491 ... Q63J79 N/A
    6957 8fvv:C (1.93) BS02 FE ? GO:0016491 ... Q63J79 N/A
    6958 8fvv:D (1.93) BS01 FE ? GO:0016491 ... Q63J79 N/A
    6959 8fvv:D (1.93) BS02 FE ? GO:0016491 ... Q63J79 N/A
    6960 8fvv:E (1.93) BS01 FE ? GO:0016491 ... Q63J79 N/A
    6961 8fvv:E (1.93) BS02 FE ? GO:0016491 ... Q63J79 N/A
    6962 8fvv:F (1.93) BS01 FE ? GO:0016491 ... Q63J79 N/A
    6963 8fvv:F (1.93) BS02 FE ? GO:0016491 ... Q63J79 N/A
    6964 8gb1:A (2.46) BS02 FE 3.1.5.- N/A Q9Y3Z3 37233733
    6965 8gb1:B (2.46) BS03 FE 3.1.5.- N/A Q9Y3Z3 37233733
    6966 8gb1:C (2.46) BS02 FE 3.1.5.- N/A Q9Y3Z3 37233733
    6967 8gb1:D (2.46) BS03 FE 3.1.5.- N/A Q9Y3Z3 37233733
    6968 8gb2:A (3.07) BS01 FE 3.1.5.- N/A Q9Y3Z3 37233733
    6969 8gb2:B (3.07) BS01 FE 3.1.5.- N/A Q9Y3Z3 37233733
    6970 8gb2:C (3.07) BS01 FE 3.1.5.- N/A Q9Y3Z3 37233733
    6971 8gb2:D (3.07) BS01 FE 3.1.5.- N/A Q9Y3Z3 37233733
    6972 8h2t:B (2.59) BS03 FE ? GO:0005506 ... C5CSP6 37459330
    6973 8h2t:D (2.59) BS03 FE ? GO:0005506 ... C5CSP6 37459330
    6974 8h2t:G (2.59) BS03 FE ? GO:0005506 ... C5CSP6 37459330
    6975 8h7v:A (1.97) BS02 FE ? GO:0046872 ... S5TUM1 36974966
    6976 8h7v:B (1.97) BS02 FE ? GO:0046872 ... S5TUM1 36974966
    6977 8h7y:A (2.14) BS01 FE ? GO:0046872 ... S5TUM1 36974966
    6978 8h7y:B (2.14) BS01 FE ? GO:0046872 ... S5TUM1 36974966
    6979 8hct:A (2.26) BS01 FE 1.16.3.1 GO:0005737 ... A0A8F4Y4C2 36904538
    6980 8hct:A (2.26) BS02 FE 1.16.3.1 GO:0005737 ... A0A8F4Y4C2 36904538
    6981 8hi7:B (3.25) BS01 FE ? GO:0046872 ... A0A8T8BZJ9 37652001
    6982 8hi7:B (3.25) BS02 FE ? GO:0046872 ... A0A8T8BZJ9 37652001
    6983 8hi8:B (3.49) BS01 FE ? GO:0046872 ... A0A8T8BZJ9 37652001
    6984 8hi8:B (3.49) BS02 FE ? GO:0046872 ... A0A8T8BZJ9 37652001
    6985 8hi8:B (3.49) BS03 FE ? GO:0046872 ... A0A8T8BZJ9 37652001
    6986 8hju:L (2.8) BS07 FE ? GO:0009772 ... A7NQE8 37737710
    6987 8hju:M (2.8) BS05 FE ? GO:0009772 ... A7NQE8 37737710
    6988 8hjv:M (3.1) BS07 FE ? GO:0009772 ... A7NQE8 37737710
    6989 8i6y:A (3.26) BS01 FE 1.13.11.58 GO:0005737 ... Q06327 N/A
    6990 8i6y:B (3.26) BS01 FE 1.13.11.58 GO:0005737 ... Q06327 N/A
    6991 8iey:A (2.0) BS01 FE 2.3.1.234 GO:0002949 ... O66986 N/A
    6992 8ifx:A (2.0) BS01 FE 2.3.1.234 GO:0002949 ... O66986 N/A
    6993 8in2:A (3.08) BS01 FE 1.13.11.29 GO:0005737 ... Q70FG7 N/A
    6994 8in2:B (3.08) BS01 FE 1.13.11.29 GO:0005737 ... Q70FG7 N/A
    6995 8ito:A (2.1) BS01 FE ? GO:0005506 ... Q726L3 N/A
    6996 8ito:B (2.1) BS01 FE ? GO:0005506 ... Q726L3 N/A
    6997 8j5o:L (2.9) BS04 FE ? GO:0009772 ... A7NQE8 37737710
    6998 8j5o:M (2.9) BS03 FE ? GO:0009772 ... A7NQE8 37737710
    6999 8j5p:L (3.1) BS07 FE ? GO:0009772 ... A7NQE8 37737710
    7000 8j5p:M (3.1) BS05 FE ? GO:0009772 ... A7NQE8 37737710
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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