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BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6601 7y6p:A (3.3) BS02 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    6602 7y6p:F (3.3) BS01 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    6603 7y6p:G (3.3) BS02 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    6604 7y6p:H (3.3) BS02 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    6605 7y6p:I (3.3) BS01 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    6606 7y6p:K (3.3) BS03 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    6607 7y6p:M (3.3) BS03 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    6608 7y6p:N (3.3) BS02 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    6609 7y6p:Q (3.3) BS02 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    6610 7y6p:R (3.3) BS03 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    6611 7y6p:T (3.3) BS01 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    6612 7y6p:W (3.3) BS02 FE 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    6613 7y74:A (1.98) BS01 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6614 7y74:A (1.98) BS02 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6615 7y74:B (1.98) BS01 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6616 7y74:B (1.98) BS02 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6617 7y74:C (1.98) BS01 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6618 7y74:C (1.98) BS02 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6619 7y74:C (1.98) BS03 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6620 7y74:D (1.98) BS01 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6621 7y74:D (1.98) BS02 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6622 7y74:D (1.98) BS03 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6623 7y74:E (1.98) BS01 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6624 7y74:E (1.98) BS02 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6625 7y74:F (1.98) BS01 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6626 7y74:F (1.98) BS02 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6627 7y74:G (1.98) BS01 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6628 7y74:G (1.98) BS02 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6629 7y74:H (1.98) BS01 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6630 7y74:H (1.98) BS02 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6631 7y74:I (1.98) BS01 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6632 7y74:I (1.98) BS02 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6633 7y74:J (1.98) BS01 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6634 7y74:J (1.98) BS02 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6635 7y74:K (1.98) BS01 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6636 7y74:K (1.98) BS02 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6637 7y74:L (1.98) BS01 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6638 7y74:L (1.98) BS02 FE 1.16.3.1 GO:0004322 ... Q2QJV4 N/A
    6639 7y7a:A9 (4.3) BS05 FE 1.10.3.9 GO:0005506 ... W0RZ08 36922595
    6640 7y7a:AE (4.3) BS05 FE 1.10.3.9 GO:0005506 ... W0RZ08 36922595
    6641 7y7a:AO (4.3) BS05 FE 1.10.3.9 GO:0005506 ... W0RZ08 36922595
    6642 7y7a:AZ (4.3) BS05 FE 1.10.3.9 GO:0005506 ... W0RZ08 36922595
    6643 7y7a:Am (4.3) BS05 FE 1.10.3.9 GO:0005506 ... W0RZ08 36922595
    6644 7y7a:a9 (4.3) BS05 FE 1.10.3.9 GO:0005506 ... W0RZ08 36922595
    6645 7y7a:aE (4.3) BS04 FE 1.10.3.9 GO:0005506 ... W0RZ08 36922595
    6646 7y7a:aO (4.3) BS06 FE 1.10.3.9 GO:0005506 ... W0RZ08 36922595
    6647 7y7a:aZ (4.3) BS06 FE 1.10.3.9 GO:0005506 ... W0RZ08 36922595
    6648 7y7a:am (4.3) BS05 FE 1.10.3.9 GO:0005506 ... W0RZ08 36922595
    6649 7y7a:dO (4.3) BS02 FE 1.10.3.9 GO:0005506 ... W0RYZ0 36922595
    6650 7y7a:dZ (4.3) BS02 FE 1.10.3.9 GO:0005506 ... W0RYZ0 36922595
    6651 7yhe:A (1.67) BS02 FE ? GO:0005506 ... A6YEH4 36176888
    6652 7yls:B (1.8) BS02 FE ? GO:0005506 ... C5CSP6 N/A
    6653 7yml:L (2.6) BS09 FE ? GO:0009772 ... P19057 36792596
    6654 7yml:M (2.6) BS06 FE ? GO:0009772 ... P11847 36792596
    6655 7yvv:A (2.1) BS01 FE 1.13.11.27 GO:0003868 ... A0A7H8HIR4 N/A
    6656 7z0s:F (2.6) BS03 FE ? GO:0003954 ... P16432 36104349
    6657 7z0t:F (3.4) BS03 FE ? GO:0003954 ... P16432 36104349
    6658 7z8d:L (2.14) BS06 FE ? GO:0009772 ... P0C0Y8 N/A
    6659 7z8d:M (2.14) BS09 FE ? GO:0009772 ... P0C0Y9 N/A
    6660 7zc6:A (4.27) BS01 FE 7.-.-.- GO:0005886 ... A0A923J0P9 36274063
    6661 7zc6:E (4.27) BS01 FE 7.-.-.- GO:0005886 ... A0A923IZB8 36274063
    6662 7zgy:A (2.54) BS07 FE ? N/A Q9RRB6 35577074
    6663 7zgy:B (2.54) BS08 FE ? N/A Q9RRB6 35577074
    6664 7zgy:C (2.54) BS08 FE ? N/A Q9RRB6 35577074
    6665 7zif:A (1.8686) BS01 FE 1.14.16.4 GO:0004497 ... P17752 35921615
    6666 7zig:A (1.80888) BS02 FE 1.14.16.4 GO:0004497 ... P17752 35921615
    6667 7zih:A (1.46891) BS01 FE 1.14.16.4 GO:0004497 ... P17752 35921615
    6668 7zii:A (1.628) BS01 FE 1.14.16.4 GO:0004497 ... P17752 35921615
    6669 7zij:A (1.94678) BS02 FE 1.14.16.4 GO:0004497 ... P17752 35921615
    6670 7zik:A (2.58926) BS01 FE 1.14.16.4 GO:0004497 ... P17752 35921615
    6671 7zik:B (2.58926) BS01 FE 1.14.16.4 GO:0004497 ... P17752 35921615
    6672 7zoe:A (1.5) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    6673 7zxc:X (1.696) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 N/A
    6674 8a2l:AAA (2.301) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36714262
    6675 8a2m:AAA (1.57) BS02 FE 1.16.3.1 GO:0004322 ... P02794 36714262
    6676 8a5n:AAA (1.52) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36714262
    6677 8a82:A (2.05) BS01 FE ? GO:0046872 ... K7WEY7 36917986
    6678 8a90:A (2.574) BS01 FE ? GO:0004497 ... A0A7S9SWM2 37366538
    6679 8a90:A (2.574) BS02 FE ? GO:0004497 ... A0A7S9SWM2 37366538
    6680 8a90:B (2.574) BS01 FE ? GO:0004497 ... A0A7S9SWM2 37366538
    6681 8a90:B (2.574) BS02 FE ? GO:0004497 ... A0A7S9SWM2 37366538
    6682 8aav:A (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 36504125
    6683 8aav:B (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 36504125
    6684 8aav:C (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 36504125
    6685 8aav:D (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 36504125
    6686 8aav:E (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 36504125
    6687 8aav:F (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 36504125
    6688 8aav:G (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 36504125
    6689 8aav:H (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 36504125
    6690 8acq:A (2.54) BS07 FE ? N/A Q9RRB6 36502921
    6691 8acq:B (2.54) BS08 FE ? N/A Q9RRB6 36502921
    6692 8acq:C (2.54) BS08 FE ? N/A Q9RRB6 36502921
    6693 8afj:A (1.6) BS01 FE ? GO:0006400 ... A0A179QS89 N/A
    6694 8afj:A (1.6) BS02 FE ? GO:0006400 ... A0A179QS89 N/A
    6695 8afj:B (1.6) BS01 FE ? GO:0006400 ... A0A179QS89 N/A
    6696 8afj:B (1.6) BS02 FE ? GO:0006400 ... A0A179QS89 N/A
    6697 8agd:A (3.5) BS07 FE ? N/A Q9RRB6 36502921
    6698 8agd:B (3.5) BS08 FE ? N/A Q9RRB6 36502921
    6699 8agd:C (3.5) BS08 FE ? N/A Q9RRB6 36502921
    6700 8ali:A (1.6) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    6701 8alj:A (1.68) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    6702 8apz:A (1.75) BS02 FE 3.5.1.87 GO:0008652 ... Q6DTN4 36342942
    6703 8apz:A (1.75) BS04 FE 3.5.1.87 GO:0008652 ... Q6DTN4 36342942
    6704 8apz:B (1.75) BS03 FE 3.5.1.87 GO:0008652 ... Q6DTN4 36342942
    6705 8apz:B (1.75) BS05 FE 3.5.1.87 GO:0008652 ... Q6DTN4 36342942
    6706 8aq0:A (2.3) BS02 FE 3.5.1.87 GO:0008652 ... Q6DTN4 36342942
    6707 8aq0:A (2.3) BS04 FE 3.5.1.87 GO:0008652 ... Q6DTN4 36342942
    6708 8aq0:B (2.3) BS03 FE 3.5.1.87 GO:0008652 ... Q6DTN4 36342942
    6709 8aq0:B (2.3) BS05 FE 3.5.1.87 GO:0008652 ... Q6DTN4 36342942
    6710 8avk:A (2.1) BS01 FE 1.15.1.1 GO:0004784 ... A0A0G1X6V3 37037909
    6711 8avk:B (2.1) BS01 FE 1.15.1.1 GO:0004784 ... A0A0G1X6V3 37037909
    6712 8avl:A (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P53638 37037909
    6713 8avl:B (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P53638 37037909
    6714 8avl:C (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P53638 37037909
    6715 8avl:D (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P53638 37037909
    6716 8avl:E (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P53638 37037909
    6717 8avl:F (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P53638 37037909
    6718 8avl:G (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P53638 37037909
    6719 8avl:H (1.6) BS01 FE 1.15.1.1 GO:0004784 ... P53638 37037909
    6720 8avm:A (2.0) BS01 FE 1.15.1.1 GO:0004784 ... P53638 37037909
    6721 8avm:B (2.0) BS01 FE 1.15.1.1 GO:0004784 ... P53638 37037909
    6722 8avm:C (2.0) BS01 FE 1.15.1.1 GO:0004784 ... P53638 37037909
    6723 8avm:D (2.0) BS01 FE 1.15.1.1 GO:0004784 ... P53638 37037909
    6724 8avm:E (2.0) BS01 FE 1.15.1.1 GO:0004784 ... P53638 37037909
    6725 8avm:F (2.0) BS01 FE 1.15.1.1 GO:0004784 ... P53638 37037909
    6726 8axy:A (1.05) BS01 FE 3.1.21.2 GO:0003677 ... Q6GGE2 N/A
    6727 8axy:A (1.05) BS02 FE 3.1.21.2 GO:0003677 ... Q6GGE2 N/A
    6728 8b4a:A (3.06) BS01 FE 3.1.2.32 GO:0016787 ... P20581 36456567
    6729 8b4a:A (3.06) BS02 FE 3.1.2.32 GO:0016787 ... P20581 36456567
    6730 8b4a:B (3.06) BS01 FE 3.1.2.32 GO:0016787 ... P20581 36456567
    6731 8b4a:B (3.06) BS02 FE 3.1.2.32 GO:0016787 ... P20581 36456567
    6732 8b64:L (2.589) BS06 FE ? GO:0009772 ... P19057 36738736
    6733 8b64:M (2.589) BS04 FE ? GO:0009772 ... P11847 36738736
    6734 8b7o:AAA (1.17) BS02 FE 1.16.3.1 GO:0004322 ... P02794 36430642
    6735 8baw:A (1.471) BS01 FE N/A GO:0006826 ... N/A 37428843
    6736 8baw:B (1.471) BS01 FE N/A GO:0006826 ... N/A 37428843
    6737 8bax:A (1.38) BS01 FE N/A GO:0006826 ... N/A 37428843
    6738 8bb9:A (1.68) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    6739 8bba:A (1.5) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    6740 8bbc:A (1.71) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    6741 8bef:O (2.13) BS01 FE ? GO:0005515 ... Q9SRR8 36585502
    6742 8bf6:A (1.969) BS01 FE N/A GO:0006826 ... N/A 37428843
    6743 8bgw:A (2.2) BS03 FE N/A GO:0004129 ... N/A 37296134
    6744 8bgw:B (2.2) BS08 FE N/A GO:0004129 ... N/A 37296134
    6745 8bhx:A (1.25) BS01 FE 1.15.1.1 GO:0004784 ... Q47RC2 37725277
    6746 8bhx:B (1.25) BS01 FE 1.15.1.1 GO:0004784 ... Q47RC2 37725277
    6747 8bj9:A (2.069) BS01 FE N/A GO:0006826 ... N/A 37428843
    6748 8bpx:O (2.09) BS01 FE ? GO:0005515 ... Q9SRR8 36585502
    6749 8bq5:O (2.73) BS01 FE ? GO:0051536 ... A0A384LA38 36585502
    6750 8bq6:O (2.8) BS01 FE ? GO:0051536 ... A0A384LA38 36585502
    6751 8brc:A (3.17) BS01 FE ? GO:0005515 ... P02787 36602395
    6752 8brn:A (2.0) BS02 FE 3.1.3.2 GO:0003993 ... P80366 37087894
    6753 8brn:B (2.0) BS02 FE 3.1.3.2 GO:0003993 ... P80366 37087894
    6754 8brn:C (2.0) BS02 FE 3.1.3.2 GO:0003993 ... P80366 37087894
    6755 8brn:D (2.0) BS02 FE 3.1.3.2 GO:0003993 ... P80366 37087894
    6756 8bsv:A (1.53) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    6757 8bsw:A (1.58) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    6758 8bsx:A (1.38) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    6759 8bsy:A (1.4) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    6760 8bts:B (3.03) BS02 FE 1.18.6.1 GO:0005524 ... P07329 37234119
    6761 8bts:B (3.03) BS03 FE 1.18.6.1 GO:0005524 ... P07329 37234119
    6762 8bts:D (3.03) BS01 FE 1.18.6.1 GO:0005524 ... P07329 37234119
    6763 8bts:D (3.03) BS03 FE 1.18.6.1 GO:0005524 ... P07329 37234119
    6764 8bts:I (3.03) BS02 FE 1.18.6.1 GO:0005524 ... P07329 37234119
    6765 8bts:I (3.03) BS03 FE 1.18.6.1 GO:0005524 ... P07329 37234119
    6766 8bts:L (3.03) BS01 FE 1.18.6.1 GO:0005524 ... P07329 37234119
    6767 8bts:L (3.03) BS03 FE 1.18.6.1 GO:0005524 ... P07329 37234119
    6768 8c3f:L (2.6) BS07 FE ? GO:0009772 ... Q3J1A5 36837660
    6769 8c3f:M (2.6) BS06 FE ? GO:0009772 ... Q3J1A6 36837660
    6770 8c4y:AAA (1.6) BS01 FE ? GO:0006826 ... Q7V0T9 38489389
    6771 8c5x:L (2.6) BS07 FE ? GO:0009772 ... Q3J1A5 36837657
    6772 8c5x:M (2.6) BS06 FE ? GO:0009772 ... Q3J1A6 36837657
    6773 8c6k:L (2.86) BS07 FE ? GO:0009772 ... Q3J1A5 36837657
    6774 8c6k:M (2.86) BS06 FE ? GO:0009772 ... Q3J1A6 36837657
    6775 8c7c:L (2.6) BS06 FE ? GO:0009772 ... Q3J1A5 36837657
    6776 8c7c:M (2.6) BS06 FE ? GO:0009772 ... Q3J1A6 36837657
    6777 8c87:L (2.45) BS06 FE ? GO:0009772 ... Q3J1A5 36837657
    6778 8c87:M (2.45) BS07 FE ? GO:0009772 ... Q3J1A6 36837657
    6779 8c88:L (2.75) BS06 FE ? GO:0009772 ... Q3J1A5 36837657
    6780 8c88:M (2.75) BS07 FE ? GO:0009772 ... Q3J1A6 36837657
    6781 8ch4:A (2.1) BS01 FE 1.13.11.64 GO:0051213 ... D3WZ86 37326584
    6782 8ch4:B (2.1) BS01 FE 1.13.11.64 GO:0051213 ... D3WZ86 37326584
    6783 8ch4:C (2.1) BS01 FE 1.13.11.64 GO:0051213 ... D3WZ86 37326584
    6784 8ch4:D (2.1) BS01 FE 1.13.11.64 GO:0051213 ... D3WZ86 37326584
    6785 8ci9:C (1.41) BS01 FE 1.14.20.8 GO:0009611 ... A0A0N9HQ36 N/A
    6786 8cji:A (1.65) BS01 FE 1.14.16.4 GO:0004497 ... P17752 37905925
    6787 8cjj:A (1.66416) BS01 FE 1.14.16.4 GO:0004497 ... P17752 37905925
    6788 8cjk:A (1.45915) BS01 FE 1.14.16.4 GO:0004497 ... P17752 37905925
    6789 8cjl:A (1.83) BS01 FE 1.14.16.4 GO:0004497 ... P17752 37905925
    6790 8cjm:A (1.9) BS01 FE 1.14.16.4 GO:0004497 ... P17752 37905925
    6791 8cjn:A (1.68081) BS01 FE 1.14.16.4 GO:0004497 ... P17752 37905925
    6792 8cjo:A (1.86634) BS01 FE 1.14.16.4 GO:0004497 ... P17752 37905925
    6793 8cqm:A (2.0) BS02 FE 3.1.4.3 GO:0004629 ... P33378 37838694
    6794 8cqm:A (2.0) BS03 FE 3.1.4.3 GO:0004629 ... P33378 37838694
    6795 8cqm:B (2.0) BS01 FE 3.1.4.3 GO:0004629 ... P33378 37838694
    6796 8cqm:B (2.0) BS02 FE 3.1.4.3 GO:0004629 ... P33378 37838694
    6797 8crs:B (2.04) BS04 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6798 8crs:B (2.04) BS05 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6799 8crs:D (2.04) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    6800 8crs:D (2.04) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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