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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 1nfv:K (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    402 1nfv:K (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    403 1nfv:L (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    404 1nfv:L (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    405 1nfv:M (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    406 1nfv:M (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    407 1nfv:N (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    408 1nfv:N (1.95) BS03 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    409 1nfv:O (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    410 1nfv:O (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    411 1nfv:P (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    412 1nfv:P (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    413 1nkx:A (1.9) BS01 FE 3.4.21.- GO:0005576 ... P24627 12888354
    414 1nmo:A (2.2) BS01 FE ? GO:0005737 ... P0AFP6 14519207
    415 1nmo:A (2.2) BS02 FE ? GO:0005737 ... P0AFP6 14519207
    416 1nmo:B (2.2) BS01 FE ? GO:0005737 ... P0AFP6 14519207
    417 1nmo:B (2.2) BS02 FE ? GO:0005737 ... P0AFP6 14519207
    418 1nmo:C (2.2) BS01 FE ? GO:0005737 ... P0AFP6 14519207
    419 1nmo:C (2.2) BS02 FE ? GO:0005737 ... P0AFP6 14519207
    420 1nmo:D (2.2) BS01 FE ? GO:0005737 ... P0AFP6 14519207
    421 1nmo:D (2.2) BS02 FE ? GO:0005737 ... P0AFP6 14519207
    422 1nmo:E (2.2) BS01 FE ? GO:0005737 ... P0AFP6 14519207
    423 1nmo:E (2.2) BS02 FE ? GO:0005737 ... P0AFP6 14519207
    424 1nmo:F (2.2) BS01 FE ? GO:0005737 ... P0AFP6 14519207
    425 1nmo:F (2.2) BS02 FE ? GO:0005737 ... P0AFP6 14519207
    426 1nnf:A (1.1) BS01 FE ? GO:0006826 ... P35755 12533539
    427 1nnt:A (2.3) BS01 FE ? GO:0005576 ... P02789 8218271
    428 1no3:A (2.15) BS01 FE 1.13.11.58 GO:0005737 ... P09186 14993710
    429 1nx4:A (2.4) BS01 FE 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    430 1nx4:B (2.4) BS01 FE 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    431 1nx4:C (2.4) BS01 FE 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    432 1nx8:A (2.3) BS01 FE 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    433 1nx8:B (2.3) BS01 FE 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    434 1nx8:C (2.3) BS01 FE 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    435 1o12:A (2.5) BS01 FE 3.5.1.25 GO:0006040 ... Q9WZS1 N/A
    436 1o12:B (2.5) BS01 FE 3.5.1.25 GO:0006040 ... Q9WZS1 N/A
    437 1o2d:A (1.3) BS01 FE 1.1.1.1 GO:0000166 ... Q9X022 14705036
    438 1o2d:B (1.3) BS01 FE 1.1.1.1 GO:0000166 ... Q9X022 14705036
    439 1o7g:A (1.7) BS03 FE 1.14.12.12 GO:0005506 ... P0A110 12586937
    440 1o7h:A (2.2) BS01 FE 1.14.12.12 GO:0005506 ... P0A110 12586937
    441 1o7m:A (1.75) BS03 FE 1.14.12.12 GO:0005506 ... P0A110 12586937
    442 1o7n:A (1.4) BS04 FE 1.14.12.12 GO:0005506 ... P0A110 12586937
    443 1o7p:A (1.95) BS03 FE 1.14.12.12 GO:0005506 ... P0A110 12586937
    444 1o7w:A (1.9) BS02 FE 1.14.12.12 GO:0005506 ... P0A110 12586937
    445 1oq4:A (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    446 1oq4:A (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    447 1oq4:B (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    448 1oq4:B (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    449 1oq4:C (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    450 1oq4:C (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    451 1oq4:D (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    452 1oq4:D (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    453 1oq4:E (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    454 1oq4:E (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    455 1oq4:F (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    456 1oq4:F (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    457 1oq9:A (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    458 1oq9:A (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    459 1oqg:A (1.9) BS02 FE ? GO:0005576 ... P02787 12795604
    460 1oqh:A (2.4) BS02 FE ? GO:0005576 ... P02787 12795604
    461 1oqu:A (2.0) BS01 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    462 1oqu:A (2.0) BS02 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    463 1oqu:A (2.0) BS03 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    464 1oqu:B (2.0) BS01 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    465 1oqu:B (2.0) BS02 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    466 1oqu:C (2.0) BS01 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    467 1oqu:C (2.0) BS02 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    468 1oqu:C (2.0) BS03 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    469 1oqu:C (2.0) BS04 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    470 1oqu:C (2.0) BS05 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    471 1oqu:D (2.0) BS01 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    472 1oqu:D (2.0) BS02 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    473 1oqu:D (2.0) BS03 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    474 1ovb:A (2.3) BS01 FE ? GO:0005576 ... P56410 15299534
    475 1ovt:A (2.4) BS01 FE ? GO:0005506 ... P02789 7490743
    476 1ovt:A (2.4) BS02 FE ? GO:0005506 ... P02789 7490743
    477 1pah:A (2.0) BS01 FE 1.14.16.1 GO:0004497 ... P00439 9406548
    478 1pcr:L (2.65) BS06 FE ? GO:0009772 ... P0C0Y8 7866744
    479 1pcr:M (2.65) BS04 FE ? GO:0009772 ... P0C0Y9 7866744
    480 1pfr:A (2.2) BS01 FE 1.17.4.1 GO:0004748 ... P69924 8805591
    481 1pfr:A (2.2) BS02 FE 1.17.4.1 GO:0004748 ... P69924 8805591
    482 1pfr:B (2.2) BS01 FE 1.17.4.1 GO:0004748 ... P69924 8805591
    483 1pfr:B (2.2) BS02 FE 1.17.4.1 GO:0004748 ... P69924 8805591
    484 1phz:A (2.2) BS01 FE 1.14.16.1 GO:0004497 ... P04176 10331871
    485 1pim:A (2.0) BS01 FE 1.17.4.1 GO:0004748 ... P69924 N/A
    486 1pim:A (2.0) BS02 FE 1.17.4.1 GO:0004748 ... P69924 N/A
    487 1pim:B (2.0) BS01 FE 1.17.4.1 GO:0004748 ... P69924 N/A
    488 1pim:B (2.0) BS02 FE 1.17.4.1 GO:0004748 ... P69924 N/A
    489 1piu:A (2.2) BS01 FE 1.17.4.1 GO:0004748 ... P69924 N/A
    490 1piu:A (2.2) BS02 FE 1.17.4.1 GO:0004748 ... P69924 N/A
    491 1piu:B (2.2) BS01 FE 1.17.4.1 GO:0004748 ... P69924 N/A
    492 1piu:B (2.2) BS02 FE 1.17.4.1 GO:0004748 ... P69924 N/A
    493 1piy:A (1.68) BS01 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    494 1piy:A (1.68) BS02 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    495 1piy:B (1.68) BS01 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    496 1piy:B (1.68) BS02 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    497 1piz:A (1.9) BS01 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    498 1piz:A (1.9) BS02 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    499 1piz:B (1.9) BS01 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    500 1piz:B (1.9) BS02 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    501 1pj0:A (1.9) BS01 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    502 1pj0:A (1.9) BS02 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    503 1pj0:B (1.9) BS01 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    504 1pj0:B (1.9) BS02 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    505 1pj1:A (1.95) BS01 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    506 1pj1:A (1.95) BS02 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    507 1pj1:B (1.95) BS01 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    508 1pj1:B (1.95) BS02 FE 1.17.4.1 GO:0004748 ... P69924 14677973
    509 1prc:L (2.3) BS05 FE ? GO:0009772 ... P06009 7877166
    510 1prc:M (2.3) BS03 FE ? GO:0009772 ... P06010 7877166
    511 1pss:L (3.0) BS04 FE ? GO:0009772 ... P0C0Y8 8161514
    512 1pss:M (3.0) BS02 FE ? GO:0009772 ... P0C0Y9 8161514
    513 1pst:L (3.0) BS05 FE ? GO:0009772 ... P0C0Y8 8161514
    514 1pst:M (3.0) BS04 FE ? GO:0009772 ... P0C0Y9 8161514
    515 1q0c:A (2.1) BS01 FE 1.13.11.15 GO:0046872 ... Q45135 15028678
    516 1q0c:B (2.1) BS01 FE 1.13.11.15 GO:0046872 ... Q45135 15028678
    517 1q0c:C (2.1) BS01 FE 1.13.11.15 GO:0046872 ... Q45135 15028678
    518 1q0c:D (2.1) BS01 FE 1.13.11.15 GO:0046872 ... Q45135 15028678
    519 1q0o:A (2.3) BS01 FE 1.13.11.15 GO:0046872 ... Q45135 15028678
    520 1q0o:B (2.3) BS01 FE 1.13.11.15 GO:0046872 ... Q45135 15028678
    521 1qfc:A (2.7) BS01 FE 3.1.3.2 GO:0003993 ... P29288 10388567
    522 1qfc:A (2.7) BS02 FE 3.1.3.2 GO:0003993 ... P29288 10388567
    523 1qgh:A (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    524 1qgh:A (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    525 1qgh:B (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    526 1qgh:B (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    527 1qgh:C (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    528 1qgh:C (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    529 1qgh:D (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    530 1qgh:D (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    531 1qgh:E (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    532 1qgh:E (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    533 1qgh:F (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    534 1qgh:F (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    535 1qgh:G (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    536 1qgh:G (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    537 1qgh:H (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    538 1qgh:H (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    539 1qgh:I (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    540 1qgh:I (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    541 1qgh:J (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    542 1qgh:J (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    543 1qgh:K (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    544 1qgh:K (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    545 1qgh:L (2.35) BS01 FE 1.16.-.- GO:0005737 ... P80725 10625425
    546 1qgh:L (2.35) BS02 FE 1.16.-.- GO:0005737 ... P80725 10625425
    547 1qhw:A (2.2) BS01 FE 3.1.3.2 GO:0003993 ... P29288 10438611
    548 1qhw:A (2.2) BS02 FE 3.1.3.2 GO:0003993 ... P29288 10438611
    549 1qiq:A (1.5) BS02 FE 1.21.3.1 GO:0005506 ... P05326 10537113
    550 1qnn:A (1.8) BS01 FE 1.15.1.1 GO:0004784 ... P19665 10848964
    551 1qnn:B (1.8) BS01 FE 1.15.1.1 GO:0004784 ... P19665 10848964
    552 1qnn:C (1.8) BS01 FE 1.15.1.1 GO:0004784 ... P19665 10848964
    553 1qnn:D (1.8) BS01 FE 1.15.1.1 GO:0004784 ... P19665 10848964
    554 1qyb:A (1.75) BS01 FE ? GO:0005506 ... P24931 15023070
    555 1qyb:A (1.75) BS02 FE ? GO:0005506 ... P24931 15023070
    556 1r2f:A (2.1) BS01 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    557 1r2f:A (2.1) BS02 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    558 1r2f:B (2.1) BS01 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    559 1r2f:B (2.1) BS02 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    560 1r9x:A (1.58) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 15381761
    561 1r9y:A (1.57) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 15381761
    562 1r9z:A (1.32) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 15381761
    563 1ra0:A (1.12) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 15381761
    564 1ra5:A (1.4) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 15381761
    565 1rak:A (1.32) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 15381761
    566 1rcw:A (2.5) BS01 FE 1.3.3.- GO:0005576 ... O84616 15087448
    567 1rcw:A (2.5) BS02 FE 1.3.3.- GO:0005576 ... O84616 15087448
    568 1rcw:B (2.5) BS01 FE 1.3.3.- GO:0005576 ... O84616 15087448
    569 1rcw:B (2.5) BS02 FE 1.3.3.- GO:0005576 ... O84616 15087448
    570 1rcw:C (2.5) BS01 FE 1.3.3.- GO:0005576 ... O84616 15087448
    571 1rcw:C (2.5) BS02 FE 1.3.3.- GO:0005576 ... O84616 15087448
    572 1rdg:A (1.4) BS01 FE ? GO:0005506 ... P00270 3441010
    573 1rdv:A (2.0) BS01 FE ? GO:0005506 ... P15412 10089348
    574 1rg5:L (2.5) BS05 FE ? GO:0009772 ... P0C0Y8 15130469
    575 1rg5:M (2.5) BS03 FE ? GO:0009772 ... P0C0Y9 15130469
    576 1rgn:L (2.8) BS05 FE ? GO:0009772 ... P0C0Y8 15130469
    577 1rgn:M (2.8) BS03 FE ? GO:0009772 ... P0C0Y9 15130469
    578 1rnr:A (2.5) BS01 FE 1.17.4.1 GO:0004748 ... P69924 8373782
    579 1rnr:A (2.5) BS02 FE 1.17.4.1 GO:0004748 ... P69924 8373782
    580 1rnr:B (2.5) BS01 FE 1.17.4.1 GO:0004748 ... P69924 8373782
    581 1rnr:B (2.5) BS02 FE 1.17.4.1 GO:0004748 ... P69924 8373782
    582 1rov:A (2.0) BS01 FE 1.13.11.58 GO:0005737 ... P09186 14971933
    583 1rqk:L (2.7) BS05 FE ? GO:0009772 ... P0C0Y8 15130469
    584 1rqk:M (2.7) BS03 FE ? GO:0009772 ... P0C0Y9 15130469
    585 1rsv:A (2.2) BS01 FE 1.17.4.1 GO:0004748 ... P69924 11328804
    586 1rsv:A (2.2) BS02 FE 1.17.4.1 GO:0004748 ... P69924 11328804
    587 1rsv:B (2.2) BS01 FE 1.17.4.1 GO:0004748 ... P69924 11328804
    588 1rsv:B (2.2) BS02 FE 1.17.4.1 GO:0004748 ... P69924 11328804
    589 1rxf:A (1.5) BS01 FE 1.14.20.1 GO:0005506 ... P18548 9723623
    590 1rxg:A (1.5) BS01 FE 1.14.20.1 GO:0005506 ... P18548 9723623
    591 1ryo:A (1.2) BS02 FE ? GO:0005576 ... P02787 15123433
    592 1ryt:A (2.1) BS01 FE ? GO:0005506 ... P24931 8646540
    593 1ryt:A (2.1) BS02 FE ? GO:0005506 ... P24931 8646540
    594 1ryt:A (2.1) BS03 FE ? GO:0005506 ... P24931 8646540
    595 1s2z:A (1.75) BS01 FE ? GO:0005506 ... P24931 15134924
    596 1s2z:A (1.75) BS03 FE ? GO:0005506 ... P24931 15134924
    597 1s30:A (2.05) BS01 FE ? GO:0005506 ... P24931 15134924
    598 1s30:A (2.05) BS03 FE ? GO:0005506 ... P24931 15134924
    599 1s5l:A (3.5) BS01 FE 1.10.3.9 GO:0005506 ... P0A444 14764885
    600 1s5l:D (3.5) BS01 FE 1.10.3.9 GO:0005506 ... Q8CM25 14764885

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218