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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5401 6yd0:D (1.95) BS02 FE 1.14.13.25 GO:0004497 ... P27353 N/A
    5402 6ydu:D (1.95) BS01 FE 1.14.13.25 GO:0004497 ... P27353 N/A
    5403 6ydu:D (1.95) BS02 FE 1.14.13.25 GO:0004497 ... P27353 N/A
    5404 6yom:A (3.25) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5405 6yom:B (3.25) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5406 6ypv:A (2.1) BS01 FE 1.14.11.33 GO:0005515 ... P05050 32939282
    5407 6yvw:A (1.97) BS01 FE 1.14.11.29 GO:0005506 ... Q9GZT9 33319810
    5408 6yw0:A (2.2) BS01 FE 1.14.11.29 GO:0005506 ... Q9GZT9 33319810
    5409 6z02:L (2.1) BS07 FE ? GO:0009772 ... P0C0Y8 33209319
    5410 6z02:M (2.1) BS06 FE ? GO:0009772 ... P0C0Y9 33209319
    5411 6z1j:L (2.1) BS06 FE ? GO:0009772 ... P0C0Y8 33209319
    5412 6z1j:M (2.1) BS06 FE ? GO:0009772 ... P0C0Y9 33209319
    5413 6z27:L (2.1) BS07 FE ? GO:0009772 ... P0C0Y8 33209319
    5414 6z27:M (2.1) BS06 FE ? GO:0009772 ... P0C0Y9 33209319
    5415 6z5r:L (2.8) BS08 FE ? GO:0009772 ... O83005 33523887
    5416 6z5r:M (2.8) BS04 FE ? GO:0009772 ... A0A4Z7 33523887
    5417 6z5s:L (2.65) BS04 FE ? GO:0009772 ... O83005 33523887
    5418 6z5s:M (2.65) BS06 FE ? GO:0009772 ... A0A4Z7 33523887
    5419 6zam:A (1.55) BS01 FE 1.21.3.1 GO:0005506 ... P05326 34417180
    5420 6zan:A (1.35) BS01 FE 1.21.3.1 GO:0005506 ... P05326 34417180
    5421 6zao:A (1.66) BS01 FE 1.21.3.1 GO:0005506 ... P05326 34417180
    5422 6zap:A (1.36) BS03 FE 1.21.3.1 GO:0005506 ... P05326 34417180
    5423 6zgp:A (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5424 6zgp:B (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5425 6zgp:C (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5426 6zgp:D (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5427 6zgp:E (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5428 6zgp:F (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5429 6zgp:G (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5430 6zgp:H (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5431 6zgp:I (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5432 6zgp:J (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5433 6zgp:K (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5434 6zgp:L (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5435 6zhw:L (2.8) BS06 FE ? GO:0009772 ... P06009 33268896
    5436 6zhw:M (2.8) BS05 FE ? GO:0009772 ... P06010 33268896
    5437 6zi4:L (2.8) BS05 FE ? GO:0009772 ... P06009 33268896
    5438 6zi4:M (2.8) BS04 FE ? GO:0009772 ... P06010 33268896
    5439 6zi5:L (2.8) BS04 FE ? GO:0009772 ... P06009 33268896
    5440 6zi5:M (2.8) BS03 FE ? GO:0009772 ... P06010 33268896
    5441 6zi6:L (2.8) BS06 FE ? GO:0009772 ... P06009 33268896
    5442 6zi6:M (2.8) BS05 FE ? GO:0009772 ... P06010 33268896
    5443 6zi9:L (2.8) BS05 FE ? GO:0009772 ... P06009 33268896
    5444 6zi9:M (2.8) BS04 FE ? GO:0009772 ... P06010 33268896
    5445 6zia:L (2.8) BS06 FE ? GO:0009772 ... P06009 33268896
    5446 6zia:M (2.8) BS05 FE ? GO:0009772 ... P06010 33268896
    5447 6zid:L (2.8) BS05 FE ? GO:0009772 ... P06009 33268896
    5448 6zid:M (2.8) BS04 FE ? GO:0009772 ... P06010 33268896
    5449 6zjk:A (2.0) BS01 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    5450 6zjk:A (2.0) BS02 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    5451 6zjk:B (2.0) BS01 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    5452 6zjk:B (2.0) BS02 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    5453 6zjk:C (2.0) BS01 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    5454 6zjk:C (2.0) BS02 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    5455 6zjk:D (2.0) BS01 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    5456 6zjk:D (2.0) BS02 FE 1.17.4.1 GO:0004748 ... B1KYY8 32883811
    5457 6zk6:A (1.9) BS03 FE 3.1.3.16 GO:0000164 ... P62136 33085143
    5458 6zk6:A (1.9) BS04 FE 3.1.3.16 GO:0000164 ... P62136 33085143
    5459 6zk8:A (1.83) BS01 FE ? GO:0000166 ... A0A452CSW8 32940290
    5460 6zk8:A (1.83) BS03 FE ? GO:0000166 ... A0A452CSW8 32940290
    5461 6zk8:O (1.83) BS01 FE ? GO:0000166 ... A0A452CSW8 32940290
    5462 6zk8:O (1.83) BS02 FE ? GO:0000166 ... A0A452CSW8 32940290
    5463 6zlq:A (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    5464 6zlq:C (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    5465 6zlq:D (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    5466 6zlq:E (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    5467 6zlq:I (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    5468 6zlq:J (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    5469 6zlq:K (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    5470 6zlq:L (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    5471 6zlq:M (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    5472 6zlq:N (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    5473 6zlq:O (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    5474 6zlq:S (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    5475 6zlq:V (3.3) BS01 FE ? GO:0005506 ... P29391 33166133
    5476 6zma:B (2.15) BS01 FE ? GO:0006400 ... A0A179QS89 32785618
    5477 6zma:B (2.15) BS02 FE ? GO:0006400 ... A0A179QS89 32785618
    5478 6zma:C (2.15) BS01 FE ? GO:0006400 ... A0A179QS89 32785618
    5479 6zma:C (2.15) BS02 FE ? GO:0006400 ... A0A179QS89 32785618
    5480 6zmb:B (1.7) BS01 FE ? GO:0006400 ... A0A179QS89 32785618
    5481 6zmb:B (1.7) BS02 FE ? GO:0006400 ... A0A179QS89 32785618
    5482 6zmb:C (1.7) BS01 FE ? GO:0006400 ... A0A179QS89 32785618
    5483 6zmb:C (1.7) BS02 FE ? GO:0006400 ... A0A179QS89 32785618
    5484 6zmc:B (2.5) BS01 FE ? GO:0006400 ... A0A179QS89 32785618
    5485 6zmc:B (2.5) BS02 FE ? GO:0006400 ... A0A179QS89 32785618
    5486 6zmc:C (2.5) BS01 FE ? GO:0006400 ... A0A179QS89 32785618
    5487 6zmc:C (2.5) BS02 FE ? GO:0006400 ... A0A179QS89 32785618
    5488 6zn2:A (4.3) BS03 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    5489 6zn2:C (4.3) BS03 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    5490 6zn2:E (4.3) BS03 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    5491 6zn2:G (4.3) BS03 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    5492 6zvp:A (4.0) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    5493 6zvp:B (4.0) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    5494 6zvp:C (4.0) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    5495 6zvp:D (4.0) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    5496 6zzu:A (3.5) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    5497 6zzu:B (3.5) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    5498 6zzu:C (3.5) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    5499 6zzu:D (3.5) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    5500 7a1f:A (1.8) BS01 FE 3.1.-.-
    3.5.2.6
    N/A Q9H816 34387694
    5501 7a1f:L (1.8) BS01 FE 3.1.-.-
    3.5.2.6
    N/A Q9H816 34387694
    5502 7a2g:A (4.1) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    5503 7a2g:B (4.1) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    5504 7a2g:C (4.1) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    5505 7a2g:D (4.1) BS01 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    5506 7a5y:A (2.29) BS01 FE 3.1.5.- N/A Q9Y3Z3 33988981
    5507 7a5y:B (2.29) BS04 FE 3.1.5.- N/A Q9Y3Z3 33988981
    5508 7a5y:C (2.29) BS04 FE 3.1.5.- N/A Q9Y3Z3 33988981
    5509 7a5y:D (2.29) BS06 FE 3.1.5.- N/A Q9Y3Z3 33988981
    5510 7a5y:E (2.29) BS01 FE 3.1.5.- N/A Q9Y3Z3 33988981
    5511 7a5y:F (2.29) BS04 FE 3.1.5.- N/A Q9Y3Z3 33988981
    5512 7a5y:G (2.29) BS04 FE 3.1.5.- N/A Q9Y3Z3 33988981
    5513 7a5y:H (2.29) BS06 FE 3.1.5.- N/A Q9Y3Z3 33988981
    5514 7a9a:A (1.17) BS01 FE ? GO:0005506 ... I6YFL7 33618255
    5515 7a9a:B (1.17) BS01 FE ? GO:0005506 ... I6YFL7 33618255
    5516 7a9a:C (1.17) BS01 FE ? GO:0005506 ... I6YFL7 33618255
    5517 7a9a:D (1.17) BS01 FE ? GO:0005506 ... I6YFL7 33618255
    5518 7a9a:E (1.17) BS01 FE ? GO:0005506 ... I6YFL7 33618255
    5519 7a9a:F (1.17) BS01 FE ? GO:0005506 ... I6YFL7 33618255
    5520 7a9a:G (1.17) BS01 FE ? GO:0005506 ... I6YFL7 33618255
    5521 7a9a:H (1.17) BS01 FE ? GO:0005506 ... I6YFL7 33618255
    5522 7ai8:A (2.1) BS01 FE 1.17.4.1 GO:0004748 ... P69924 34473086
    5523 7ai8:A (2.1) BS02 FE 1.17.4.1 GO:0004748 ... P69924 34473086
    5524 7ai9:A (2.0) BS01 FE 1.17.4.1 GO:0004748 ... P69924 34473086
    5525 7ai9:A (2.0) BS02 FE 1.17.4.1 GO:0004748 ... P69924 34473086
    5526 7aqq:O (3.06) BS02 FE ? GO:0005515 ... Q9SRR8 33768254
    5527 7aqs:A (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5528 7aqs:A (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5529 7aqs:B (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5530 7aqs:B (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5531 7aqs:C (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5532 7aqs:C (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5533 7aqs:D (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5534 7aqs:D (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5535 7aqs:E (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5536 7aqs:F (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5537 7aqs:F (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5538 7aqs:G (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5539 7aqs:G (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5540 7aqs:H (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5541 7aqs:H (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5542 7aqs:I (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5543 7aqs:J (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5544 7aqs:K (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5545 7aqs:K (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5546 7aqs:L (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5547 7aqs:L (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5548 7aqs:M (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5549 7aqs:M (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5550 7aqs:N (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5551 7aqs:O (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5552 7aqs:O (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5553 7aqs:P (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5554 7aqs:P (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5555 7aqs:Q (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5556 7aqs:R (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5557 7aqs:R (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5558 7aqs:S (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5559 7aqs:S (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5560 7aqs:T (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5561 7aqs:T (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5562 7aqs:U (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5563 7aqs:U (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5564 7aqs:V (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5565 7aqs:V (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5566 7aqs:W (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5567 7aqs:W (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5568 7aqs:X (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5569 7aqs:X (2.8) BS02 FE 1.16.-.- GO:0003677 ... P0ABT2 33775657
    5570 7ar8:O (3.53) BS01 FE ? GO:0005515 ... Q9SRR8 33768254
    5571 7arb:O (3.41) BS01 FE ? GO:0005515 ... Q9SRR8 33768254
    5572 7azq:A (2.0) BS01 FE 1.15.1.1 GO:0004784 ... O30970 N/A
    5573 7azq:E (2.0) BS01 FE 1.15.1.1 GO:0004784 ... O30970 N/A
    5574 7bet:A (2.3) BS01 FE 1.17.4.1 GO:0004748 ... P69924 N/A
    5575 7bet:A (2.3) BS02 FE 1.17.4.1 GO:0004748 ... P69924 N/A
    5576 7bha:A (2.19) BS01 FE ? GO:0005506 ... P69506 33995335
    5577 7bha:A (2.19) BS02 FE ? GO:0005506 ... P69506 33995335
    5578 7bha:B (2.19) BS01 FE ? GO:0005506 ... P69506 33995335
    5579 7bha:B (2.19) BS02 FE ? GO:0005506 ... P69506 33995335
    5580 7bhb:A (2.36) BS01 FE ? GO:0005506 ... P69506 33995335
    5581 7bhb:B (2.36) BS01 FE ? GO:0005506 ... P69506 33995335
    5582 7bhc:A (1.87) BS01 FE ? GO:0005506 ... P69506 33995335
    5583 7bhc:A (1.87) BS02 FE ? GO:0005506 ... P69506 33995335
    5584 7bhc:B (1.87) BS01 FE ? GO:0005506 ... P69506 33995335
    5585 7bhc:B (1.87) BS02 FE ? GO:0005506 ... P69506 33995335
    5586 7c52:L (2.89) BS10 FE ? GO:0005515 ... D2Z0P3 33597527
    5587 7c52:M (2.89) BS07 FE ? GO:0005515 ... A8ASG6 33597527
    5588 7c8z:A (2.6) BS02 FE 1.14.13.172 GO:0004497 ... O52379 33452034
    5589 7c8z:C (2.6) BS02 FE 1.14.13.172 GO:0004497 ... O52379 33452034
    5590 7c8z:E (2.6) BS02 FE 1.14.13.172 GO:0004497 ... O52379 33452034
    5591 7c8z:G (2.6) BS02 FE 1.14.13.172 GO:0004497 ... O52379 33452034
    5592 7c9r:L (2.82) BS06 FE ? GO:0009772 ... G1BIY6 33009385
    5593 7c9r:M (2.82) BS03 FE ? GO:0009772 ... G1BIY7 33009385
    5594 7chi:A (2.502) BS01 FE 1.13.11.20 GO:0005506 ... Q9LXT4 33207269
    5595 7chj:A (2.44) BS01 FE 1.13.11.20 GO:0005506 ... Q9SJI9 33207269
    5596 7chj:B (2.44) BS01 FE 1.13.11.20 GO:0005506 ... Q9SJI9 33207269
    5597 7cpc:A (2.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    5598 7cpc:B (2.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    5599 7cpc:C (2.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176
    5600 7cpc:D (2.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33197176

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218