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BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5201 6txe:G (3.19) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5202 6txe:H (3.19) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5203 6txe:I (3.19) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5204 6txe:J (3.19) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5205 6txe:K (3.19) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5206 6txe:L (3.19) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5207 6txe:M (3.19) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5208 6txe:N (3.19) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5209 6txe:O (3.19) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5210 6txe:P (3.19) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5211 6txf:A (2.25) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5212 6txf:B (2.25) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5213 6txi:A (1.759) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5214 6txi:B (1.759) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5215 6txi:C (1.759) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5216 6txi:D (1.759) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5217 6txi:E (1.759) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5218 6txi:F (1.759) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5219 6txi:G (1.759) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5220 6txi:H (1.759) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5221 6txj:A (2.17) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5222 6txj:B (2.17) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5223 6txj:C (2.17) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5224 6txj:D (2.17) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5225 6txj:E (2.17) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5226 6txj:F (2.17) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5227 6txj:G (2.17) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5228 6txj:H (2.17) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5229 6txk:A (2.359) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5230 6txk:B (2.359) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5231 6txk:C (2.359) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5232 6txk:D (2.359) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5233 6txk:E (2.359) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5234 6txk:F (2.359) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5235 6txk:G (2.359) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5236 6txk:H (2.359) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5237 6txl:A (2.099) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5238 6txl:B (2.099) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5239 6txl:C (2.099) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5240 6txl:D (2.099) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5241 6txl:E (2.099) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5242 6txl:F (2.099) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5243 6txl:G (2.099) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5244 6txl:H (2.099) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 34195748
    5245 6tz6:A (2.55) BS02 FE 3.1.3.16 GO:0016787 ... C4YFI3 31537789
    5246 6tz6:D (2.55) BS02 FE 3.1.3.16 GO:0016787 ... C4YFI3 31537789
    5247 6tz7:A (2.5) BS02 FE 3.1.3.16 GO:0016787 ... Q4WUR1 31537789
    5248 6tz8:A (3.3) BS01 FE 3.1.3.16 GO:0016787 ... O42773 31537789
    5249 6tz8:D (3.3) BS01 FE 3.1.3.16 GO:0016787 ... O42773 31537789
    5250 6u1m:A (1.61) BS01 FE 1.13.11.20 GO:0005506 ... P21816 N/A
    5251 6u4l:A (1.911) BS01 FE 1.13.11.20 GO:0005506 ... P21816 32368901
    5252 6u4s:A (2.49) BS01 FE 1.13.11.20 GO:0005506 ... P21816 32368901
    5253 6u4v:A (2.3) BS01 FE 1.13.11.20 GO:0005506 ... P21816 32368901
    5254 6ug0:B (1.83) BS03 FE 1.18.6.1 GO:0005524 ... P07329 32554596
    5255 6ug0:B (1.83) BS04 FE 1.18.6.1 GO:0005524 ... P07329 32554596
    5256 6ug0:D (1.83) BS01 FE 1.18.6.1 GO:0005524 ... P07329 32554596
    5257 6ug0:D (1.83) BS02 FE 1.18.6.1 GO:0005524 ... P07329 32554596
    5258 6unc:A (2.5) BS02 FE 3.1.4.14 GO:0008770 ... I6YEE1 31886928
    5259 6unc:B (2.5) BS02 FE 3.1.4.14 GO:0008770 ... I6YEE1 31886928
    5260 6unc:C (2.5) BS02 FE 3.1.4.14 GO:0008770 ... I6YEE1 31886928
    5261 6unc:D (2.5) BS02 FE 3.1.4.14 GO:0008770 ... I6YEE1 31886928
    5262 6uoi:A (1.953) BS02 FE 4.2.1.2 GO:0004333 ... E9AE57 31743022
    5263 6uoi:B (1.953) BS02 FE 4.2.1.2 GO:0004333 ... E9AE57 31743022
    5264 6uuq:A (1.849) BS03 FE 3.1.3.16 GO:0016787 ... Q08209 32936779
    5265 6v8i:AG (3.7) BS01 FE ? N/A A4ZFC7 32069326
    5266 6v8i:AH (3.7) BS01 FE ? N/A A4ZFC7 32069326
    5267 6v8i:AI (3.7) BS01 FE ? N/A A4ZFC7 32069326
    5268 6v8i:BG (3.7) BS01 FE ? N/A A4ZFC7 32069326
    5269 6v8i:BH (3.7) BS01 FE ? N/A A4ZFC7 32069326
    5270 6v8i:BI (3.7) BS01 FE ? N/A A4ZFC7 32069326
    5271 6v8i:CG (3.7) BS01 FE ? N/A A4ZFC7 32069326
    5272 6v8i:CH (3.7) BS01 FE ? N/A A4ZFC7 32069326
    5273 6v8i:CI (3.7) BS01 FE ? N/A A4ZFC7 32069326
    5274 6v8i:DG (3.7) BS01 FE ? N/A A4ZFC7 32069326
    5275 6v8i:DH (3.7) BS01 FE ? N/A A4ZFC7 32069326
    5276 6v8i:DI (3.7) BS01 FE ? N/A A4ZFC7 32069326
    5277 6v8i:EG (3.7) BS01 FE ? N/A A4ZFC7 32069326
    5278 6v8i:EH (3.7) BS01 FE ? N/A A4ZFC7 32069326
    5279 6v8i:EI (3.7) BS01 FE ? N/A A4ZFC7 32069326
    5280 6v8i:FG (3.7) BS01 FE ? N/A A4ZFC7 32069326
    5281 6v8i:FH (3.7) BS01 FE ? N/A A4ZFC7 32069326
    5282 6v8i:FI (3.7) BS01 FE ? N/A A4ZFC7 32069326
    5283 6vi8:A (1.95) BS01 FE 1.13.11.6 GO:0000334 ... Q1LCS4 32732435
    5284 6via:A (1.591) BS02 FE 1.13.11.6 GO:0000334 ... Q1LCS4 32732435
    5285 6vj7:A (2.6) BS02 FE 3.1.3.2 GO:0003993 ... P80366 32234228
    5286 6vj7:B (2.6) BS02 FE 3.1.3.2 GO:0003993 ... P80366 32234228
    5287 6vj7:C (2.6) BS02 FE 3.1.3.2 GO:0003993 ... P80366 32234228
    5288 6vj7:D (2.6) BS02 FE 3.1.3.2 GO:0003993 ... P80366 32234228
    5289 6vjr:A (1.55) BS03 FE 5.3.3.3 GO:0000166 ... A9A1Y2 N/A
    5290 6vjr:B (1.55) BS03 FE 5.3.3.3 GO:0000166 ... A9A1Y2 N/A
    5291 6vjr:C (1.55) BS04 FE 5.3.3.3 GO:0000166 ... A9A1Y2 N/A
    5292 6vjr:D (1.55) BS04 FE 5.3.3.3 GO:0000166 ... A9A1Y2 N/A
    5293 6vk4:A (2.35) BS01 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    5294 6vk4:A (2.35) BS02 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    5295 6vk5:A (1.86) BS01 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    5296 6vk5:A (1.86) BS02 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    5297 6vk5:E (1.86) BS01 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    5298 6vk5:E (1.86) BS02 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    5299 6vk6:A (1.52) BS01 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    5300 6vk6:A (1.52) BS02 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    5301 6vk7:A (2.12) BS01 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    5302 6vk7:A (2.12) BS02 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    5303 6vk8:A (2.03) BS01 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    5304 6vk8:A (2.03) BS02 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    5305 6vk8:E (2.03) BS01 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    5306 6vk8:E (2.03) BS02 FE 1.14.13.25 GO:0004497 ... P27353 32692178
    5307 6vp4:A (1.83) BS01 FE 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 33522811
    5308 6vp4:B (1.83) BS01 FE 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 33522811
    5309 6vp4:C (1.83) BS01 FE 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 33522811
    5310 6vp4:D (1.83) BS01 FE 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 33522811
    5311 6vp5:A (1.97) BS01 FE 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 33522811
    5312 6vp5:B (1.97) BS01 FE 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 33522811
    5313 6vp5:C (1.97) BS01 FE 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 33522811
    5314 6vp5:D (1.97) BS01 FE 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 33522811
    5315 6vxt:B (1.74) BS02 FE 1.18.6.1 GO:0005524 ... P07329 32554596
    5316 6vxt:B (1.74) BS03 FE 1.18.6.1 GO:0005524 ... P07329 32554596
    5317 6vxt:D (1.74) BS01 FE 1.18.6.1 GO:0005524 ... P07329 32554596
    5318 6vxt:D (1.74) BS02 FE 1.18.6.1 GO:0005524 ... P07329 32554596
    5319 6wb6:A (2.05) BS01 FE ? GO:0005576 ... P22297 33197096
    5320 6wb6:B (2.05) BS01 FE ? GO:0005576 ... P22297 33197096
    5321 6wf2:A (3.51) BS01 FE 1.14.19.1 GO:0004768 ... P13516 32470559
    5322 6wf2:A (3.51) BS02 FE 1.14.19.1 GO:0004768 ... P13516 32470559
    5323 6wf2:B (3.51) BS01 FE 1.14.19.1 GO:0004768 ... P13516 32470559
    5324 6wf2:B (3.51) BS02 FE 1.14.19.1 GO:0004768 ... P13516 32470559
    5325 6wn3:A (1.86) BS02 FE ? GO:0005506 ... C3RVQ0 32532989
    5326 6wn3:B (1.86) BS02 FE ? GO:0005506 ... C3RVQ0 32532989
    5327 6wn3:C (1.86) BS02 FE ? GO:0005506 ... C3RVQ0 32532989
    5328 6wnb:A (2.1) BS03 FE ? GO:0005506 ... C3RVQ0 32532989
    5329 6wnb:B (2.1) BS03 FE ? GO:0005506 ... C3RVQ0 32532989
    5330 6wnb:C (2.1) BS03 FE ? GO:0005506 ... C3RVQ0 32532989
    5331 6wnc:A (2.2) BS02 FE ? GO:0005506 ... C3RVP5 32532989
    5332 6wnc:B (2.2) BS02 FE ? GO:0005506 ... C3RVP5 32532989
    5333 6wnc:C (2.2) BS02 FE ? GO:0005506 ... C3RVP5 32532989
    5334 6wnd:A (2.18) BS03 FE ? GO:0005506 ... C3RVP5 32532989
    5335 6wnd:B (2.18) BS03 FE ? GO:0005506 ... C3RVP5 32532989
    5336 6wnd:C (2.18) BS03 FE ? GO:0005506 ... C3RVP5 32532989
    5337 6wyf:A (1.25) BS06 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5338 6wyf:A (1.25) BS07 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5339 6wyg:A (2.27) BS01 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5340 6wyg:A (2.27) BS02 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5341 6wyg:B (2.27) BS01 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5342 6wyg:B (2.27) BS02 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5343 6wyg:C (2.27) BS01 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5344 6wyg:C (2.27) BS02 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5345 6wyg:D (2.27) BS01 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5346 6wyg:D (2.27) BS02 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5347 6wyh:A (2.22) BS01 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5348 6wyh:A (2.22) BS02 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5349 6wyh:A (2.22) BS03 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5350 6wyh:B (2.22) BS01 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5351 6wyh:B (2.22) BS02 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5352 6wyh:C (2.22) BS01 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5353 6wyh:C (2.22) BS02 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5354 6wyh:D (2.22) BS01 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5355 6wyh:D (2.22) BS02 FE 1.16.3.1 GO:0004322 ... P02794 33124805
    5356 6xb9:A (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    5357 6xb9:B (2.25) BS02 FE ? GO:0005506 ... C1DN94 33662397
    5358 6xb9:C (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    5359 6xb9:D (2.25) BS02 FE ? GO:0005506 ... C1DN94 33662397
    5360 6xb9:E (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    5361 6xb9:F (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    5362 6xb9:G (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    5363 6xb9:H (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    5364 6xb9:I (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    5365 6xb9:J (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    5366 6xb9:K (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    5367 6xb9:L (2.25) BS01 FE ? GO:0005506 ... C1DN94 33662397
    5368 6xjj:A (2.7) BS01 FE 1.14.-.- GO:0016706 ... B8M9K5 N/A
    5369 6xma:A (1.45) BS01 FE 1.13.11.- GO:0010436 ... G2IQT9 33965373
    5370 6xoj:A (1.45) BS03 FE 1.14.11.78 GO:0016491 ... A0A3B6UEU3 33361191
    5371 6xr0:M (3.064) BS01 FE ? GO:0005576 ... P08582 N/A
    5372 6xu1:A (2.2) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5373 6xu1:B (2.2) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5374 6xu1:C (2.2) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5375 6xu1:D (2.2) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5376 6xu1:E (2.2) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5377 6xu1:F (2.2) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5378 6xu1:G (2.2) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5379 6xu1:H (2.2) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5380 6y0n:A (1.86) BS03 FE 1.14.11.41 GO:0005506 ... Q6WZB0 32939282
    5381 6y0o:A (2.2) BS02 FE 1.21.3.1 GO:0005506 ... P05326 32939282
    5382 6y0p:A (1.98) BS02 FE 1.21.3.1 GO:0005506 ... P05326 34417180
    5383 6y0q:A (1.75) BS02 FE 1.14.11.33 GO:0005515 ... P05050 32939282
    5384 6y12:A (1.7) BS01 FE 1.14.11.41 GO:0005506 ... Q6WZB0 32939282
    5385 6y2n:A (2.4) BS02 FE 1.17.4.1 GO:0004748 ... A4F980 32876583
    5386 6y8s:A (1.629) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5387 6y9c:A (1.8) BS01 FE 1.14.13.239 GO:0005506 ... D0C9N6 36617384
    5388 6y9d:A (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5389 6y9d:B (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5390 6y9d:C (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5391 6y9d:D (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5392 6y9d:E (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5393 6y9d:F (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5394 6y9d:G (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5395 6y9d:H (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5396 6y9d:I (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5397 6y9d:J (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5398 6y9d:K (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5399 6y9d:L (1.97) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5400 6yd0:D (1.95) BS01 FE 1.14.13.25 GO:0004497 ... P27353 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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