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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5001 6qpa:A (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5002 6qpa:B (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5003 6qpa:C (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5004 6qpa:D (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5005 6qpa:E (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5006 6qpa:F (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5007 6qpa:G (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5008 6qpa:H (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5009 6qpa:I (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5010 6qpa:J (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5011 6qpa:K (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5012 6qpa:L (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5013 6qpa:M (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5014 6qpa:N (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5015 6qpa:O (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5016 6qpa:P (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5017 6qpa:Q (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5018 6qpa:R (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5019 6qpa:T (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5020 6qpa:U (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5021 6qpa:V (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5022 6qpa:W (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5023 6qpa:Y (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5024 6qpa:Z (2.1) BS01 FE 1.13.11.55 GO:0016491 ... D0L035 N/A
    5025 6qq5:A (3.9) BS03 FE N/A GO:0004129 ... N/A 31489376
    5026 6qq5:B (3.9) BS03 FE N/A GO:0004129 ... N/A 31489376
    5027 6qq6:A (3.3) BS03 FE N/A GO:0004129 ... N/A 31489376
    5028 6qq6:B (3.3) BS03 FE N/A GO:0004129 ... N/A 31489376
    5029 6qrz:A (3.0) BS02 FE 1.17.4.1 GO:0004748 ... Q4J6V7 31457106
    5030 6r9n:A (2.074) BS01 FE N/A N/A N/A 31270241
    5031 6r9n:A (2.074) BS02 FE N/A N/A N/A 31270241
    5032 6r9n:B (2.074) BS01 FE N/A N/A N/A 31270241
    5033 6r9n:B (2.074) BS02 FE N/A N/A N/A 31270241
    5034 6rxn:A (1.5) BS01 FE ? GO:0005506 ... P04170 2091025
    5035 6s0p:A (1.24) BS01 FE 1.13.11.20 GO:0005506 ... Q9SJI9 32868422
    5036 6s7e:A (1.82) BS01 FE 1.13.11.20 GO:0005506 ... Q9SJI9 32868422
    5037 6scg:A (1.65) BS02 FE 1.1.1.1
    1.2.1.10
    GO:0004022 ... P0A9Q7 32880589
    5038 6scg:B (1.65) BS02 FE 1.1.1.1
    1.2.1.10
    GO:0004022 ... P0A9Q7 32880589
    5039 6sci:A (1.95) BS01 FE 1.1.1.1
    1.2.1.10
    GO:0004022 ... P0A9Q7 32880589
    5040 6sci:B (1.95) BS01 FE 1.1.1.1
    1.2.1.10
    GO:0004022 ... P0A9Q7 32880589
    5041 6son:A (1.6) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    5042 6son:A (1.6) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    5043 6soo:A (1.57) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    5044 6soo:A (1.57) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    5045 6soq:A (1.67) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    5046 6soq:A (1.67) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    5047 6sor:A (1.74) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    5048 6sor:A (1.74) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 31930254
    5049 6soy:C (2.75) BS01 FE ? GO:0005515 ... P02787 31636418
    5050 6soz:C (3.42) BS01 FE ? GO:0005515 ... P02787 31636418
    5051 6suw:A (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5052 6suw:B (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5053 6suw:C (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5054 6suw:D (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5055 6suw:E (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5056 6suw:F (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5057 6suw:G (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5058 6suw:H (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5059 6suw:I (2.66) BS02 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5060 6suw:J (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5061 6suw:K (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5062 6suw:L (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5063 6suw:M (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5064 6suw:N (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5065 6suw:O (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5066 6suw:P (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5067 6suw:Q (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5068 6suw:R (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5069 6suw:S (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5070 6suw:T (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5071 6suw:U (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5072 6suw:V (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5073 6suw:W (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5074 6suw:X (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5075 6suw:Y (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5076 6suw:Z (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5077 6suw:a (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5078 6suw:b (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5079 6suw:c (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5080 6suw:d (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5081 6sv1:A (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5082 6sv1:B (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5083 6sv1:C (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5084 6sv1:D (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5085 6sv1:E (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5086 6sv1:F (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5087 6sv1:G (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5088 6sv1:H (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5089 6sv1:I (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5090 6sv1:J (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5091 6sv1:K (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5092 6sv1:L (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5093 6sv1:M (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5094 6sv1:N (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5095 6sv1:O (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5096 6sv1:P (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5097 6sv1:Q (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5098 6sv1:R (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5099 6sv1:S (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5100 6sv1:T (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5101 6sv1:U (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5102 6sv1:V (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5103 6sv1:W (2.19) BS02 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5104 6sv1:X (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5105 6sv1:Y (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5106 6sv1:Z (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5107 6sv1:a (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5108 6sv1:b (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5109 6sv1:c (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5110 6sv1:d (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    5111 6t8h:A (3.77) BS01 FE 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 32221299
    5112 6tqh:A (3.4) BS03 FE 1.1.1.1
    1.2.1.10
    GO:0004022 ... P0A9Q7 32188856
    5113 6tqh:B (3.4) BS03 FE 1.1.1.1
    1.2.1.10
    GO:0004022 ... P0A9Q7 32188856
    5114 6tqm:A (3.8) BS01 FE 1.1.1.1
    1.2.1.10
    GO:0004022 ... P0A9Q7 32188856
    5115 6tqm:B (3.8) BS01 FE 1.1.1.1
    1.2.1.10
    GO:0004022 ... P0A9Q7 32188856
    5116 6trz:AAA (2.02) BS02 FE ? GO:0005506 ... P02791 32027764
    5117 6trz:AAA (2.02) BS03 FE ? GO:0005506 ... P02791 32027764
    5118 6trz:AAA (2.02) BS04 FE ? GO:0005506 ... P02791 32027764
    5119 6trz:AAA (2.02) BS05 FE ? GO:0005506 ... P02791 32027764
    5120 6ts0:AAA (2.2) BS01 FE ? GO:0005506 ... P02792 32027764
    5121 6ts0:AAA (2.2) BS02 FE ? GO:0005506 ... P02792 32027764
    5122 6ts1:AAA (2.2) BS02 FE ? GO:0005506 ... P02792 32027764
    5123 6ts1:AAA (2.2) BS03 FE ? GO:0005506 ... P02792 32027764
    5124 6ts1:AAA (2.2) BS04 FE ? GO:0005506 ... P02792 32027764
    5125 6ts1:AAA (2.2) BS05 FE ? GO:0005506 ... P02792 32027764
    5126 6ts1:AAA (2.2) BS06 FE ? GO:0005506 ... P02792 32027764
    5127 6tsa:AAA (2.18) BS01 FE ? GO:0005506 ... P02792 32027764
    5128 6tsa:AAA (2.18) BS02 FE ? GO:0005506 ... P02792 32027764
    5129 6tsa:AAA (2.18) BS03 FE ? GO:0005506 ... P02792 32027764
    5130 6tsa:AAA (2.18) BS04 FE ? GO:0005506 ... P02792 32027764
    5131 6tsa:AAA (2.18) BS05 FE ? GO:0005506 ... P02792 32027764
    5132 6tsa:AAA (2.18) BS06 FE ? GO:0005506 ... P02792 32027764
    5133 6tsa:AAA (2.18) BS07 FE ? GO:0005506 ... P02792 32027764
    5134 6tsa:AAA (2.18) BS08 FE ? GO:0005506 ... P02792 32027764
    5135 6tsa:AAA (2.18) BS09 FE ? GO:0005506 ... P02792 32027764
    5136 6tsa:AAA (2.18) BS10 FE ? GO:0005506 ... P02792 32027764
    5137 6tsf:AAA (2.09) BS01 FE ? GO:0005506 ... P02792 32027764
    5138 6tsf:AAA (2.09) BS02 FE ? GO:0005506 ... P02792 32027764
    5139 6tsf:AAA (2.09) BS03 FE ? GO:0005506 ... P02792 32027764
    5140 6tsf:AAA (2.09) BS04 FE ? GO:0005506 ... P02792 32027764
    5141 6tsf:AAA (2.09) BS05 FE ? GO:0005506 ... P02792 32027764
    5142 6tsf:AAA (2.09) BS06 FE ? GO:0005506 ... P02792 32027764
    5143 6tsf:AAA (2.09) BS07 FE ? GO:0005506 ... P02792 32027764
    5144 6tsj:AAA (2.3) BS01 FE ? GO:0005506 ... P02792 32027764
    5145 6tsj:AAA (2.3) BS02 FE ? GO:0005506 ... P02792 32027764
    5146 6tsj:AAA (2.3) BS03 FE ? GO:0005506 ... P02792 32027764
    5147 6tsj:AAA (2.3) BS04 FE ? GO:0005506 ... P02792 32027764
    5148 6tsj:AAA (2.3) BS05 FE ? GO:0005506 ... P02792 32027764
    5149 6tss:AAA (2.18) BS01 FE ? GO:0005506 ... P02791 32027764
    5150 6tss:AAA (2.18) BS02 FE ? GO:0005506 ... P02791 32027764
    5151 6tss:AAA (2.18) BS03 FE ? GO:0005506 ... P02791 32027764
    5152 6tss:AAA (2.18) BS04 FE ? GO:0005506 ... P02791 32027764
    5153 6tss:AAA (2.18) BS05 FE ? GO:0005506 ... P02791 32027764
    5154 6tsx:AAA (2.021) BS02 FE ? GO:0005506 ... P02791 32027764
    5155 6tsx:AAA (2.021) BS03 FE ? GO:0005506 ... P02791 32027764
    5156 6tsx:AAA (2.021) BS04 FE ? GO:0005506 ... P02791 32027764
    5157 6tsx:AAA (2.021) BS05 FE ? GO:0005506 ... P02791 32027764
    5158 6tsx:AAA (2.021) BS06 FE ? GO:0005506 ... P02791 32027764
    5159 6tsx:AAA (2.021) BS07 FE ? GO:0005506 ... P02791 32027764
    5160 6tsx:AAA (2.021) BS08 FE ? GO:0005506 ... P02791 32027764
    5161 6tx0:A (2.01) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5162 6tx0:B (2.01) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5163 6txa:A (2.853) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5164 6txa:B (2.853) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5165 6txa:C (2.853) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5166 6txa:D (2.853) BS06 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5167 6txa:E (2.853) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5168 6txa:F (2.853) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5169 6txa:G (2.853) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5170 6txa:H (2.853) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5171 6txa:I (2.853) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5172 6txa:J (2.853) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5173 6txa:K (2.853) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5174 6txa:L (2.853) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5175 6txa:M (2.853) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5176 6txa:N (2.853) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5177 6txa:O (2.853) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5178 6txa:P (2.853) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5179 6txc:A (2.84) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5180 6txc:B (2.84) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5181 6txc:C (2.84) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5182 6txc:D (2.84) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5183 6txc:E (2.84) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5184 6txc:F (2.84) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5185 6txc:G (2.84) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5186 6txc:H (2.84) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5187 6txc:I (2.84) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5188 6txc:J (2.84) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5189 6txc:K (2.84) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5190 6txc:L (2.84) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5191 6txc:M (2.84) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5192 6txc:N (2.84) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5193 6txc:O (2.84) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5194 6txc:P (2.84) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5195 6txe:A (3.19) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5196 6txe:B (3.19) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5197 6txe:C (3.19) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5198 6txe:D (3.19) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5199 6txe:E (3.19) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    5200 6txe:F (3.19) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218