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BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4601 6h6t:D (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4602 6h6t:E (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4603 6h6t:F (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4604 6h6t:G (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4605 6h6t:H (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4606 6h6t:I (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4607 6h6t:J (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4608 6h6t:K (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4609 6h6t:L (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4610 6h6u:A (2.0) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4611 6h6u:A (2.0) BS02 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4612 6h6u:B (2.0) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4613 6h6u:B (2.0) BS02 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4614 6h6u:C (2.0) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4615 6h6u:C (2.0) BS02 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4616 6h6u:D (2.0) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4617 6h6u:D (2.0) BS02 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4618 6h6u:E (2.0) BS02 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4619 6h6u:E (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4620 6h6u:F (2.0) BS02 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4621 6h6u:F (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4622 6hhb:A (1.8) BS01 FE ? N/A E0SCP7 31649262
    4623 6hhb:B (1.8) BS01 FE ? N/A E0SCP7 31649262
    4624 6hhb:C (1.8) BS01 FE ? N/A E0SCP7 31649262
    4625 6hhb:D (1.8) BS01 FE ? N/A E0SCP7 31649262
    4626 6hmf:A (2.6) BS01 FE 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 30657780
    4627 6hmf:B (2.6) BS01 FE 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 30657780
    4628 6hpo:A (1.67) BS01 FE 1.14.16.1 GO:0004497 ... P00439 31118288
    4629 6hwr:A (1.95) BS02 FE 3.1.3.2 GO:0003993 ... P80366 30719821
    4630 6hwr:B (1.95) BS02 FE 3.1.3.2 GO:0003993 ... P80366 30719821
    4631 6hwr:C (1.95) BS02 FE 3.1.3.2 GO:0003993 ... P80366 30719821
    4632 6hwr:D (1.95) BS02 FE 3.1.3.2 GO:0003993 ... P80366 30719821
    4633 6i0r:A (2.1) BS01 FE 2.5.1.72 GO:0005737 ... Q9X1X7 30855610
    4634 6i8a:A (2.652) BS06 FE 2.7.7.7
    3.1.11.-
    GO:0000166 ... P21951 30670696
    4635 6i8a:B (2.652) BS08 FE 2.7.7.7
    3.1.11.-
    GO:0000166 ... P21951 30670696
    4636 6i90:A (1.803) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 31591267
    4637 6i93:A (2.101) BS01 FE 1.17.4.1 GO:0009263 ... Q5KW80 31591267
    4638 6i93:A (2.101) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 31591267
    4639 6ick:A (1.952) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    4640 6ick:B (1.952) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    4641 6ick:C (1.952) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    4642 6icl:A (2.1) BS02 FE 1.14.13.179 GO:0009820 ... H9N290 31412262
    4643 6icm:A (2.961) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    4644 6icm:B (2.961) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    4645 6icm:C (2.961) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    4646 6icp:A (2.2) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    4647 6icp:B (2.2) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    4648 6icp:C (2.2) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    4649 6icq:A (1.9) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    4650 6icq:B (1.9) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    4651 6icq:C (1.9) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    4652 6ipp:A (2.699) BS01 FE 1.16.3.1 GO:0004322 ... P02794 30770832
    4653 6ivy:A (2.0) BS01 FE ? GO:0005615 ... Q9HVA8 31475514
    4654 6ivy:B (2.0) BS01 FE ? GO:0005615 ... Q9HVA8 31475514
    4655 6j26:A (2.0) BS03 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 31162806
    4656 6j26:B (2.0) BS01 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 31162806
    4657 6j27:A (1.66) BS01 FE 2.5.1.128 GO:0005737 ... Q72L89 31162806
    4658 6j27:B (1.66) BS01 FE 2.5.1.128 GO:0005737 ... Q72L89 31162806
    4659 6j27:C (1.66) BS01 FE 2.5.1.128 GO:0005737 ... Q72L89 31162806
    4660 6j27:D (1.66) BS01 FE 2.5.1.128 GO:0005737 ... Q72L89 31162806
    4661 6j28:A (1.9) BS03 FE 2.5.1.128 GO:0005737 ... Q72L89 31162806
    4662 6j28:B (1.9) BS03 FE 2.5.1.128 GO:0005737 ... Q72L89 31162806
    4663 6j28:C (1.9) BS01 FE 2.5.1.128 GO:0005737 ... Q72L89 31162806
    4664 6j28:D (1.9) BS01 FE 2.5.1.128 GO:0005737 ... Q72L89 31162806
    4665 6j63:A (2.624) BS01 FE 1.13.11.27 GO:0003868 ... P93836 30632699
    4666 6j63:B (2.624) BS01 FE 1.13.11.27 GO:0003868 ... P93836 30632699
    4667 6j63:C (2.624) BS01 FE 1.13.11.27 GO:0003868 ... P93836 30632699
    4668 6j63:D (2.624) BS01 FE 1.13.11.27 GO:0003868 ... P93836 30632699
    4669 6jas:A (2.501) BS01 FE ? GO:0005515 ... P02787 N/A
    4670 6jov:A (1.941) BS01 FE N/A GO:0004784 ... N/A N/A
    4671 6jov:B (1.941) BS01 FE N/A GO:0004784 ... N/A N/A
    4672 6jov:C (1.941) BS01 FE N/A GO:0004784 ... N/A N/A
    4673 6jov:D (1.941) BS01 FE N/A GO:0004784 ... N/A N/A
    4674 6jss:A (2.16) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    4675 6jss:B (2.16) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    4676 6jss:C (2.16) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    4677 6jss:D (2.16) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    4678 6jst:A (1.726) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    4679 6jst:B (1.726) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    4680 6jst:C (1.726) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    4681 6jst:D (1.726) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    4682 6jsu:A (1.8) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    4683 6jsu:B (1.8) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    4684 6jzm:B (1.88) BS01 FE 1.14.11.81 N/A Q5AR53 N/A
    4685 6k0e:B (1.707) BS01 FE 1.14.11.81 N/A Q5AR53 N/A
    4686 6k0f:B (1.634) BS01 FE 1.14.11.81 N/A Q5AR53 N/A
    4687 6k30:B (2.684) BS01 FE 1.14.11.81 N/A Q5AR53 N/A
    4688 6k5z:A (2.33) BS03 FE ? GO:0000166 ... Q8ZXN7 31693208
    4689 6k5z:B (2.33) BS03 FE ? GO:0000166 ... Q8ZXN7 31693208
    4690 6k9z:A (1.78) BS03 FE ? GO:0000166 ... Q8ZXN7 31693208
    4691 6k9z:B (1.78) BS04 FE ? GO:0000166 ... Q8ZXN7 31693208
    4692 6kd9:B (2.44) BS01 FE 1.14.11.81 N/A Q5AR53 N/A
    4693 6kd9:F (2.44) BS01 FE 1.14.11.81 N/A Q5AR53 N/A
    4694 6ke2:A (1.798) BS01 FE 1.16.3.1 GO:0004322 ... P02794 31556881
    4695 6ke2:A (1.798) BS02 FE 1.16.3.1 GO:0004322 ... P02794 31556881
    4696 6ke4:A (2.3) BS01 FE 1.16.3.1 GO:0004322 ... P02794 31556881
    4697 6kh0:A (2.0) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 31820500
    4698 6kh0:B (2.0) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 31820500
    4699 6kh0:C (2.0) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 31820500
    4700 6kh0:D (2.0) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 31820500
    4701 6kh0:E (2.0) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 31820500
    4702 6kh0:F (2.0) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 31820500
    4703 6kh1:A (2.4) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 31820500
    4704 6kh3:A (2.3) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 31820500
    4705 6kh4:A (2.302) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 31820500
    4706 6kh5:A (2.294) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 31820500
    4707 6knb:A (6.9) BS01 FE 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q5JET1 33115459
    4708 6knc:A (9.3) BS01 FE 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q5JET1 33115459
    4709 6l1x:A (3.15) BS03 FE 1.7.99.7 GO:0004129 ... C6S880 32431824
    4710 6l3h:A (3.06) BS03 FE 1.7.99.7 GO:0004129 ... C6S880 32431824
    4711 6l3h:B (3.06) BS03 FE 1.7.99.7 GO:0004129 ... C6S880 32431824
    4712 6l3w:A (2.6) BS01 FE N/A GO:0004462 ... N/A 31771973
    4713 6l55:A (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    4714 6l55:B (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    4715 6l55:C (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    4716 6l55:D (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    4717 6l55:E (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    4718 6l55:F (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    4719 6l55:G (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    4720 6l55:H (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    4721 6l55:I (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    4722 6l55:J (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    4723 6l55:K (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    4724 6l55:L (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    4725 6lbc:A (1.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33548881
    4726 6lbc:B (1.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33548881
    4727 6lbc:C (1.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33548881
    4728 6lbc:D (1.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33548881
    4729 6lbc:E (1.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33548881
    4730 6lbc:F (1.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33548881
    4731 6lbd:A (1.386) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33548881
    4732 6ljg:A (1.799) BS01 FE 1.16.3.1 GO:0004322 ... Q70MM3 N/A
    4733 6lk9:A (2.099) BS01 FE N/A GO:0006826 ... N/A N/A
    4734 6lkp:A (2.9) BS01 FE N/A GO:0008199 ... N/A 32170832
    4735 6lkp:B (2.9) BS02 FE N/A GO:0008199 ... N/A 32170832
    4736 6lkp:C (2.9) BS02 FE N/A GO:0008199 ... N/A 32170832
    4737 6lkp:D (2.9) BS02 FE N/A GO:0008199 ... N/A 32170832
    4738 6lkp:E (2.9) BS02 FE N/A GO:0008199 ... N/A 32170832
    4739 6lkp:F (2.9) BS02 FE N/A GO:0008199 ... N/A 32170832
    4740 6ll4:A (2.2) BS02 FE ? GO:0046872 ... Q84II6 N/A
    4741 6ll4:B (2.2) BS02 FE ? GO:0046872 ... Q84II6 N/A
    4742 6ll4:C (2.2) BS02 FE ? GO:0046872 ... Q84II6 N/A
    4743 6lnh:A (2.34) BS01 FE 1.14.11.45 GO:0008198 ... E2GIN1 N/A
    4744 6lnh:B (2.34) BS01 FE 1.14.11.45 GO:0008198 ... E2GIN1 N/A
    4745 6lnh:C (2.34) BS01 FE 1.14.11.45 GO:0008198 ... E2GIN1 N/A
    4746 6lnh:D (2.34) BS01 FE 1.14.11.45 GO:0008198 ... E2GIN1 N/A
    4747 6lp5:A (1.98) BS01 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    4748 6lp5:A (1.98) BS02 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    4749 6lp5:B (1.98) BS01 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    4750 6lp5:B (1.98) BS02 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    4751 6lp5:C (1.98) BS01 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    4752 6lp5:C (1.98) BS02 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    4753 6lp5:D (1.98) BS01 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    4754 6lp5:D (1.98) BS02 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    4755 6lp5:E (1.98) BS01 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    4756 6lp5:E (1.98) BS02 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    4757 6lp5:F (1.98) BS01 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    4758 6lp5:F (1.98) BS02 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    4759 6lru:A (2.4) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 N/A
    4760 6lrx:A (1.702) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 N/A
    4761 6ls0:A (1.87) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4762 6ls0:A (1.87) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4763 6ls0:B (1.87) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4764 6ls0:B (1.87) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4765 6ls0:C (1.87) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4766 6ls0:H (1.87) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4767 6ls0:H (1.87) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4768 6ls3:A (2.815) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4769 6ls3:A (2.815) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4770 6ls3:B (2.815) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4771 6ls3:B (2.815) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4772 6ls3:C (2.815) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4773 6ls3:C (2.815) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4774 6ls3:D (2.815) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4775 6ls3:D (2.815) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4776 6ls3:E (2.815) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4777 6ls3:E (2.815) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4778 6ls3:F (2.815) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4779 6ls3:F (2.815) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4780 6ls3:G (2.815) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4781 6ls3:G (2.815) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4782 6ls3:H (2.815) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    4783 6lsv:A (2.651) BS03 FE 1.14.11.- GO:0005506 ... Q9FFF6 33516967
    4784 6lsv:B (2.651) BS03 FE 1.14.11.- GO:0005506 ... Q9FFF6 33516967
    4785 6lvb:A (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    4786 6lvb:C (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    4787 6lvb:E (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    4788 6lvb:G (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    4789 6lvc:A (3.0) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    4790 6lvc:C (3.0) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    4791 6lvv:A (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    4792 6lvv:C (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    4793 6lvv:E (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    4794 6lvv:G (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    4795 6lvv:I (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    4796 6lvv:K (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    4797 6lvv:M (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    4798 6lvv:O (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    4799 6m1w:B (2.75) BS01 FE ? GO:0005737 ... A0A402C2Q3 33398074
    4800 6m1w:B (2.75) BS02 FE ? GO:0005737 ... A0A402C2Q3 33398074

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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