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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4401 5zm3:A (2.25) BS01 FE 1.14.11.- GO:0016114 ... A0A097ZPD5 29972643
    4402 5zm3:B (2.25) BS01 FE 1.14.11.- GO:0016114 ... A0A097ZPD5 29972643
    4403 5zm3:C (2.25) BS01 FE 1.14.11.- GO:0016114 ... A0A097ZPD5 29972643
    4404 5zm3:D (2.25) BS01 FE 1.14.11.- GO:0016114 ... A0A097ZPD5 29972643
    4405 5zm4:A (1.95) BS01 FE 1.14.11.- GO:0016114 ... A0A097ZPD5 29972643
    4406 5zm4:B (1.95) BS01 FE 1.14.11.- GO:0016114 ... A0A097ZPD5 29972643
    4407 5zm4:C (1.95) BS01 FE 1.14.11.- GO:0016114 ... A0A097ZPD5 29972643
    4408 5zm4:D (1.95) BS01 FE 1.14.11.- GO:0016114 ... A0A097ZPD5 29972643
    4409 5znh:A (2.4) BS01 FE 1.13.11.2 GO:0003824 ... A0A4V8GZK8 N/A
    4410 5zsx:A (2.2) BS02 FE 1.13.11.2 GO:0003824 ... A0A4V8GZK8 N/A
    4411 5zsz:A (2.4) BS02 FE 1.13.11.2 GO:0003824 ... A0A509GUM5 N/A
    4412 5zta:A (3.07) BS01 FE 4.99.1.4 GO:0006779 ... O34632 N/A
    4413 5zta:B (3.07) BS01 FE 4.99.1.4 GO:0006779 ... O34632 N/A
    4414 6akz:A (1.69) BS01 FE ? GO:0003674 ... A0A1D8PEJ2 31743702
    4415 6b8f:A (1.06) BS01 FE 1.16.3.1 GO:0004322 ... P02794 29720635
    4416 6b8f:A (1.06) BS02 FE 1.16.3.1 GO:0004322 ... P02794 29720635
    4417 6b8g:A (1.13) BS01 FE 1.16.3.1 GO:0004322 ... P02794 29720635
    4418 6b8g:A (1.13) BS02 FE 1.16.3.1 GO:0004322 ... P02794 29720635
    4419 6b9r:A (1.802) BS01 FE N/A GO:0003677 ... N/A 29217579
    4420 6b9r:B (1.802) BS01 FE N/A GO:0003677 ... N/A 29217579
    4421 6b9r:C (1.802) BS02 FE N/A GO:0003677 ... N/A 29217579
    4422 6b9r:D (1.802) BS02 FE N/A GO:0003677 ... N/A 29217579
    4423 6b9s:A (2.373) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    4424 6b9s:C (2.373) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    4425 6b9s:D (2.373) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    4426 6b9s:E (2.373) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    4427 6b9s:G (2.373) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    4428 6b9t:A (2.35) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    4429 6b9t:B (2.35) BS02 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    4430 6b9t:C (2.35) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    4431 6b9t:D (2.35) BS02 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    4432 6b9t:E (2.35) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    4433 6b9t:F (2.35) BS02 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    4434 6b9t:G (2.35) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    4435 6b9t:H (2.35) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    4436 6bbl:B (1.68) BS02 FE 1.18.6.1 GO:0005524 ... P07329 29275221
    4437 6bbl:B (1.68) BS03 FE 1.18.6.1 GO:0005524 ... P07329 29275221
    4438 6bbl:D (1.68) BS01 FE 1.18.6.1 GO:0005524 ... P07329 29275221
    4439 6bbl:D (1.68) BS02 FE 1.18.6.1 GO:0005524 ... P07329 29275221
    4440 6bdj:A (2.15) BS01 FE ? GO:0003824 ... T1K8P1 30529144
    4441 6bdj:U (2.15) BS01 FE ? GO:0003824 ... T1K8P1 30529144
    4442 6bpr:A (1.96) BS01 FE 1.13.11.20 GO:0000097 ... Q16878 30946568
    4443 6c66:G (3.66) BS02 FE ? GO:0000027 ... Q47PJ0 29880725
    4444 6c66:G (3.66) BS03 FE ? GO:0000027 ... Q47PJ0 29880725
    4445 6c75:A (2.4) BS01 FE ? GO:0000166 ... A0A0Q2QQL1 30950821
    4446 6c76:A (2.1) BS01 FE ? GO:0000166 ... A0A0Q2QQL1 30950821
    4447 6cdk:B (2.1) BS02 FE 1.18.6.1 GO:0005524 ... P07329 29720402
    4448 6cdk:B (2.1) BS03 FE 1.18.6.1 GO:0005524 ... P07329 29720402
    4449 6cdk:D (2.1) BS01 FE 1.18.6.1 GO:0005524 ... P07329 29720402
    4450 6cdk:D (2.1) BS02 FE 1.18.6.1 GO:0005524 ... P07329 29720402
    4451 6cl5:A (2.324) BS01 FE ? N/A Q9KW03 30110933
    4452 6cl5:B (2.324) BS01 FE ? N/A Q9KW03 30110933
    4453 6cl5:C (2.324) BS01 FE ? N/A Q9KW03 30110933
    4454 6cl5:D (2.324) BS01 FE ? N/A Q9KW03 30110933
    4455 6cl5:E (2.324) BS01 FE ? N/A Q9KW03 30110933
    4456 6cl5:F (2.324) BS01 FE ? N/A Q9KW03 30110933
    4457 6cl6:A (1.898) BS01 FE ? N/A G3XD71 30110933
    4458 6cl6:B (1.898) BS01 FE ? N/A G3XD71 30110933
    4459 6cl6:C (1.898) BS01 FE ? N/A G3XD71 30110933
    4460 6cl6:D (1.898) BS01 FE ? N/A G3XD71 30110933
    4461 6cl6:E (1.898) BS01 FE ? N/A G3XD71 30110933
    4462 6cl6:F (1.898) BS01 FE ? N/A G3XD71 30110933
    4463 6ctc:A (2.6) BS01 FE ? GO:0005515 ... P02787 30311019
    4464 6ctc:A (2.6) BS02 FE ? GO:0005515 ... P02787 30311019
    4465 6cyp:A (2.0) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    4466 6cyp:B (2.0) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    4467 6cyp:C (2.0) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    4468 6cyp:D (2.0) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    4469 6cyp:E (2.0) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    4470 6cyp:F (2.0) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    4471 6cys:A (1.85) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    4472 6cys:B (1.85) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    4473 6cys:C (1.85) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    4474 6cys:D (1.85) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    4475 6d03:C (3.68) BS01 FE ? GO:0005576 ... P02787 29950717
    4476 6d03:C (3.68) BS03 FE ? GO:0005576 ... P02787 29950717
    4477 6d03:D (3.68) BS01 FE ? GO:0005576 ... P02787 29950717
    4478 6d03:D (3.68) BS03 FE ? GO:0005576 ... P02787 29950717
    4479 6d04:C (3.74) BS01 FE ? GO:0005576 ... P02787 29950717
    4480 6d04:C (3.74) BS03 FE ? GO:0005576 ... P02787 29950717
    4481 6d04:D (3.74) BS01 FE ? GO:0005576 ... P02787 29950717
    4482 6d04:D (3.74) BS03 FE ? GO:0005576 ... P02787 29950717
    4483 6d05:C (3.8) BS01 FE ? GO:0005576 ... P02787 29950717
    4484 6d05:C (3.8) BS03 FE ? GO:0005576 ... P02787 29950717
    4485 6d05:D (3.8) BS01 FE ? GO:0005576 ... P02787 29950717
    4486 6d05:D (3.8) BS03 FE ? GO:0005576 ... P02787 29950717
    4487 6d7k:A (2.6) BS01 FE ? GO:0004497 ... Q27RN7 31616787
    4488 6d7k:A (2.6) BS02 FE ? GO:0004497 ... Q27RN7 31616787
    4489 6d7k:E (2.6) BS01 FE ? GO:0004497 ... Q27RN7 31616787
    4490 6d7k:E (2.6) BS02 FE ? GO:0004497 ... Q27RN7 31616787
    4491 6d9f:A (2.03) BS01 FE ? GO:0016491 ... E4N6B3 32935984
    4492 6d9f:A (2.03) BS02 FE ? GO:0016491 ... E4N6B3 32935984
    4493 6d9f:B (2.03) BS01 FE ? GO:0016491 ... E4N6B3 32935984
    4494 6d9f:B (2.03) BS02 FE ? GO:0016491 ... E4N6B3 32935984
    4495 6dy4:A (1.9) BS02 FE ? GO:0005506 ... P0ABE7 30778140
    4496 6dy4:D (1.9) BS01 FE ? GO:0005506 ... P0ABE7 30778140
    4497 6dy4:D (1.9) BS02 FE ? GO:0005506 ... P0ABE7 30778140
    4498 6dye:A (2.25) BS01 FE ? GO:0005506 ... P0ABE7 30778140
    4499 6dye:B (2.25) BS01 FE ? GO:0005506 ... P0ABE7 30778140
    4500 6dyg:A (1.49) BS02 FE ? GO:0005506 ... P0ABE7 30778140
    4501 6dyg:B (1.49) BS01 FE ? GO:0005506 ... P0ABE7 30778140
    4502 6dyj:A (1.96) BS01 FE ? GO:0005506 ... P0ABE7 30778140
    4503 6dyj:C (1.96) BS01 FE ? GO:0005506 ... P0ABE7 30778140
    4504 6dyj:E (1.96) BS01 FE ? GO:0005506 ... P0ABE7 30778140
    4505 6dyj:G (1.96) BS01 FE ? GO:0005506 ... P0ABE7 30778140
    4506 6dyk:A (1.955) BS01 FE ? GO:0005506 ... P0ABE7 30778140
    4507 6dyk:C (1.955) BS01 FE ? GO:0005506 ... P0ABE7 30778140
    4508 6dyk:E (1.955) BS01 FE ? GO:0005506 ... P0ABE7 30778140
    4509 6dyk:G (1.955) BS01 FE ? GO:0005506 ... P0ABE7 30778140
    4510 6et5:L (2.87) BS05 FE ? GO:0009772 ... P06009 29618818
    4511 6et5:M (2.87) BS03 FE ? GO:0009772 ... P06010 29618818
    4512 6etb:A (1.905) BS02 FE ? GO:0005506 ... Q46877 N/A
    4513 6etb:A (1.905) BS03 FE ? GO:0005506 ... Q46877 N/A
    4514 6etb:B (1.905) BS02 FE ? GO:0005506 ... Q46877 N/A
    4515 6etb:B (1.905) BS03 FE ? GO:0005506 ... Q46877 N/A
    4516 6euo:A (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    4517 6euo:B (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    4518 6euo:C (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    4519 6euo:D (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    4520 6eur:A (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    4521 6eur:B (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    4522 6eur:C (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    4523 6eur:D (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    4524 6ex3:A (2.2) BS01 FE 1.15.1.1 GO:0004784 ... P0A0J3 N/A
    4525 6ex3:B (2.2) BS01 FE 1.15.1.1 GO:0004784 ... P0A0J3 N/A
    4526 6ex3:C (2.2) BS01 FE 1.15.1.1 GO:0004784 ... P0A0J3 N/A
    4527 6ex3:D (2.2) BS01 FE 1.15.1.1 GO:0004784 ... P0A0J3 N/A
    4528 6ex4:A (2.4) BS01 FE 1.15.1.1 GO:0004784 ... Q2G261 N/A
    4529 6ex4:B (2.4) BS01 FE 1.15.1.1 GO:0004784 ... Q2G261 N/A
    4530 6exf:A (1.95) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    4531 6exf:B (1.95) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    4532 6exf:C (1.95) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    4533 6exf:D (1.95) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    4534 6exh:A (2.6) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    4535 6exh:B (2.6) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    4536 6exh:C (2.6) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    4537 6exh:D (2.6) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    4538 6f65:A (1.948) BS01 FE 1.17.4.1 GO:0009263 ... Q5KW80 30689052
    4539 6f6c:A (1.766) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    4540 6f6c:B (1.766) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    4541 6f6d:A (1.81811) BS02 FE 1.14.11.68 N/A O15054 29220567
    4542 6f6f:A (1.788) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    4543 6f6h:A (1.764) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    4544 6f6h:B (1.764) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    4545 6f6j:A (2.0) BS01 FE 1.14.11.- GO:0005506 ... C7QJ42 30410048
    4546 6f6j:B (2.0) BS01 FE 1.14.11.- GO:0005506 ... C7QJ42 30410048
    4547 6f6j:C (2.0) BS01 FE 1.14.11.- GO:0005506 ... C7QJ42 30410048
    4548 6f6j:D (2.0) BS01 FE 1.14.11.- GO:0005506 ... C7QJ42 30410048
    4549 6f6l:A (1.904) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 30689052
    4550 6f6l:B (1.904) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 30689052
    4551 6frm:C (2.2) BS04 FE ? GO:0000166 ... A0A452CSW8 29806881
    4552 6frm:D (2.2) BS03 FE ? GO:0000166 ... A0A452CSW8 29806881
    4553 6frm:G (2.2) BS04 FE ? GO:0000166 ... A0A452CSW8 29806881
    4554 6frm:H (2.2) BS04 FE ? GO:0000166 ... A0A452CSW8 29806881
    4555 6fwf:A (4.2) BS04 FE 1.7.99.7 GO:0004129 ... C6S880 29483528
    4556 6fwk:A (2.503) BS06 FE 2.7.7.7
    3.1.11.-
    GO:0000166 ... P21951 30670696
    4557 6fwk:B (2.503) BS09 FE 2.7.7.7
    3.1.11.-
    GO:0000166 ... P21951 30670696
    4558 6g0a:A (2.62) BS06 FE 2.7.7.7
    3.1.11.-
    GO:0000166 ... P21951 30670696
    4559 6g0i:A (2.0) BS01 FE 3.1.3.16 GO:0000164 ... P62136 30403291
    4560 6g0i:A (2.0) BS02 FE 3.1.3.16 GO:0000164 ... P62136 30403291
    4561 6g0j:A (2.1) BS01 FE 3.1.3.16 GO:0000164 ... P62136 30403291
    4562 6g0j:A (2.1) BS02 FE 3.1.3.16 GO:0000164 ... P62136 30403291
    4563 6g46:A (2.4) BS02 FE 3.1.3.2 GO:0003993 ... P80366 30107365
    4564 6g46:B (2.4) BS02 FE 3.1.3.2 GO:0003993 ... P80366 30107365
    4565 6g46:C (2.4) BS02 FE 3.1.3.2 GO:0003993 ... P80366 30107365
    4566 6g46:D (2.4) BS02 FE 3.1.3.2 GO:0003993 ... P80366 30107365
    4567 6g7n:A (1.1) BS03 FE ? GO:0006826 ... Q10Z45 30217820
    4568 6g7n:B (1.1) BS03 FE ? GO:0006826 ... Q10Z45 30217820
    4569 6g7p:A (1.5) BS01 FE ? GO:0006826 ... Q10Z45 30217820
    4570 6g7p:B (1.5) BS01 FE ? GO:0006826 ... Q10Z45 30217820
    4571 6gdy:A (2.04) BS01 FE 1.14.11.- N/A Q6NYC1 31147442
    4572 6gdy:B (2.04) BS01 FE 1.14.11.- N/A Q6NYC1 31147442
    4573 6gem:A (3.462) BS01 FE ? GO:0046872 ... A0A075X7F9 N/A
    4574 6gem:B (3.462) BS01 FE ? GO:0046872 ... A0A075X7F9 N/A
    4575 6gem:C (3.462) BS01 FE ? GO:0046872 ... A0A075X7F9 N/A
    4576 6gem:D (3.462) BS01 FE ? GO:0046872 ... A0A075X7F9 N/A
    4577 6git:A (1.418) BS01 FE 3.1.3.2 GO:0003993 ... F6MIW5 35529950
    4578 6git:A (1.418) BS02 FE 3.1.3.2 GO:0003993 ... F6MIW5 35529950
    4579 6giz:A (1.54) BS01 FE 3.1.3.2 GO:0003993 ... F6MIW5 35529950
    4580 6giz:A (1.54) BS02 FE 3.1.3.2 GO:0003993 ... F6MIW5 35529950
    4581 6gj2:A (1.68) BS01 FE 3.1.3.2 GO:0003993 ... F6MIW5 35529950
    4582 6gj2:A (1.68) BS02 FE 3.1.3.2 GO:0003993 ... F6MIW5 35529950
    4583 6gj9:A (1.76) BS01 FE 3.1.3.2 GO:0003993 ... F6MIW5 N/A
    4584 6gj9:A (1.76) BS02 FE 3.1.3.2 GO:0003993 ... F6MIW5 N/A
    4585 6gja:A (1.5) BS01 FE 3.1.3.2 GO:0003993 ... F6MIW5 35529950
    4586 6gja:A (1.5) BS02 FE 3.1.3.2 GO:0003993 ... F6MIW5 35529950
    4587 6gka:A (1.76) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 30659147
    4588 6gka:A (1.76) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 30659147
    4589 6gkb:A (1.9) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 30659147
    4590 6gkc:A (1.97) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 30659147
    4591 6gkc:A (1.97) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 30659147
    4592 6gq8:A (1.9) BS01 FE ? GO:0005506 ... Q74MF3 29939726
    4593 6gq8:B (1.9) BS01 FE ? GO:0005506 ... Q74MF3 29939726
    4594 6gq8:C (1.9) BS01 FE ? GO:0005506 ... Q74MF3 29939726
    4595 6gq8:D (1.9) BS01 FE ? GO:0005506 ... Q74MF3 29939726
    4596 6h1h:A (1.54) BS01 FE 1.13.11.24 GO:0003712 ... O00625 30613326
    4597 6h1i:A (1.69) BS01 FE 1.13.11.24 GO:0003712 ... O00625 30613326
    4598 6h6t:A (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4599 6h6t:B (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    4600 6h6t:C (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218