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BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4201 5odh:G (2.2) BS07 FE 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    4202 5odh:L (2.2) BS02 FE 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    4203 5odi:F (2.4) BS02 FE 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    4204 5odi:L (2.4) BS02 FE 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    4205 5odq:F (2.15) BS02 FE 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    4206 5odq:G (2.15) BS02 FE 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    4207 5odq:L (2.15) BS02 FE 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    4208 5odr:F (2.2) BS02 FE 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    4209 5odr:G (2.2) BS01 FE 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    4210 5odr:L (2.2) BS03 FE 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    4211 5ok4:A (1.29) BS01 FE 1.12.98.2 GO:0006730 ... P32440 29462510
    4212 5ok4:A (1.29) BS02 FE 1.12.98.2 GO:0006730 ... P32440 29462510
    4213 5ome:A (0.747) BS01 FE ? GO:0005506 ... P24297 N/A
    4214 5omj:A (2.005) BS01 FE 1.17.4.1 GO:0009263 ... Q5KW80 29268610
    4215 5omj:A (2.005) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 29268610
    4216 5omk:A (1.704) BS01 FE 1.17.4.1 GO:0009263 ... Q5KW80 29268610
    4217 5omk:A (1.704) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 29268610
    4218 5onm:A (1.52) BS01 FE 4.2.1.108 GO:0016829 ... A0A1R1AV52 30674920
    4219 5onn:A (1.4) BS01 FE 4.2.1.108 GO:0016829 ... A0A1R1AV52 30674920
    4220 5ono:A (2.5) BS01 FE 4.2.1.108 GO:0016829 ... A0A1R1AV52 30674920
    4221 5oy3:A (2.136) BS02 FE 1.14.11.68 N/A O15054 29220567
    4222 5pah:A (2.1) BS01 FE 1.14.16.1 GO:0004497 ... P00439 9843368
    4223 5rxn:A (1.2) BS01 FE ? GO:0005506 ... P00268 N/A
    4224 5sve:A (2.596) BS02 FE 3.1.3.16 GO:0016787 ... Q08209 27974827
    4225 5t5v:A (1.8) BS01 FE 1.13.11.12 GO:0005506 ... P08170 28691068
    4226 5t5v:B (1.8) BS01 FE 1.13.11.12 GO:0005506 ... P08170 28691068
    4227 5tds:A (1.719) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    4228 5tds:A (1.719) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    4229 5tds:D (1.719) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    4230 5tds:D (1.719) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    4231 5tdt:A (1.818) BS04 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    4232 5tdt:A (1.818) BS05 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    4233 5tdt:D (1.818) BS03 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    4234 5tdt:D (1.818) BS04 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    4235 5tdu:A (1.742) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    4236 5tdu:A (1.742) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    4237 5tdv:A (2.001) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    4238 5tdv:A (2.001) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    4239 5tdv:D (2.001) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    4240 5tdv:D (2.001) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    4241 5tg0:A (1.44) BS01 FE ? GO:0046872 ... Q4FNM4 28511016
    4242 5tk5:A (1.88) BS01 FE 1.13.11.6 GO:0000334 ... P46952 28375145
    4243 5tpg:A (1.5) BS01 FE 1.14.16.4 GO:0004497 ... P17752 28041831
    4244 5tqo:A (1.7) BS01 FE 1.13.11.12 GO:0005506 ... P08170 30645119
    4245 5tqo:B (1.7) BS01 FE 1.13.11.12 GO:0005506 ... P08170 30645119
    4246 5tqp:A (1.7) BS01 FE 1.13.11.12 GO:0005506 ... P08170 28691068
    4247 5tqp:B (1.7) BS01 FE 1.13.11.12 GO:0005506 ... P08170 28691068
    4248 5u57:A (2.73) BS01 FE 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    4249 5u57:B (2.73) BS01 FE 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    4250 5u57:C (2.73) BS01 FE 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    4251 5u57:D (2.73) BS01 FE 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    4252 5u58:A (2.7) BS01 FE 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    4253 5u58:B (2.7) BS01 FE 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    4254 5u58:C (2.7) BS01 FE 1.11.1.23 GO:0003677 ... Q9JN69 27977135
    4255 5uq6:A (1.182) BS01 FE 3.1.3.2 GO:0003993 ... P09889 28261912
    4256 5uq6:A (1.182) BS02 FE 3.1.3.2 GO:0003993 ... P09889 28261912
    4257 5ux1:A (1.5) BS01 FE N/A GO:0006400 ... N/A N/A
    4258 5ux1:A (1.5) BS02 FE N/A GO:0006400 ... N/A N/A
    4259 5ux1:B (1.5) BS01 FE N/A GO:0006400 ... N/A N/A
    4260 5ux1:B (1.5) BS02 FE N/A GO:0006400 ... N/A N/A
    4261 5ux1:C (1.5) BS01 FE N/A GO:0006400 ... N/A N/A
    4262 5ux1:C (1.5) BS02 FE N/A GO:0006400 ... N/A N/A
    4263 5ux1:D (1.5) BS01 FE N/A GO:0006400 ... N/A N/A
    4264 5ux1:D (1.5) BS02 FE N/A GO:0006400 ... N/A N/A
    4265 5ux2:A (1.99) BS01 FE N/A GO:0071771 ... N/A N/A
    4266 5ux2:A (1.99) BS02 FE N/A GO:0071771 ... N/A N/A
    4267 5ux2:B (1.99) BS01 FE N/A GO:0071771 ... N/A N/A
    4268 5ux2:B (1.99) BS02 FE N/A GO:0071771 ... N/A N/A
    4269 5uy4:A (1.915) BS01 FE ? GO:0007155 ... Q56952 28695856
    4270 5uyb:A (1.95) BS01 FE ? GO:0007155 ... Q56952 28695856
    4271 5uye:A (2.088) BS01 FE ? GO:0007155 ... Q56952 28695856
    4272 5v0f:A (2.23) BS02 FE ? N/A D1A230 N/A
    4273 5v1b:A (2.49) BS01 FE 1.14.11.-
    1.14.11.29    		 GO:0005506 ... Q96KS0 28594552
    4274 5v2d:A (1.9) BS01 FE N/A GO:0016702 ... N/A 30115012
    4275 5v2d:B (1.9) BS01 FE N/A GO:0016702 ... N/A 30115012
    4276 5v2d:C (1.9) BS01 FE N/A GO:0016702 ... N/A 30115012
    4277 5v2d:D (1.9) BS01 FE N/A GO:0016702 ... N/A 30115012
    4278 5v33:L (3.487) BS05 FE ? GO:0009772 ... P0C0Y8 28469762
    4279 5v33:M (3.487) BS03 FE ? GO:0009772 ... P0C0Y9 28469762
    4280 5v4t:A (1.7) BS01 FE ? GO:0016491 ... Q970H5 N/A
    4281 5v4t:B (1.7) BS01 FE ? GO:0016491 ... Q970H5 N/A
    4282 5ve3:A (1.793) BS01 FE '1.13.11.18
    2.8.1.1'    		 GO:0006749 ... B2TEQ2 28684420
    4283 5ve3:B (1.793) BS01 FE '1.13.11.18
    2.8.1.1'    		 GO:0006749 ... B2TEQ2 28684420
    4284 5ve4:A (2.65) BS01 FE '1.13.11.18
    2.8.1.1'    		 GO:0006749 ... B2TEQ2 28684420
    4285 5ve4:B (2.65) BS01 FE '1.13.11.18
    2.8.1.1'    		 GO:0006749 ... B2TEQ2 28684420
    4286 5ve4:C (2.65) BS01 FE '1.13.11.18
    2.8.1.1'    		 GO:0006749 ... B2TEQ2 28684420
    4287 5ve5:A (2.35) BS01 FE '1.13.11.18
    2.8.1.1'    		 GO:0006749 ... B2TEQ2 28684420
    4288 5ve5:B (2.35) BS01 FE '1.13.11.18
    2.8.1.1'    		 GO:0006749 ... B2TEQ2 28684420
    4289 5ve5:C (2.35) BS01 FE '1.13.11.18
    2.8.1.1'    		 GO:0006749 ... B2TEQ2 28684420
    4290 5vg2:A (2.46) BS01 FE ? GO:0003824 ... T1K8P1 30529144
    4291 5vg2:B (2.46) BS01 FE ? GO:0003824 ... T1K8P1 30529144
    4292 5vg2:C (2.46) BS01 FE ? GO:0003824 ... T1K8P1 30529144
    4293 5vg2:U (2.46) BS01 FE ? GO:0003824 ... T1K8P1 30529144
    4294 5vq4:B (2.3) BS02 FE 1.18.6.1 GO:0005524 ... P07329 28692802
    4295 5vq4:B (2.3) BS03 FE 1.18.6.1 GO:0005524 ... P07329 28692802
    4296 5vq4:D (2.3) BS01 FE 1.18.6.1 GO:0005524 ... P07329 28692802
    4297 5vq4:D (2.3) BS02 FE 1.18.6.1 GO:0005524 ... P07329 28692802
    4298 5vxt:A (1.75) BS01 FE 1.13.11.1 GO:0003824 ... B1Z4S0 N/A
    4299 5vxt:B (1.75) BS01 FE 1.13.11.1 GO:0003824 ... B1Z4S0 N/A
    4300 5wtd:A (2.501) BS01 FE ? GO:0005515 ... P02787 35690040
    4301 5ww3:A (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4302 5ww3:A (2.05) BS04 FE ? GO:0003677 ... A0QXB7 28418062
    4303 5ww3:B (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4304 5ww3:B (2.05) BS02 FE ? GO:0003677 ... A0QXB7 28418062
    4305 5ww3:C (2.05) BS03 FE ? GO:0003677 ... A0QXB7 28418062
    4306 5ww3:D (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4307 5ww4:A (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4308 5ww4:B (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4309 5ww4:C (2.05) BS02 FE ? GO:0003677 ... A0QXB7 28418062
    4310 5ww4:D (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4311 5ww5:A (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4312 5ww5:C (2.04) BS03 FE ? GO:0003677 ... A0QXB7 28418062
    4313 5ww6:A (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4314 5ww6:B (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4315 5ww6:C (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4316 5ww6:D (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4317 5ww7:A (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4318 5ww7:B (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4319 5ww7:C (2.05) BS03 FE ? GO:0003677 ... A0QXB7 28418062
    4320 5ww7:D (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4321 5ww8:A (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4322 5ww8:A (2.04) BS03 FE ? GO:0003677 ... A0QXB7 28418062
    4323 5ww8:B (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4324 5ww8:C (2.04) BS02 FE ? GO:0003677 ... A0QXB7 28418062
    4325 5ww8:D (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4326 5ww9:A (2.0) BS02 FE ? GO:0003677 ... A0QXB7 28418062
    4327 5ww9:A (2.0) BS03 FE ? GO:0003677 ... A0QXB7 28418062
    4328 5ww9:B (2.0) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4329 5ww9:C (2.0) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    4330 5ww9:D (2.0) BS02 FE ? GO:0003677 ... A0QXB7 28418062
    4331 5x5p:A (2.7) BS01 FE ? GO:0005515 ... P02787 35690040
    4332 5xbp:A (2.9) BS01 FE ? GO:0005506 ... M9PW10 28448625
    4333 5xbp:D (2.9) BS01 FE ? GO:0005506 ... M9PW10 28448625
    4334 5xbp:G (2.9) BS01 FE ? GO:0005506 ... M9PW10 28448625
    4335 5xgk:A (2.8) BS02 FE 1.13.11.27 GO:0003868 ... P93836 31549053
    4336 5xgk:B (2.8) BS01 FE 1.13.11.27 GO:0003868 ... P93836 31549053
    4337 5xgk:C (2.8) BS01 FE 1.13.11.27 GO:0003868 ... P93836 31549053
    4338 5xgk:D (2.8) BS01 FE 1.13.11.27 GO:0003868 ... P93836 31549053
    4339 5xnc:A (1.84) BS03 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    4340 5xnc:B (1.84) BS01 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    4341 5xnc:C (1.84) BS03 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    4342 5xnc:D (1.84) BS01 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    4343 5xnc:E (1.84) BS03 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    4344 5xnc:F (1.84) BS01 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    4345 5xnc:G (1.84) BS03 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    4346 5xnf:A (1.9) BS01 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    4347 5xnf:B (1.9) BS01 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    4348 5xnh:A (1.95) BS01 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    4349 5xnh:H (1.95) BS01 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    4350 5y5s:L (1.9) BS06 FE ? GO:0005515 ... D2Z0P3 29618814
    4351 5y5s:M (1.9) BS02 FE ? GO:0005515 ... A8ASG6 29618814
    4352 5y6k:A (2.86) BS01 FE ? GO:0005515 ... P02787 29323384
    4353 5y7r:B (1.96) BS01 FE 1.14.11.81 N/A Q5AR53 29314482
    4354 5y7t:B (2.05) BS01 FE 1.14.11.81 N/A Q5AR53 29314482
    4355 5ybn:A (2.104) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    4356 5ybn:B (2.104) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    4357 5ybo:A (2.204) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    4358 5ybo:B (2.204) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    4359 5ybp:A (2.312) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    4360 5ybp:B (2.312) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    4361 5ybq:A (2.25) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    4362 5ybq:B (2.25) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    4363 5ybr:A (2.261) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    4364 5ybr:B (2.261) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    4365 5ybs:A (2.3) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    4366 5ybs:B (2.3) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    4367 5ybt:A (2.35) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    4368 5ybt:B (2.35) BS02 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    4369 5yl6:A (2.0) BS01 FE ? GO:0006974 ... Q9UT12 N/A
    4370 5ylb:A (1.79) BS01 FE ? GO:0006974 ... Q9UT12 N/A
    4371 5yq7:L (4.1) BS06 FE ? GO:0009772 ... Q83XD0 29674684
    4372 5yq7:M (4.1) BS03 FE ? GO:0009772 ... Q83XD0 29674684
    4373 5yvz:A (1.6) BS01 FE ? GO:0046872 ... B3DUR4 30092253
    4374 5yw0:A (1.49) BS01 FE ? GO:0046872 ... B3DUR4 30092253
    4375 5ywh:A (2.72) BS01 FE 1.13.11.27 GO:0003868 ... P93836 N/A
    4376 5ywh:B (2.72) BS01 FE 1.13.11.27 GO:0003868 ... P93836 N/A
    4377 5zdp:A (2.71) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4378 5zdp:A (2.71) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4379 5zdp:B (2.71) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4380 5zdp:B (2.71) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4381 5zdp:C (2.71) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4382 5zdp:C (2.71) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4383 5zdp:D (2.71) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4384 5zdp:D (2.71) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4385 5zdq:A (2.3) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4386 5zdq:A (2.3) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4387 5zdq:B (2.3) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4388 5zdq:B (2.3) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4389 5zdq:C (2.3) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4390 5zdq:C (2.3) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4391 5zdq:D (2.3) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4392 5zdq:D (2.3) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4393 5zdr:A (2.59) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4394 5zdr:A (2.59) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4395 5zdr:B (2.59) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4396 5zdr:B (2.59) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4397 5zdr:C (2.59) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4398 5zdr:C (2.59) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4399 5zdr:D (2.59) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    4400 5zdr:D (2.59) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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