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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4001 5jk8:A (2.394) BS03 FE 1.14.16.1
    1.14.16.4    		 GO:0004497 ... Q54XS1 N/A
    4002 5jk8:B (2.394) BS04 FE 1.14.16.1
    1.14.16.4    		 GO:0004497 ... Q54XS1 N/A
    4003 5jkk:A (1.6) BS01 FE 1.16.3.1 GO:0004322 ... P02794 30351078
    4004 5jkk:B (1.6) BS01 FE 1.16.3.1 GO:0004322 ... P02794 30351078
    4005 5jkk:C (1.6) BS01 FE 1.16.3.1 GO:0004322 ... P02794 30351078
    4006 5jkk:D (1.6) BS01 FE 1.16.3.1 GO:0004322 ... P02794 30351078
    4007 5jkk:E (1.6) BS01 FE 1.16.3.1 GO:0004322 ... P02794 30351078
    4008 5jkk:F (1.6) BS01 FE 1.16.3.1 GO:0004322 ... P02794 30351078
    4009 5jkk:G (1.6) BS01 FE 1.16.3.1 GO:0004322 ... P02794 30351078
    4010 5jkk:H (1.6) BS01 FE 1.16.3.1 GO:0004322 ... P02794 30351078
    4011 5jkl:A (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4012 5jkl:B (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4013 5jkl:C (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4014 5jkl:D (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4015 5jkl:E (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4016 5jkl:F (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4017 5jkl:G (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4018 5jkl:H (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4019 5jkl:I (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4020 5jkl:J (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4021 5jkl:K (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4022 5jkl:L (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4023 5jkm:A (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4024 5jkm:B (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4025 5jkm:C (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4026 5jkm:D (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4027 5jkm:E (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4028 5jkm:F (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4029 5jkm:G (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4030 5jkm:H (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4031 5jkm:I (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4032 5jkm:J (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4033 5jkm:K (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4034 5jkm:L (1.8) BS01 FE 1.16.3.1 GO:0004322 ... P02794 27617514
    4035 5jso:A (2.0) BS01 FE 4.4.1.3 GO:0016829 ... D0CY60 27755868
    4036 5jso:B (2.0) BS01 FE 4.4.1.3 GO:0016829 ... D0CY60 27755868
    4037 5jsp:A (2.2) BS01 FE 4.4.1.3 GO:0016829 ... D0CY60 27755868
    4038 5jsp:B (2.2) BS01 FE 4.4.1.3 GO:0016829 ... D0CY60 27755868
    4039 5jsr:A (2.5) BS01 FE 4.4.1.3 GO:0016829 ... D0CY60 27755868
    4040 5jsr:B (2.5) BS01 FE 4.4.1.3 GO:0016829 ... D0CY60 27755868
    4041 5jy8:A (2.942) BS01 FE 5.4.4.2 GO:0000287 ... P0AEJ3 27373320
    4042 5jy8:A (2.942) BS02 FE 5.4.4.2 GO:0000287 ... P0AEJ3 27373320
    4043 5jy8:B (2.942) BS01 FE 5.4.4.2 GO:0000287 ... P0AEJ3 27373320
    4044 5jy8:B (2.942) BS02 FE 5.4.4.2 GO:0000287 ... P0AEJ3 27373320
    4045 5jy8:B (2.942) BS03 FE 5.4.4.2 GO:0000287 ... P0AEJ3 27373320
    4046 5k53:A (1.8) BS01 FE 4.1.99.5 GO:0016829 ... A0A1D5B390 27329814
    4047 5k53:A (1.8) BS02 FE 4.1.99.5 GO:0016829 ... A0A1D5B390 27329814
    4048 5k53:B (1.8) BS01 FE 4.1.99.5 GO:0016829 ... A0A1D5B390 27329814
    4049 5k53:B (1.8) BS02 FE 4.1.99.5 GO:0016829 ... A0A1D5B390 27329814
    4050 5kik:A (2.2) BS01 FE 1.14.99.65 GO:0005737 ... F2RB80 27668828
    4051 5kik:A (2.2) BS02 FE 1.14.99.65 GO:0005737 ... F2RB80 27668828
    4052 5koh:B (1.83) BS02 FE 1.18.6.1 GO:0005524 ... A9H5W8 27487256
    4053 5koh:B (1.83) BS03 FE 1.18.6.1 GO:0005524 ... A9H5W8 27487256
    4054 5koh:D (1.83) BS01 FE 1.18.6.1 GO:0005524 ... A9H5W8 27487256
    4055 5koh:D (1.83) BS02 FE 1.18.6.1 GO:0005524 ... A9H5W8 27487256
    4056 5koj:B (2.592) BS02 FE 1.18.6.1 GO:0005524 ... A9H5W8 27487256
    4057 5koj:B (2.592) BS03 FE 1.18.6.1 GO:0005524 ... A9H5W8 27487256
    4058 5koj:D (2.592) BS01 FE 1.18.6.1 GO:0005524 ... A9H5W8 27487256
    4059 5koj:D (2.592) BS03 FE 1.18.6.1 GO:0005524 ... A9H5W8 27487256
    4060 5l01:A (1.9) BS01 FE 1.14.16.4 GO:0002576 ... P17752 28041831
    4061 5lbh:A (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    4062 5lbh:A (2.553) BS02 FE N/A GO:0008199 ... N/A 28074932
    4063 5lbh:B (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    4064 5lbh:C (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    4065 5lbh:C (2.553) BS02 FE N/A GO:0008199 ... N/A 28074932
    4066 5lbh:D (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    4067 5lbh:E (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    4068 5lbh:F (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    4069 5lbh:G (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    4070 5lbh:G (2.553) BS02 FE N/A GO:0008199 ... N/A 28074932
    4071 5lbh:H (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    4072 5lbh:I (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    4073 5lbh:J (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    4074 5lbh:J (2.553) BS02 FE N/A GO:0008199 ... N/A 28074932
    4075 5lbh:K (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    4076 5lbh:L (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    4077 5lbh:L (2.553) BS02 FE N/A GO:0008199 ... N/A 28074932
    4078 5lg2:A (2.22) BS01 FE ? GO:0005506 ... P02791 28202724
    4079 5lg2:A (2.22) BS02 FE ? GO:0005506 ... P02791 28202724
    4080 5lg2:A (2.22) BS03 FE ? GO:0005506 ... P02791 28202724
    4081 5lg2:A (2.22) BS04 FE ? GO:0005506 ... P02791 28202724
    4082 5lg8:A (1.98) BS01 FE ? GO:0005506 ... P02792 28202724
    4083 5lg8:A (1.98) BS02 FE ? GO:0005506 ... P02792 28202724
    4084 5lg8:A (1.98) BS03 FE ? GO:0005506 ... P02792 28202724
    4085 5lg8:A (1.98) BS04 FE ? GO:0005506 ... P02792 28202724
    4086 5lld:A (2.651) BS01 FE ? GO:0005506 ... Q46877 27725182
    4087 5lld:A (2.651) BS02 FE ? GO:0005506 ... Q46877 27725182
    4088 5lri:L (2.4) BS04 FE ? GO:0009772 ... Q3J1A5 27687473
    4089 5lri:M (2.4) BS02 FE ? GO:0009772 ... Q3J1A6 27687473
    4090 5lse:L (2.5) BS05 FE ? GO:0009772 ... P0C0Y8 27687473
    4091 5lse:M (2.5) BS03 FE ? GO:0009772 ... P0C0Y9 27687473
    4092 5lun:A (1.08) BS01 FE 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 28420789
    4093 5lun:B (1.08) BS01 FE 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 28420789
    4094 5lun:C (1.08) BS01 FE 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 28420789
    4095 5lun:D (1.08) BS01 FE 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 28420789
    4096 5lwz:A (2.1) BS01 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    4097 5lwz:A (2.1) BS02 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    4098 5lwz:B (2.1) BS01 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    4099 5lwz:B (2.1) BS02 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    4100 5lwz:C (2.1) BS01 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    4101 5lwz:C (2.1) BS02 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    4102 5lx0:A (2.4) BS01 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    4103 5lx0:A (2.4) BS02 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    4104 5lx1:A (2.7) BS01 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    4105 5lx1:A (2.7) BS02 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    4106 5lx4:A (1.9) BS01 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    4107 5lx7:A (1.95) BS01 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    4108 5m21:B (1.99) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    4109 5m21:D (1.99) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    4110 5m21:F (1.99) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    4111 5m21:H (1.99) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    4112 5m22:B (2.4) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    4113 5m22:D (2.4) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    4114 5m22:F (2.4) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    4115 5m22:H (2.4) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    4116 5m26:B (1.9) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    4117 5m26:D (1.9) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    4118 5m26:F (1.9) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    4119 5m26:H (1.9) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    4120 5m4o:B (2.1) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    4121 5m4o:D (2.1) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    4122 5m4o:F (2.1) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    4123 5m4o:H (2.1) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    4124 5med:A (1.8) BS01 FE 1.13.11.33 GO:0016491 ... B7JX99 28522865
    4125 5med:B (1.8) BS01 FE 1.13.11.33 GO:0016491 ... B7JX99 28522865
    4126 5mee:A (2.5) BS01 FE 1.13.11.33 GO:0016491 ... B7JX99 28522865
    4127 5mee:B (2.5) BS01 FE 1.13.11.33 GO:0016491 ... B7JX99 28522865
    4128 5mef:A (2.357) BS01 FE 1.13.11.33 GO:0016491 ... B7JX99 28522865
    4129 5mef:B (2.357) BS01 FE 1.13.11.33 GO:0016491 ... B7JX99 28522865
    4130 5mx2:A (2.197) BS07 FE 1.10.3.9 GO:0005506 ... P0A444 28718766
    4131 5mx2:D (2.197) BS05 FE 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    4132 5mx2:a (2.197) BS02 FE 1.10.3.9 GO:0005506 ... P0A444 28718766
    4133 5mx2:d (2.197) BS02 FE 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    4134 5n5e:A (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4135 5n5e:B (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4136 5n5e:C (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4137 5n5e:D (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4138 5n5e:E (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4139 5n5e:F (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4140 5n5e:G (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4141 5n5e:H (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4142 5n5e:I (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4143 5n5e:J (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4144 5n5e:K (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4145 5n5e:L (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4146 5n5e:M (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4147 5n5e:N (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4148 5n5e:O (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4149 5n5e:P (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4150 5n5e:Q (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4151 5n5e:R (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4152 5n5e:T (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4153 5n5e:U (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4154 5n5e:V (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4155 5n5e:W (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4156 5n5e:X (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4157 5n5e:Y (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4158 5n5e:Z (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4159 5n5e:a (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4160 5n5e:b (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4161 5n5e:c (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4162 5n5e:d (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4163 5n5e:e (2.026) BS01 FE 1.16.3.1 GO:0016491 ... Q8U1L4 30837306
    4164 5nhk:A (1.8) BS01 FE ? GO:0000976 ... Q5NIN6 30271974
    4165 5nhk:B (1.8) BS01 FE ? GO:0000976 ... Q5NIN6 30271974
    4166 5nhk:C (1.8) BS01 FE ? GO:0000976 ... Q5NIN6 30271974
    4167 5nhk:D (1.8) BS01 FE ? GO:0000976 ... Q5NIN6 30271974
    4168 5nrx:A (2.35) BS01 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    4169 5nrx:A (2.35) BS02 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    4170 5nry:A (1.85) BS01 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    4171 5nry:A (1.85) BS02 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    4172 5nw3:A (0.59) BS01 FE ? GO:0005506 ... P24297 N/A
    4173 5oah:A (1.8) BS01 FE ? GO:0006826 ... Q0P8Q4 N/A
    4174 5oah:B (1.8) BS01 FE ? GO:0006826 ... Q0P8Q4 N/A
    4175 5oba:A (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4176 5oba:B (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4177 5oba:C (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4178 5oba:D (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4179 5oba:E (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4180 5oba:F (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4181 5oba:G (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4182 5oba:H (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4183 5oba:I (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4184 5oba:J (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4185 5oba:K (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4186 5oba:L (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4187 5oba:M (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4188 5oba:N (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4189 5oba:O (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4190 5oba:P (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4191 5oba:Q (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4192 5oba:R (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4193 5oba:S (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4194 5oba:T (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4195 5oba:U (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4196 5oba:V (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4197 5oba:W (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4198 5oba:X (2.85) BS01 FE 1.16.3.1 GO:0004322 ... P09528 30102720
    4199 5od5:A (1.9) BS01 FE ? GO:0006826 ... Q0P8Q4 N/A
    4200 5odh:F (2.2) BS02 FE 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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