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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3801 4zlw:H (2.0) BS03 FE 1.16.3.1 GO:0006826 ... B6DMH6 26396187
    3802 4zlw:H (2.0) BS04 FE 1.16.3.1 GO:0006826 ... B6DMH6 26396187
    3803 4zmc:A (1.9) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 26396187
    3804 4zmc:C (1.9) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 26396187
    3805 4zmc:D (1.9) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 26396187
    3806 4zmc:E (1.9) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 26396187
    3807 4zmc:F (1.9) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 26396187
    3808 4zmc:G (1.9) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 26396187
    3809 4zmc:H (1.9) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 26396187
    3810 4zn3:A (2.3) BS01 FE ? GO:0003735 ... Q57818 26433031
    3811 4zn3:B (2.3) BS01 FE ? GO:0005515 ... Q57839 26433031
    3812 4zn3:B (2.3) BS02 FE ? GO:0005515 ... Q57839 26433031
    3813 4ztt:C (1.83) BS01 FE 1.16.3.2 GO:0004322 ... P0A998 27777002
    3814 4ztt:D (1.83) BS01 FE 1.16.3.2 GO:0004322 ... P0A998 27777002
    3815 4ztt:D (1.83) BS02 FE 1.16.3.2 GO:0004322 ... P0A998 27777002
    3816 4ztt:F (1.83) BS01 FE 1.16.3.2 GO:0004322 ... P0A998 27777002
    3817 4ztt:F (1.83) BS02 FE 1.16.3.2 GO:0004322 ... P0A998 27777002
    3818 4zxc:W (3.05) BS01 FE ? GO:0046872 ... C1I209 26304122
    3819 4zxc:Z (3.05) BS01 FE ? GO:0046872 ... C1I209 26304122
    3820 5a1j:A (1.6) BS01 FE ? GO:0006826 ... Q0P8Q4 23512642
    3821 5a5d:A (1.74) BS01 FE ? GO:0006826 ... Q0P8Q4 28383577
    3822 5a5v:A (2.04) BS01 FE ? GO:0006826 ... Q0P8Q4 28383577
    3823 5ad1:A (1.32) BS01 FE ? GO:0006826 ... Q0P8Q4 28383577
    3824 5adv:A (2.1) BS01 FE ? GO:0006826 ... Q0P8Q4 27162326
    3825 5adv:B (2.1) BS01 FE ? GO:0006826 ... Q0P8Q4 27162326
    3826 5adv:C (2.1) BS01 FE ? GO:0006826 ... Q0P8Q4 27162326
    3827 5adw:A (1.9) BS01 FE ? GO:0006826 ... Q0P8Q4 27162326
    3828 5adw:B (1.9) BS01 FE ? GO:0006826 ... Q0P8Q4 27162326
    3829 5adw:C (1.9) BS01 FE ? GO:0006826 ... Q0P8Q4 27162326
    3830 5ao0:A (3.731) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    3831 5ao0:B (3.731) BS02 FE 3.1.5.- N/A Q9Y3Z3 26431200
    3832 5ao1:A (2.545) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    3833 5ao1:B (2.545) BS02 FE 3.1.5.- N/A Q9Y3Z3 26431200
    3834 5ao1:C (2.545) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    3835 5ao1:D (2.545) BS02 FE 3.1.5.- N/A Q9Y3Z3 26431200
    3836 5ao2:A (2.966) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    3837 5ao2:B (2.966) BS02 FE 3.1.5.- N/A Q9Y3Z3 26431200
    3838 5ao2:C (2.966) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    3839 5ao2:D (2.966) BS03 FE 3.1.5.- N/A Q9Y3Z3 26431200
    3840 5ao3:A (3.004) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    3841 5ao3:B (3.004) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    3842 5ao3:C (3.004) BS02 FE 3.1.5.- N/A Q9Y3Z3 26431200
    3843 5ao3:D (3.004) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    3844 5ao4:A (3.7) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    3845 5ao4:B (3.7) BS03 FE 3.1.5.- N/A Q9Y3Z3 26431200
    3846 5ao4:C (3.7) BS01 FE 3.1.5.- N/A Q9Y3Z3 26431200
    3847 5ao4:D (3.7) BS02 FE 3.1.5.- N/A Q9Y3Z3 26431200
    3848 5b5m:L (3.3) BS06 FE ? GO:0005515 ... D2Z0P3 27933779
    3849 5b5m:M (3.3) BS04 FE ? GO:0005515 ... A8ASG6 27933779
    3850 5b5m:x (3.3) BS06 FE ? GO:0005515 ... D2Z0P3 27933779
    3851 5b5m:y (3.3) BS03 FE ? GO:0005515 ... A8ASG6 27933779
    3852 5b5n:L (3.3) BS05 FE ? GO:0005515 ... D2Z0P3 27933779
    3853 5b5n:M (3.3) BS04 FE ? GO:0005515 ... A8ASG6 27933779
    3854 5b5n:x (3.3) BS06 FE ? GO:0005515 ... D2Z0P3 27933779
    3855 5b5n:y (3.3) BS04 FE ? GO:0005515 ... A8ASG6 27933779
    3856 5b8i:A (1.85) BS02 FE 3.1.3.16 GO:0016787 ... J3K8M7 31537789
    3857 5bpx:A (1.88) BS01 FE 1.13.11.41 N/A Q9REI7 26457516
    3858 5c1v:A (3.35) BS01 FE 3.1.3.16 GO:0016787 ... Q08209 26248042
    3859 5c1v:B (3.35) BS01 FE 3.1.3.16 GO:0016787 ... Q08209 26248042
    3860 5c6f:A (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 27777002
    3861 5c6f:B (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 27777002
    3862 5c6f:J (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 27777002
    3863 5c6f:K (2.0) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 27777002
    3864 5cry:A (2.79) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    3865 5cry:B (2.79) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    3866 5cu1:A (2.3) BS01 FE 4.4.1.3 GO:0003674 ... Q5LT18 N/A
    3867 5d4f:A (1.72) BS01 FE ? N/A D1A230 N/A
    3868 5d9y:A (1.971) BS03 FE 1.14.11.80 GO:0006211 ... Q6N021 26524525
    3869 5da5:A (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3870 5da5:B (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3871 5da5:C (2.064) BS02 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3872 5da5:D (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3873 5da5:E (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3874 5da5:F (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3875 5da5:G (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3876 5da5:H (2.064) BS02 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3877 5da5:I (2.064) BS02 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3878 5da5:J (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3879 5da5:K (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3880 5da5:L (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3881 5da5:M (2.064) BS04 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3882 5da5:N (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3883 5da5:O (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3884 5da5:P (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3885 5da5:Q (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3886 5da5:R (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3887 5da5:S (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3888 5da5:T (2.064) BS02 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3889 5da5:U (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3890 5da5:V (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3891 5da5:W (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3892 5da5:X (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3893 5da5:Y (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3894 5da5:Z (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3895 5da5:a (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3896 5da5:b (2.064) BS03 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3897 5da5:c (2.064) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3898 5da5:d (2.064) BS02 FE 1.16.3.1 GO:0004322 ... Q2RVS1 27529188
    3899 5dco:A (2.326) BS01 FE 1.17.4.1 GO:0009263 ... Q5KW80 26324712
    3900 5dco:A (2.326) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 26324712
    3901 5dcr:A (2.108) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 26324712
    3902 5dcs:A (2.006) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 26324712
    3903 5den:A (2.9) BS01 FE 1.14.16.1 GO:0004497 ... P04176 26884182
    3904 5den:B (2.9) BS01 FE 1.14.16.1 GO:0004497 ... P04176 26884182
    3905 5den:C (2.9) BS01 FE 1.14.16.1 GO:0004497 ... P04176 26884182
    3906 5den:D (2.9) BS01 FE 1.14.16.1 GO:0004497 ... P04176 26884182
    3907 5deu:A (1.801) BS03 FE 1.14.11.80 GO:0006211 ... Q6N021 26524525
    3908 5efv:A (2.2) BS01 FE ? GO:0046872 ... Q8SDT4 27282779
    3909 5efv:B (2.2) BS01 FE ? GO:0046872 ... Q8SDT4 27282779
    3910 5efv:C (2.2) BS01 FE ? GO:0046872 ... Q8SDT4 27282779
    3911 5ekb:A (2.074) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 27138102
    3912 5ep9:A (2.13) BS02 FE ? GO:0016491 ... Q9EYI0
    Q9RN67
    27114534
    3913 5ep9:B (2.13) BS02 FE ? GO:0016491 ... Q9EYI0
    Q9RN67
    27114534
    3914 5ep9:C (2.13) BS02 FE ? GO:0016491 ... Q9EYI0
    Q9RN67
    27114534
    3915 5ep9:D (2.13) BS02 FE ? GO:0016491 ... Q9EYI0
    Q9RN67
    27114534
    3916 5epa:A (2.24) BS01 FE ? GO:0016491 ... Q9RN60 27114534
    3917 5epa:B (2.24) BS01 FE ? GO:0016491 ... Q9RN60 27114534
    3918 5epa:C (2.24) BS01 FE ? GO:0016491 ... Q9RN60 27114534
    3919 5epa:D (2.24) BS01 FE ? GO:0016491 ... Q9RN60 27114534
    3920 5epa:E (2.24) BS01 FE ? GO:0016491 ... Q9RN60 27114534
    3921 5epa:F (2.24) BS01 FE ? GO:0016491 ... Q9RN60 27114534
    3922 5equ:A (2.2) BS01 FE ? GO:0016491 ... Q9EYI0
    Q9RN67
    27114534
    3923 5equ:B (2.2) BS01 FE ? GO:0016491 ... Q9EYI0
    Q9RN67
    27114534
    3924 5equ:C (2.2) BS01 FE ? GO:0016491 ... Q9EYI0
    Q9RN67
    27114534
    3925 5equ:D (2.2) BS01 FE ? GO:0016491 ... Q9EYI0
    Q9RN67
    27114534
    3926 5eqv:A (1.45) BS01 FE 3.1.3.6
    3.1.4.16
    GO:0000166 ... A0A5P8YBY3 N/A
    3927 5eqv:A (1.45) BS02 FE 3.1.3.6
    3.1.4.16
    GO:0000166 ... A0A5P8YBY3 N/A
    3928 5fgj:A (3.6) BS01 FE 1.14.16.1 GO:0004497 ... P04176 27145334
    3929 5fgj:B (3.6) BS01 FE 1.14.16.1 GO:0004497 ... P04176 27145334
    3930 5fgj:C (3.6) BS01 FE 1.14.16.1 GO:0004497 ... P04176 27145334
    3931 5fgj:D (3.6) BS01 FE 1.14.16.1 GO:0004497 ... P04176 27145334
    3932 5fnn:A (2.09) BS02 FE 1.7.2.5 GO:0005506 ... P69506 27246459
    3933 5fnn:B (2.09) BS02 FE 1.7.2.5 GO:0005506 ... P69506 27246459
    3934 5fny:B (2.01) BS01 FE 1.7.2.5 GO:0005506 ... P69506 27246459
    3935 5fqa:A (1.1) BS01 FE 3.5.2.6 GO:0008270 ... P04190 27498591
    3936 5fqa:A (1.1) BS02 FE 3.5.2.6 GO:0008270 ... P04190 27498591
    3937 5gn7:A (3.2) BS01 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    3938 5gn7:A (3.2) BS02 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    3939 5gn7:B (3.2) BS01 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    3940 5gn7:B (3.2) BS02 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    3941 5gn7:C (3.2) BS01 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    3942 5gn7:C (3.2) BS02 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    3943 5gn7:D (3.2) BS01 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    3944 5gn7:D (3.2) BS02 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    3945 5gn9:A (3.2) BS01 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    3946 5gn9:A (3.2) BS02 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    3947 5gn9:B (3.2) BS01 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    3948 5gn9:B (3.2) BS02 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    3949 5gn9:C (3.2) BS01 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    3950 5gn9:C (3.2) BS02 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    3951 5gn9:D (3.2) BS01 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    3952 5gn9:D (3.2) BS02 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    3953 5guw:B (3.2) BS05 FE 1.7.2.5 GO:0004129 ... Q59647 28847930
    3954 5guw:D (3.2) BS04 FE 1.7.2.5 GO:0004129 ... Q59647 28847930
    3955 5gux:B (3.3) BS03 FE 1.7.2.5 GO:0004129 ... Q59647 28847930
    3956 5hbc:A (2.79) BS01 FE 3.4.21.- GO:0005576 ... P24627 26850578
    3957 5hbc:B (2.79) BS01 FE 3.4.21.- GO:0005576 ... P24627 26850578
    3958 5hdq:A (1.83) BS01 FE ? GO:0007155 ... W8TNQ9 27689696
    3959 5hgw:A (1.6) BS01 FE 3.5.1.88 GO:0006412 ... B1YSH1 N/A
    3960 5hgw:B (1.6) BS01 FE 3.5.1.88 GO:0006412 ... B1YSH1 N/A
    3961 5hio:A (1.9) BS01 FE 3.1.2.32 GO:0016787 ... P20581 27082157
    3962 5hio:A (1.9) BS02 FE 3.1.2.32 GO:0016787 ... P20581 27082157
    3963 5hip:A (1.992) BS01 FE 3.1.2.32 GO:0016787 ... P20581 27082157
    3964 5hip:A (1.992) BS02 FE 3.1.2.32 GO:0016787 ... P20581 27082157
    3965 5hiq:A (2.1) BS01 FE 3.1.2.32 GO:0016787 ... P20581 27082157
    3966 5hiq:A (2.1) BS02 FE 3.1.2.32 GO:0016787 ... P20581 27082157
    3967 5his:A (1.77) BS01 FE 3.1.2.32 GO:0016787 ... P20581 27082157
    3968 5his:A (1.77) BS02 FE 3.1.2.32 GO:0016787 ... P20581 27082157
    3969 5hjh:A (1.88) BS01 FE ? GO:0008199 ... B2J981 N/A
    3970 5hjh:A (1.88) BS02 FE ? GO:0008199 ... B2J981 N/A
    3971 5hjh:B (1.88) BS01 FE ? GO:0008199 ... B2J981 N/A
    3972 5hjh:B (1.88) BS02 FE ? GO:0008199 ... B2J981 N/A
    3973 5hjh:C (1.88) BS01 FE ? GO:0008199 ... B2J981 N/A
    3974 5hjh:C (1.88) BS02 FE ? GO:0008199 ... B2J981 N/A
    3975 5hjh:D (1.88) BS01 FE ? GO:0008199 ... B2J981 N/A
    3976 5hjh:D (1.88) BS02 FE ? GO:0008199 ... B2J981 N/A
    3977 5hl4:A (2.2) BS02 FE ? GO:0005506 ... Q92ZP9 26996959
    3978 5hyg:A (2.03) BS01 FE 1.14.99.67 GO:0016491 ... F2RB83 27229511
    3979 5hyg:A (2.03) BS02 FE 1.14.99.67 GO:0016491 ... F2RB83 27229511
    3980 5hyh:A (2.03) BS01 FE 1.14.99.67 GO:0016491 ... F2RB83 27229511
    3981 5hyh:A (2.03) BS02 FE 1.14.99.67 GO:0016491 ... F2RB83 27229511
    3982 5i0r:A (1.35) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    3983 5i0s:A (1.3) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    3984 5i0t:A (1.37) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    3985 5i0u:A (1.25) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    3986 5i0v:A (1.65) BS01 FE ? GO:0046872 ... A0A0H3PA01 32780051
    3987 5i0v:B (1.65) BS02 FE ? GO:0046872 ... A0A0H3PA01 32780051
    3988 5ihe:A (2.5) BS02 FE 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 27548043
    3989 5ihe:B (2.5) BS02 FE 2.7.7.7
    3.1.11.1
    GO:0003676 ... Q9V2F3 27548043
    3990 5iv5:ZA (4.11) BS01 FE ? GO:0003796 ... P39234 27193680
    3991 5j53:A (1.61) BS01 FE 1.13.11.- GO:0010436 ... Q2GA76 27911781
    3992 5j54:A (1.89) BS01 FE 1.13.11.- GO:0010436 ... Q2GA76 27911781
    3993 5j55:A (1.75) BS01 FE 1.13.11.- GO:0010436 ... Q2GA76 27911781
    3994 5j6d:A (1.9) BS01 FE 1.14.16.4 GO:0004497 ... P17752 27146606
    3995 5j6d:B (1.9) BS02 FE 1.14.16.4 GO:0004497 ... P17752 27146606
    3996 5jct:A (1.73) BS01 FE 1.13.11.24 GO:0003712 ... O00625 28004573
    3997 5jk5:A (2.071) BS01 FE 1.14.16.1
    1.14.16.4
    GO:0004497 ... Q54XS1 N/A
    3998 5jk5:B (2.071) BS01 FE 1.14.16.1
    1.14.16.4
    GO:0004497 ... Q54XS1 N/A
    3999 5jk6:A (2.072) BS02 FE 1.14.16.1
    1.14.16.4
    GO:0004497 ... Q54XS1 N/A
    4000 5jk6:B (2.072) BS03 FE 1.14.16.1
    1.14.16.4
    GO:0004497 ... Q54XS1 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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