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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 1h76:A (2.15) BS03 FE ? GO:0005576 ... P09571 11752780
    202 1h76:A (2.15) BS04 FE ? GO:0005576 ... P09571 11752780
    203 1han:A (1.9) BS01 FE 1.13.11.39 GO:0003824 ... P47228 7481800
    204 1han:A (1.9) BS02 FE 1.13.11.39 GO:0003824 ... P47228 7481800
    205 1hse:A (2.2) BS01 FE 3.4.21.- GO:0005576 ... P02788 9003186
    206 1hu9:A (2.2) BS01 FE 1.13.11.58 GO:0005737 ... P09186 12792803
    207 1hxp:A (1.8) BS02 FE 2.7.7.12 GO:0004335 ... P09148 7669762
    208 1hxp:B (1.8) BS03 FE 2.7.7.12 GO:0004335 ... P09148 7669762
    209 1hxq:A (1.86) BS02 FE 2.7.7.12 GO:0004335 ... P09148 8794735
    210 1hxq:B (1.86) BS02 FE 2.7.7.12 GO:0004335 ... P09148 8794735
    211 1i6q:A (2.7) BS01 FE 3.4.21.- GO:0001503 ... Q9TUM0 11473113
    212 1i6q:A (2.7) BS02 FE 3.4.21.- GO:0001503 ... Q9TUM0 11473113
    213 1ids:A (2.0) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 7877174
    214 1ids:B (2.0) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 7877174
    215 1ids:C (2.0) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 7877174
    216 1ids:D (2.0) BS01 FE 1.15.1.1 GO:0004784 ... P9WGE7 7877174
    217 1iej:A (1.65) BS01 FE ? GO:0005576 ... P02789 11399070
    218 1ik3:A (2.0) BS01 FE 1.13.11.58 GO:0005737 ... P09186 11686682
    219 1iro:A (1.1) BS01 FE ? GO:0005506 ... P00268 8799113
    220 1isb:A (1.85) BS01 FE 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    221 1isb:B (1.85) BS01 FE 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    222 1isc:A (1.8) BS01 FE 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    223 1isc:B (1.8) BS01 FE 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    224 1iu5:A (1.5) BS01 FE ? GO:0005506 ... P24297 15272158
    225 1iu6:A (1.6) BS01 FE ? GO:0009055 ... P24297 15272158
    226 1j30:A (1.7) BS01 FE ? GO:0016491 ... F9VPE5 14529281
    227 1j30:B (1.7) BS03 FE ? GO:0016491 ... F9VPE5 14529281
    228 1j3p:A (2.02) BS01 FE 5.3.1.9 GO:0004347 ... P84140 N/A
    229 1j3q:A (1.85) BS01 FE 5.3.1.9 GO:0004347 ... P84140 N/A
    230 1j3q:B (1.85) BS01 FE 5.3.1.9 GO:0004347 ... P84140 N/A
    231 1j3r:A (2.18) BS02 FE 5.3.1.9 GO:0004347 ... P84140 N/A
    232 1jgw:L (2.8) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    233 1jgw:M (2.8) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    234 1jgx:L (3.01) BS05 FE ? GO:0009772 ... P0C0Y8 11526320
    235 1jgx:M (3.01) BS04 FE ? GO:0009772 ... P0C0Y9 11526320
    236 1jgy:L (2.7) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    237 1jgy:M (2.7) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    238 1jgz:L (2.7) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    239 1jgz:M (2.7) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    240 1jh0:L (3.5) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    241 1jh0:M (3.5) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    242 1ji4:A (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    243 1ji4:A (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    244 1ji4:B (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    245 1ji4:B (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    246 1ji4:C (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    247 1ji4:C (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    248 1ji4:D (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    249 1ji4:D (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    250 1ji4:E (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    251 1ji4:E (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    252 1ji4:F (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    253 1ji4:F (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    254 1ji4:G (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    255 1ji4:G (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    256 1ji4:H (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    257 1ji4:H (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    258 1ji4:I (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    259 1ji4:I (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    260 1ji4:J (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    261 1ji4:J (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    262 1ji4:K (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    263 1ji4:K (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    264 1ji4:L (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    265 1ji4:L (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    266 1ji5:A (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    267 1ji5:B (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    268 1ji5:C (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    269 1ji5:D (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    270 1jig:A (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    271 1jig:A (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    272 1jig:B (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    273 1jig:B (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    274 1jig:C (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    275 1jig:C (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    276 1jig:D (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    277 1jig:D (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    278 1jnf:A (2.6) BS03 FE ? GO:0005576 ... P19134 11752780
    279 1jnf:A (2.6) BS04 FE ? GO:0005576 ... P19134 11752780
    280 1jqf:A (1.85) BS02 FE ? GO:0005576 ... P02787 11570867
    281 1jw1:A (4.0) BS01 FE 3.4.21.- GO:0001503 ... Q29477 N/A
    282 1jw1:A (4.0) BS02 FE 3.4.21.- GO:0001503 ... Q29477 N/A
    283 1jyb:A (2.2) BS01 FE ? GO:0005506 ... P24931 12459910
    284 1jyb:A (2.2) BS02 FE ? GO:0005506 ... P24931 12459910
    285 1k6l:L (3.1) BS05 FE ? GO:0009772 ... P0C0Y8 11993994
    286 1k6l:M (3.1) BS03 FE ? GO:0009772 ... P0C0Y9 11993994
    287 1k6n:L (3.1) BS05 FE ? GO:0009772 ... P0C0Y8 11993994
    288 1k6n:M (3.1) BS03 FE ? GO:0009772 ... P0C0Y9 11993994
    289 1k6w:A (1.75) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 11812140
    290 1k70:A (1.8) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 11812140
    291 1kbp:A (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    292 1kbp:B (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    293 1kbp:C (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    294 1kbp:D (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    295 1kby:L (2.5) BS06 FE ? GO:0009772 ... P0C0Y8 16228547
    296 1kby:M (2.5) BS05 FE ? GO:0009772 ... P0C0Y9 16228547
    297 1kgn:A (1.85) BS01 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    298 1kgn:A (1.85) BS02 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    299 1kgn:B (1.85) BS01 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    300 1kgn:B (1.85) BS02 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    301 1kgn:C (1.85) BS01 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    302 1kgn:C (1.85) BS02 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    303 1kgn:D (1.85) BS01 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    304 1kgn:D (1.85) BS02 FE 1.17.4.1 GO:0004748 ... O69274 11802741
    305 1lct:A (2.0) BS01 FE 3.4.21.- GO:0005576 ... P02788 8371268
    306 1lfg:A (2.2) BS01 FE 3.4.21.- GO:0001503 ... P02788 15299793
    307 1lfg:A (2.2) BS02 FE 3.4.21.- GO:0001503 ... P02788 15299793
    308 1lkm:A (1.69) BS01 FE ? GO:0005506 ... P24931 12175244
    309 1lkm:A (1.69) BS02 FE ? GO:0005506 ... P24931 12175244
    310 1lkm:A (1.69) BS03 FE ? GO:0005506 ... P24931 12175244
    311 1lm4:A (1.45) BS01 FE 3.5.1.88 GO:0006412 ... P68826 12823970
    312 1lm4:B (1.45) BS01 FE 3.5.1.88 GO:0006412 ... P68826 12823970
    313 1lm6:A (1.75) BS01 FE 3.5.1.88 GO:0006412 ... Q9F2F0 12823970
    314 1lnb:E (1.8) BS02 FE 3.4.24.27 GO:0004222 ... P00800 8535232
    315 1lrm:A (2.1) BS01 FE 1.14.16.1 GO:0004497 ... P00439 N/A
    316 1ltv:A (2.0) BS01 FE 1.14.16.1 GO:0004497 ... P30967 12096915
    317 1ltz:A (1.4) BS01 FE 1.14.16.1 GO:0004497 ... P30967 12096915
    318 1m3x:L (2.55) BS06 FE ? GO:0009772 ... P0C0Y8 12167672
    319 1m3x:M (2.55) BS04 FE ? GO:0009772 ... P0C0Y9 12167672
    320 1m63:A (2.8) BS03 FE 3.1.3.16 GO:0016787 ... Q08209 12218175
    321 1m63:E (2.8) BS03 FE 3.1.3.16 GO:0016787 ... Q08209 12218175
    322 1ma1:A (2.6) BS01 FE 1.15.1.1 GO:0004784 ... P18868 N/A
    323 1ma1:B (2.6) BS01 FE 1.15.1.1 GO:0004784 ... P18868 N/A
    324 1ma1:C (2.6) BS01 FE 1.15.1.1 GO:0004784 ... P18868 N/A
    325 1ma1:D (2.6) BS01 FE 1.15.1.1 GO:0004784 ... P18868 N/A
    326 1ma1:E (2.6) BS01 FE 1.15.1.1 GO:0004784 ... P18868 N/A
    327 1ma1:F (2.6) BS01 FE 1.15.1.1 GO:0004784 ... P18868 N/A
    328 1mhy:D (2.0) BS01 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    329 1mhy:D (2.0) BS02 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    330 1mhz:D (2.7) BS01 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    331 1mhz:D (2.7) BS02 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    332 1mlw:A (1.71) BS01 FE 1.14.16.4 GO:0004497 ... P17752 12379098
    333 1mmm:A (2.2) BS01 FE 1.15.1.1 GO:0003677 ... P00448 N/A
    334 1mmm:B (2.2) BS01 FE 1.15.1.1 GO:0003677 ... P00448 N/A
    335 1mmo:D (2.2) BS01 FE 1.14.13.25 GO:0004497 ... P22869 8255292
    336 1mmo:D (2.2) BS02 FE 1.14.13.25 GO:0004497 ... P22869 8255292
    337 1mmo:E (2.2) BS01 FE 1.14.13.25 GO:0004497 ... P22869 8255292
    338 1mmo:E (2.2) BS02 FE 1.14.13.25 GO:0004497 ... P22869 8255292
    339 1moj:A (1.9) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    340 1moj:B (1.9) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    341 1moj:C (1.9) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    342 1moj:D (1.9) BS01 FE 1.16.-.- GO:0005737 ... Q9HMP7 15365182
    343 1mrp:A (1.6) BS01 FE ? GO:0006826 ... P35755 9360608
    344 1mty:D (1.7) BS01 FE 1.14.13.25 GO:0004497 ... P22869 9329079
    345 1mty:D (1.7) BS02 FE 1.14.13.25 GO:0004497 ... P22869 9329079
    346 1mty:E (1.7) BS01 FE 1.14.13.25 GO:0004497 ... P22869 9329079
    347 1mty:E (1.7) BS02 FE 1.14.13.25 GO:0004497 ... P22869 9329079
    348 1mxr:A (1.42) BS01 FE 1.17.4.1 GO:0004748 ... P69924 12624184
    349 1mxr:A (1.42) BS02 FE 1.17.4.1 GO:0004748 ... P69924 12624184
    350 1mxr:B (1.42) BS01 FE 1.17.4.1 GO:0004748 ... P69924 12624184
    351 1mxr:B (1.42) BS02 FE 1.17.4.1 GO:0004748 ... P69924 12624184
    352 1my6:A (1.6) BS01 FE 1.15.1.1 GO:0004784 ... Q8DIR2 12827458
    353 1my6:B (1.6) BS01 FE 1.15.1.1 GO:0004784 ... Q8DIR2 12827458
    354 1n04:A (2.8) BS02 FE ? GO:0005506 ... P02789 14501117
    355 1n04:A (2.8) BS03 FE ? GO:0005506 ... P02789 14501117
    356 1n76:A (3.4) BS01 FE 3.4.21.- GO:0001503 ... P02788 N/A
    357 1n76:A (3.4) BS02 FE 3.4.21.- GO:0001503 ... P02788 N/A
    358 1n7w:A (2.2) BS02 FE ? GO:0005576 ... P02787 12458193
    359 1n7x:A (2.1) BS02 FE ? GO:0005576 ... P02787 12458193
    360 1n84:A (2.05) BS02 FE ? GO:0005576 ... P02787 12458193
    361 1ndo:A (2.25) BS01 FE 1.14.12.12 GO:0005506 ... P0A110 9634695
    362 1ndo:C (2.25) BS01 FE 1.14.12.12 GO:0005506 ... P0A110 9634695
    363 1ndo:E (2.25) BS01 FE 1.14.12.12 GO:0005506 ... P0A110 9634695
    364 1nf6:A (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    365 1nf6:B (2.35) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    366 1nf6:C (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    367 1nf6:D (2.35) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    368 1nf6:E (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    369 1nf6:F (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    370 1nf6:G (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    371 1nf6:H (2.35) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    372 1nf6:I (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    373 1nf6:J (2.35) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    374 1nf6:K (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    375 1nf6:L (2.35) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    376 1nf6:M (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    377 1nf6:N (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    378 1nf6:O (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    379 1nf6:P (2.35) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    380 1nft:A (2.1) BS01 FE ? GO:0005576 ... P02789 10187803
    381 1nfv:A (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    382 1nfv:A (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    383 1nfv:B (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    384 1nfv:B (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    385 1nfv:C (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    386 1nfv:C (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    387 1nfv:D (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    388 1nfv:D (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    389 1nfv:E (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    390 1nfv:E (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    391 1nfv:F (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    392 1nfv:F (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    393 1nfv:G (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    394 1nfv:G (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    395 1nfv:H (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    396 1nfv:H (1.95) BS03 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    397 1nfv:I (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    398 1nfv:I (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    399 1nfv:J (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    400 1nfv:J (1.95) BS03 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218