Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3401 4qqx:C (3.34) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    3402 4qqx:C (3.34) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    3403 4qqx:E (3.34) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    3404 4qqx:E (3.34) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    3405 4qqx:G (3.34) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    3406 4qqx:G (3.34) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    3407 4qqy:A (3.12) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    3408 4qqy:A (3.12) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    3409 4qqy:C (3.12) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    3410 4qqy:C (3.12) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    3411 4qqy:E (3.12) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    3412 4qqy:E (3.12) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    3413 4qqy:G (3.12) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    3414 4qqy:G (3.12) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    3415 4qqz:A (2.93) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    3416 4qqz:A (2.93) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    3417 4qqz:C (2.93) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    3418 4qqz:C (2.93) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    3419 4qqz:E (2.93) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    3420 4qqz:E (2.93) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    3421 4qqz:G (2.93) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    3422 4qqz:G (2.93) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    3423 4qup:A (1.7) BS02 FE 1.-.-.- GO:0005506 ... Q92ZP9 N/A
    3424 4quq:A (2.266) BS02 FE 1.-.-.- GO:0005506 ... Q92ZP9 N/A
    3425 4qur:A (1.759) BS02 FE 1.-.-.- GO:0005506 ... Q92ZP9 N/A
    3426 4rap:A (2.881) BS01 FE 2.4.99.- GO:0016757 ... Q9S4K6 25310236
    3427 4rap:D (2.881) BS01 FE 2.4.99.- GO:0016757 ... Q9S4K6 25310236
    3428 4rap:E (2.881) BS01 FE 2.4.99.- GO:0016757 ... Q9S4K6 25310236
    3429 4rap:G (2.881) BS01 FE 2.4.99.- GO:0016757 ... Q9S4K6 25310236
    3430 4rap:K (2.881) BS01 FE 2.4.99.- GO:0016757 ... Q9S4K6 25310236
    3431 4rb4:A (3.88) BS01 FE N/A GO:0016757 ... N/A 25310236
    3432 4rb4:B (3.88) BS01 FE N/A GO:0016757 ... N/A 25310236
    3433 4rb4:C (3.88) BS01 FE N/A GO:0016757 ... N/A 25310236
    3434 4rb4:D (3.88) BS01 FE N/A GO:0016757 ... N/A 25310236
    3435 4rb4:E (3.88) BS01 FE N/A GO:0016757 ... N/A 25310236
    3436 4rb4:F (3.88) BS01 FE N/A GO:0016757 ... N/A 25310236
    3437 4rb4:G (3.88) BS01 FE N/A GO:0016757 ... N/A 25310236
    3438 4rb4:H (3.88) BS01 FE N/A GO:0016757 ... N/A 25310236
    3439 4rb4:I (3.88) BS01 FE N/A GO:0016757 ... N/A 25310236
    3440 4rb4:J (3.88) BS01 FE N/A GO:0016757 ... N/A 25310236
    3441 4rb4:K (3.88) BS01 FE N/A GO:0016757 ... N/A 25310236
    3442 4rb4:L (3.88) BS01 FE N/A GO:0016757 ... N/A 25310236
    3443 4rc8:A (1.71) BS01 FE 4.1.99.5 GO:0016829 ... Q54764 25482408
    3444 4rc8:A (1.71) BS02 FE 4.1.99.5 GO:0016829 ... Q54764 25482408
    3445 4rcr:L (2.8) BS05 FE ? GO:0009772 ... P0C0Y8 3186702
    3446 4rcr:M (2.8) BS04 FE ? GO:0009772 ... P0C0Y9 3186702
    3447 4reu:A (2.5) BS01 FE N/A GO:0006826 ... N/A 25305494
    3448 4reu:A (2.5) BS02 FE N/A GO:0006826 ... N/A 25305494
    3449 4reu:B (2.5) BS01 FE N/A GO:0006826 ... N/A 25305494
    3450 4reu:B (2.5) BS02 FE N/A GO:0006826 ... N/A 25305494
    3451 4reu:C (2.5) BS01 FE N/A GO:0006826 ... N/A 25305494
    3452 4reu:C (2.5) BS02 FE N/A GO:0006826 ... N/A 25305494
    3453 4reu:D (2.5) BS01 FE N/A GO:0006826 ... N/A 25305494
    3454 4reu:D (2.5) BS02 FE N/A GO:0006826 ... N/A 25305494
    3455 4reu:E (2.5) BS01 FE N/A GO:0006826 ... N/A 25305494
    3456 4reu:E (2.5) BS02 FE N/A GO:0006826 ... N/A 25305494
    3457 4reu:F (2.5) BS01 FE N/A GO:0006826 ... N/A 25305494
    3458 4reu:F (2.5) BS02 FE N/A GO:0006826 ... N/A 25305494
    3459 4ru3:A (1.172) BS01 FE ? GO:0046872 ... B7VFI6 N/A
    3460 4rxn:A (1.2) BS01 FE ? GO:0005506 ... P00268 7411618
    3461 4rzy:A (1.949) BS01 FE N/A N/A N/A 26154071
    3462 4rzy:A (1.949) BS02 FE N/A N/A N/A 26154071
    3463 4rzy:B (1.949) BS01 FE N/A N/A N/A 26154071
    3464 4rzy:B (1.949) BS02 FE N/A N/A N/A 26154071
    3465 4rzy:C (1.949) BS01 FE N/A N/A N/A 26154071
    3466 4rzy:C (1.949) BS02 FE N/A N/A N/A 26154071
    3467 4rzy:D (1.949) BS01 FE N/A N/A N/A 26154071
    3468 4rzy:D (1.949) BS02 FE N/A N/A N/A 26154071
    3469 4rzz:A (2.1) BS01 FE N/A N/A N/A 26154071
    3470 4rzz:A (2.1) BS02 FE N/A N/A N/A 26154071
    3471 4rzz:B (2.1) BS01 FE N/A N/A N/A 26154071
    3472 4rzz:B (2.1) BS02 FE N/A N/A N/A 26154071
    3473 4rzz:C (2.1) BS01 FE N/A N/A N/A 26154071
    3474 4rzz:C (2.1) BS02 FE N/A N/A N/A 26154071
    3475 4rzz:D (2.1) BS01 FE N/A N/A N/A 26154071
    3476 4rzz:D (2.1) BS02 FE N/A N/A N/A 26154071
    3477 4s00:A (2.099) BS01 FE N/A N/A N/A 26154071
    3478 4s00:A (2.099) BS02 FE N/A N/A N/A 26154071
    3479 4s00:B (2.099) BS01 FE N/A N/A N/A 26154071
    3480 4s00:B (2.099) BS02 FE N/A N/A N/A 26154071
    3481 4s00:C (2.099) BS01 FE N/A N/A N/A 26154071
    3482 4s00:C (2.099) BS02 FE N/A N/A N/A 26154071
    3483 4s00:D (2.099) BS01 FE N/A N/A N/A 26154071
    3484 4s00:D (2.099) BS02 FE N/A N/A N/A 26154071
    3485 4s01:A (2.1) BS01 FE N/A N/A N/A 26154071
    3486 4s01:A (2.1) BS02 FE N/A N/A N/A 26154071
    3487 4s01:B (2.1) BS01 FE N/A N/A N/A 26154071
    3488 4s01:B (2.1) BS02 FE N/A N/A N/A 26154071
    3489 4s01:C (2.1) BS01 FE N/A N/A N/A 26154071
    3490 4s01:C (2.1) BS02 FE N/A N/A N/A 26154071
    3491 4s01:D (2.1) BS01 FE N/A N/A N/A 26154071
    3492 4s01:D (2.1) BS02 FE N/A N/A N/A 26154071
    3493 4s1b:A (2.099) BS01 FE ? N/A Q8Y746 25583510
    3494 4s1b:A (2.099) BS02 FE ? N/A Q8Y746 25583510
    3495 4s1b:D (2.099) BS01 FE ? N/A Q8Y746 25583510
    3496 4s1b:D (2.099) BS02 FE ? N/A Q8Y746 25583510
    3497 4s1c:A (2.398) BS01 FE ? N/A Q8Y746 25583510
    3498 4s1c:A (2.398) BS02 FE ? N/A Q8Y746 25583510
    3499 4s1c:D (2.398) BS01 FE ? N/A Q8Y746 25583510
    3500 4s1c:D (2.398) BS02 FE ? N/A Q8Y746 25583510
    3501 4s36:A (1.46) BS01 FE ? N/A Q9S581 N/A
    3502 4tn7:A (2.2) BS02 FE 1.14.11.27 N/A P59997 25128496
    3503 4tn7:C (2.2) BS02 FE 1.14.11.27 N/A P59997 25128496
    3504 4tpu:A (2.355) BS02 FE 1.8.7.2 GO:0005506 ... Q8TQ92 25915695
    3505 4tw3:A (1.6) BS01 FE 4.1.99.5 GO:0016829 ... Q7V6D4 25222710
    3506 4tw3:A (1.6) BS02 FE 4.1.99.5 GO:0016829 ... Q7V6D4 25222710
    3507 4uam:A (1.8) BS01 FE N/A GO:0008270 ... N/A 25320022
    3508 4uam:B (1.8) BS01 FE N/A GO:0008270 ... N/A 25320022
    3509 4uam:C (1.8) BS01 FE N/A GO:0008270 ... N/A 25320022
    3510 4uam:D (1.8) BS01 FE N/A GO:0008270 ... N/A 25320022
    3511 4v06:A (2.63) BS01 FE 1.14.16.4 GO:0004497 ... Q8IWU9 N/A
    3512 4v06:B (2.63) BS01 FE 1.14.16.4 GO:0004497 ... Q8IWU9 N/A
    3513 4v0h:A (1.79) BS01 FE 3.1.27.- GO:0004521 ... A4D2B0 30507380
    3514 4v0h:A (1.79) BS02 FE 3.1.27.- GO:0004521 ... A4D2B0 30507380
    3515 4v0h:B (1.79) BS01 FE 3.1.27.- GO:0004521 ... A4D2B0 30507380
    3516 4v0h:B (1.79) BS02 FE 3.1.27.- GO:0004521 ... A4D2B0 30507380
    3517 4v0h:C (1.79) BS01 FE 3.1.27.- GO:0004521 ... A4D2B0 30507380
    3518 4v0h:C (1.79) BS02 FE 3.1.27.- GO:0004521 ... A4D2B0 30507380
    3519 4v0h:D (1.79) BS01 FE 3.1.27.- GO:0004521 ... A4D2B0 30507380
    3520 4v0h:D (1.79) BS02 FE 3.1.27.- GO:0004521 ... A4D2B0 30507380
    3521 4v1x:A (2.2) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    3522 4v1x:B (2.2) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    3523 4v1x:C (2.2) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    3524 4v1x:D (2.2) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    3525 4v1x:E (2.2) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    3526 4v1x:F (2.2) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    3527 4v1y:A (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    3528 4v1y:B (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    3529 4v1y:C (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    3530 4v1y:D (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    3531 4v1y:E (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    3532 4v1y:F (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    3533 4v1y:G (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    3534 4v1y:H (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    3535 4v1y:I (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    3536 4v1y:J (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    3537 4v1y:K (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    3538 4v1y:L (2.8) BS01 FE 3.8.1.8 GO:0005737 ... P72156 25760618
    3539 4v8k:AL (3.006) BS08 FE ? GO:0005515 ... D2Z0P3 24670637
    3540 4v8k:AM (3.006) BS05 FE ? GO:0005515 ... A8ASG6 24670637
    3541 4v8k:BL (3.006) BS08 FE ? GO:0005515 ... D2Z0P3 24670637
    3542 4v8k:BM (3.006) BS06 FE ? GO:0005515 ... A8ASG6 24670637
    3543 4wha:A (1.7) BS01 FE 1.13.11.12 GO:0005506 ... P08170 24884374
    3544 4who:B (1.83) BS01 FE 1.13.11.3 GO:0003824 ... P00437 25548185
    3545 4who:D (1.83) BS01 FE 1.13.11.3 GO:0003824 ... P00437 25548185
    3546 4who:F (1.83) BS01 FE 1.13.11.3 GO:0003824 ... P00437 25548185
    3547 4whp:B (1.541) BS01 FE 1.13.11.3 GO:0003824 ... P00437 25548185
    3548 4whp:D (1.541) BS01 FE 1.13.11.3 GO:0003824 ... P00437 25548185
    3549 4whp:F (1.541) BS01 FE 1.13.11.3 GO:0003824 ... P00437 25548185
    3550 4whq:B (1.78) BS01 FE 1.13.11.3 GO:0003824 ... P00437 25548185
    3551 4whq:D (1.78) BS01 FE 1.13.11.3 GO:0003824 ... P00437 25548185
    3552 4whq:F (1.78) BS01 FE 1.13.11.3 GO:0003824 ... P00437 25548185
    3553 4whr:B (1.58) BS02 FE 1.13.11.3 GO:0003824 ... P00437 25548185
    3554 4whr:D (1.58) BS01 FE 1.13.11.3 GO:0003824 ... P00437 25548185
    3555 4whr:F (1.58) BS03 FE 1.13.11.3 GO:0003824 ... P00437 25548185
    3556 4whs:B (1.35) BS01 FE 1.13.11.3 GO:0003824 ... P00437 25548185
    3557 4whs:D (1.35) BS01 FE 1.13.11.3 GO:0003824 ... P00437 25548185
    3558 4whs:F (1.35) BS01 FE 1.13.11.3 GO:0003824 ... P00437 25548185
    3559 4wn9:B (1.9) BS03 FE 1.18.6.1 GO:0005524 ... P11347 25710326
    3560 4wn9:B (1.9) BS04 FE 1.18.6.1 GO:0005524 ... P11347 25710326
    3561 4wn9:D (1.9) BS01 FE 1.18.6.1 GO:0005524 ... P11347 25710326
    3562 4wn9:D (1.9) BS02 FE 1.18.6.1 GO:0005524 ... P11347 25710326
    3563 4wna:B (2.0) BS02 FE 1.18.6.1 GO:0005524 ... P07329 25710326
    3564 4wna:B (2.0) BS03 FE 1.18.6.1 GO:0005524 ... P07329 25710326
    3565 4wna:D (2.0) BS01 FE 1.18.6.1 GO:0005524 ... P07329 25710326
    3566 4wna:D (2.0) BS02 FE 1.18.6.1 GO:0005524 ... P07329 25710326
    3567 4wq4:A (2.33) BS01 FE 2.3.1.234 GO:0000287 ... P05852 25578970
    3568 4wq4:B (2.33) BS01 FE 2.3.1.234 GO:0000287 ... P05852 25578970
    3569 4wq5:A (2.33) BS02 FE 2.3.1.234 GO:0000287 ... P05852 25578970
    3570 4wq5:B (2.33) BS02 FE 2.3.1.234 GO:0000287 ... P05852 25578970
    3571 4wwj:A (1.9) BS01 FE 1.-.-.- GO:0046872 ... Q4K8M0 25489112
    3572 4wwj:B (1.9) BS01 FE 1.-.-.- GO:0046872 ... Q4K8M0 25489112
    3573 4wwz:A (1.8) BS01 FE ? GO:0046872 ... Q4K8M0 25489112
    3574 4wwz:B (1.8) BS01 FE ? GO:0046872 ... Q4K8M0 25489112
    3575 4wx0:A (1.7) BS01 FE ? GO:0046872 ... Q4K8M0 25489112
    3576 4wx0:B (1.7) BS01 FE ? GO:0046872 ... Q4K8M0 25489112
    3577 4wza:B (1.8995) BS02 FE 1.18.6.1 GO:0005524 ... P07329 25522159
    3578 4wza:B (1.8995) BS03 FE 1.18.6.1 GO:0005524 ... P07329 25522159
    3579 4wza:D (1.8995) BS01 FE 1.18.6.1 GO:0005524 ... P07329 25522159
    3580 4wza:D (1.8995) BS03 FE 1.18.6.1 GO:0005524 ... P07329 25522159
    3581 4x1b:A (2.45) BS01 FE ? GO:0005515 ... P02787 25854324
    3582 4x33:A (1.45) BS01 FE ? N/A Q3E840 25604895
    3583 4x8b:A (1.7) BS01 FE 1.14.99.50 GO:0004497 ... G7CFI3 25597398
    3584 4x8b:B (1.7) BS01 FE 1.14.99.50 GO:0004497 ... G7CFI3 25597398
    3585 4x8e:A (1.6) BS02 FE 1.14.99.50 GO:0004497 ... G7CFI3 25597398
    3586 4x8e:B (1.6) BS02 FE 1.14.99.50 GO:0004497 ... G7CFI3 25597398
    3587 4xb9:A (1.798) BS01 FE ? GO:0009263 ... Q5KW80 26324712
    3588 4xb9:A (1.798) BS02 FE ? GO:0009263 ... Q5KW80 26324712
    3589 4xdo:A (1.97) BS02 FE 1.14.11.66 N/A Q9H3R0 25755264
    3590 4xdo:B (1.97) BS02 FE 1.14.11.66 N/A Q9H3R0 25755264
    3591 4xdp:A (2.07) BS02 FE 1.14.11.66 N/A Q9H3R0 25755264
    3592 4xdp:B (2.07) BS02 FE 1.14.11.66 N/A Q9H3R0 25755264
    3593 4xet:A (1.3) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    3594 4xez:A (1.2469) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    3595 4xf0:A (1.3994) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    3596 4xf1:A (1.55) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    3597 4xf3:A (1.55) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    3598 4xf4:A (1.3485) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    3599 4xf9:A (1.3) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    3600 4xfa:A (1.65) BS01 FE 1.13.11.20 GO:0005506 ... P21816 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218