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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3201 4jo0:A (2.17) BS01 FE 1.14.99.65 GO:0005737 ... F2RB80 23980641
    3202 4jo0:A (2.17) BS02 FE 1.14.99.65 GO:0005737 ... F2RB80 23980641
    3203 4jpy:A (2.13) BS01 FE 1.14.16.1 GO:0004497 ... P30967 23860686
    3204 4jyd:A (1.71) BS06 FE 1.8.-.- GO:0003824 ... Q9X0Z6 23596207
    3205 4jyy:A (2.101) BS01 FE 1.15.1.1 GO:0004784 ... Q186I6 N/A
    3206 4k9f:A (1.75) BS01 FE ? GO:0009055 ... P24297 24100333
    3207 4kbp:A (2.7) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    3208 4kbp:B (2.7) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    3209 4kbp:C (2.7) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    3210 4kbp:D (2.7) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    3211 4kib:A (2.0) BS03 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3212 4kib:B (2.0) BS03 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3213 4kic:A (2.43) BS03 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3214 4kic:B (2.43) BS04 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3215 4kif:A (2.5) BS02 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3216 4kif:B (2.5) BS02 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3217 4kig:A (2.4) BS02 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3218 4kig:B (2.4) BS03 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3219 4ku0:D (1.15) BS01 FE ? GO:0003796 ... P39234 N/A
    3220 4kvq:A (1.842) BS01 FE 4.1.99.5 GO:0016829 ... Q7V6D4 23757044
    3221 4kvq:A (1.842) BS02 FE 4.1.99.5 GO:0016829 ... Q7V6D4 23757044
    3222 4kvr:A (1.88) BS02 FE 4.1.99.5 GO:0016829 ... Q7V6D4 23757044
    3223 4kvr:A (1.88) BS03 FE 4.1.99.5 GO:0016829 ... Q7V6D4 23757044
    3224 4kvs:A (1.67) BS02 FE 4.1.99.5 GO:0016829 ... Q7V6D4 23757044
    3225 4kvs:A (1.67) BS03 FE 4.1.99.5 GO:0016829 ... Q7V6D4 23757044
    3226 4l2a:A (2.06) BS01 FE 1.15.1.1 GO:0004784 ... P84612 24440460
    3227 4l2a:B (2.06) BS01 FE 1.15.1.1 GO:0004784 ... P84612 24440460
    3228 4l2b:A (1.97) BS02 FE 1.15.1.1 GO:0004784 ... P84612 24440460
    3229 4l2b:B (1.97) BS02 FE 1.15.1.1 GO:0004784 ... P84612 24440460
    3230 4l2c:A (1.66) BS03 FE 1.15.1.1 GO:0004784 ... P84612 24440460
    3231 4l2c:B (1.66) BS02 FE 1.15.1.1 GO:0004784 ... P84612 24440460
    3232 4l2c:C (1.66) BS03 FE 1.15.1.1 GO:0004784 ... P84612 24440460
    3233 4l2c:D (1.66) BS03 FE 1.15.1.1 GO:0004784 ... P84612 24440460
    3234 4lwy:L (2.903) BS08 FE ? GO:0009772 ... P0C0Y8 N/A
    3235 4lwy:M (2.903) BS06 FE ? GO:0009772 ... P0C0Y9 N/A
    3236 4m1i:A (1.8) BS02 FE 1.17.4.1 GO:0004748 ... O84835 23924396
    3237 4m1i:B (1.8) BS01 FE 1.17.4.1 GO:0004748 ... O84835 23924396
    3238 4m1i:C (1.8) BS01 FE 1.17.4.1 GO:0004748 ... O84835 23924396
    3239 4m1i:D (1.8) BS01 FE 1.17.4.1 GO:0004748 ... O84835 23924396
    3240 4m25:A (1.84) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3241 4m25:A (1.84) BS02 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3242 4m25:B (1.84) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3243 4m25:B (1.84) BS02 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3244 4m25:C (1.84) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3245 4m25:C (1.84) BS02 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3246 4m25:D (1.84) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3247 4m25:D (1.84) BS02 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3248 4m26:A (2.02) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3249 4m26:A (2.02) BS02 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3250 4m26:B (2.02) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3251 4m26:C (2.02) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3252 4m26:D (2.02) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3253 4m27:A (2.35) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3254 4m27:B (2.35) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3255 4m27:C (2.35) BS02 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3256 4m27:D (2.35) BS02 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3257 4m2c:B (2.35) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3258 4m2c:C (2.35) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3259 4m2c:D (2.35) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3260 4m2e:B (2.06) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3261 4m2e:C (2.06) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3262 4m2e:D (2.06) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3263 4m2f:A (1.92) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3264 4m2f:B (1.92) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3265 4m2f:C (1.92) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3266 4m2f:D (1.92) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3267 4m2g:A (2.39) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3268 4m2g:B (2.39) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3269 4m2g:C (2.39) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3270 4m2g:D (2.39) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3271 4m2i:A (2.53) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3272 4m2i:B (2.53) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3273 4m2i:C (2.53) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3274 4m2i:D (2.53) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3275 4m6x:A (2.3) BS03 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3276 4m6x:B (2.3) BS03 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3277 4m6y:A (2.5) BS03 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3278 4m6y:B (2.5) BS03 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3279 4m71:A (2.21) BS03 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3280 4m71:B (2.21) BS03 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3281 4m72:A (2.1) BS03 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3282 4m72:B (2.1) BS03 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3283 4m73:A (2.0) BS03 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3284 4m73:B (2.0) BS04 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3285 4m74:A (2.2) BS03 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3286 4m74:B (2.2) BS04 FE 2.1.1.281 GO:0008168 ... Q643C8 24914966
    3287 4mcw:A (2.03) BS01 FE 3.1.4.1 GO:0000166 ... C0QQ26 24176013
    3288 4mcw:A (2.03) BS02 FE 3.1.4.1 GO:0000166 ... C0QQ26 24176013
    3289 4mcw:A (2.03) BS03 FE 3.1.4.1 GO:0000166 ... C0QQ26 24176013
    3290 4mcw:B (2.03) BS01 FE 3.1.4.1 GO:0000166 ... C0QQ26 24176013
    3291 4mcw:B (2.03) BS02 FE 3.1.4.1 GO:0000166 ... C0QQ26 24176013
    3292 4mcw:B (2.03) BS03 FE 3.1.4.1 GO:0000166 ... C0QQ26 24176013
    3293 4mdz:A (2.68) BS01 FE ? GO:0000166 ... C0QQ26 24176013
    3294 4mdz:A (2.68) BS02 FE ? GO:0000166 ... C0QQ26 24176013
    3295 4mdz:A (2.68) BS03 FE ? GO:0000166 ... C0QQ26 24176013
    3296 4mdz:B (2.68) BS01 FE ? GO:0000166 ... C0QQ26 24176013
    3297 4me4:A (2.55) BS01 FE ? GO:0000166 ... C0QQ26 24176013
    3298 4me4:A (2.55) BS02 FE ? GO:0000166 ... C0QQ26 24176013
    3299 4me4:A (2.55) BS03 FE ? GO:0000166 ... C0QQ26 24176013
    3300 4me4:B (2.55) BS01 FE ? GO:0000166 ... C0QQ26 24176013
    3301 4me4:B (2.55) BS02 FE ? GO:0000166 ... C0QQ26 24176013
    3302 4me4:B (2.55) BS03 FE ? GO:0000166 ... C0QQ26 24176013
    3303 4mhu:A (2.56) BS01 FE 1.14.11.55 GO:0005506 ... Q1GNW5 25172507
    3304 4mhu:B (2.56) BS01 FE 1.14.11.55 GO:0005506 ... Q1GNW5 25172507
    3305 4mlm:A (1.7) BS01 FE 1.13.11.78 GO:0016491 ... D0E8I5 24706911
    3306 4mlm:A (1.7) BS02 FE 1.13.11.78 GO:0016491 ... D0E8I5 24706911
    3307 4mlm:B (1.7) BS01 FE 1.13.11.78 GO:0016491 ... D0E8I5 24706911
    3308 4mlm:B (1.7) BS02 FE 1.13.11.78 GO:0016491 ... D0E8I5 24706911
    3309 4mln:A (2.1) BS01 FE 1.13.11.78 GO:0016491 ... D0E8I5 24706911
    3310 4mln:A (2.1) BS02 FE 1.13.11.78 GO:0016491 ... D0E8I5 24706911
    3311 4mln:B (2.1) BS01 FE 1.13.11.78 GO:0016491 ... D0E8I5 24706911
    3312 4mln:B (2.1) BS02 FE 1.13.11.78 GO:0016491 ... D0E8I5 24706911
    3313 4mn9:A (1.15) BS01 FE 1.16.3.1 GO:0004322 ... P07798 25849404
    3314 4mn9:A (1.15) BS02 FE 1.16.3.1 GO:0004322 ... P07798 25849404
    3315 4mn9:A (1.15) BS03 FE 1.16.3.1 GO:0004322 ... P07798 25849404
    3316 4mn9:A (1.15) BS04 FE 1.16.3.1 GO:0004322 ... P07798 25849404
    3317 4mn9:A (1.15) BS05 FE 1.16.3.1 GO:0004322 ... P07798 25849404
    3318 4n6p:A (1.4) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    3319 4n6w:A (1.85) BS01 FE 1.13.11.78 GO:0016491 ... D0E8I5 24198335
    3320 4n6w:A (1.85) BS02 FE 1.13.11.78 GO:0016491 ... D0E8I5 24198335
    3321 4n71:A (2.984) BS01 FE 1.13.11.78 GO:0016491 ... D0E8I5 24198335
    3322 4n71:A (2.984) BS02 FE 1.13.11.78 GO:0016491 ... D0E8I5 24198335
    3323 4n71:B (2.984) BS01 FE 1.13.11.78 GO:0016491 ... D0E8I5 24198335
    3324 4n71:B (2.984) BS02 FE 1.13.11.78 GO:0016491 ... D0E8I5 24198335
    3325 4n71:D (2.984) BS01 FE 1.13.11.78 GO:0016491 ... D0E8I5 24198335
    3326 4n71:D (2.984) BS02 FE 1.13.11.78 GO:0016491 ... D0E8I5 24198335
    3327 4n71:E (2.984) BS01 FE 1.13.11.78 GO:0016491 ... D0E8I5 24198335
    3328 4n71:E (2.984) BS02 FE 1.13.11.78 GO:0016491 ... D0E8I5 24198335
    3329 4n7k:L (2.85) BS06 FE ? GO:0009772 ... P0C0Y8 24316146
    3330 4n7k:M (2.85) BS05 FE ? GO:0009772 ... P0C0Y9 24316146
    3331 4n7l:L (2.85) BS07 FE ? GO:0009772 ... Q3J1A5 24316146
    3332 4n7l:M (2.85) BS06 FE ? GO:0009772 ... Q3J1A6 24316146
    3333 4nd8:B (2.0) BS02 FE 1.18.6.1 GO:0005524 ... P07329 24392967
    3334 4nd8:B (2.0) BS03 FE 1.18.6.1 GO:0005524 ... P07329 24392967
    3335 4nd8:D (2.0) BS01 FE 1.18.6.1 GO:0005524 ... P07329 24392967
    3336 4nd8:D (2.0) BS03 FE 1.18.6.1 GO:0005524 ... P07329 24392967
    3337 4ne0:A (2.17) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3338 4ne0:B (2.17) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3339 4ne0:C (2.17) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3340 4ne0:D (2.17) BS01 FE 1.14.11.41 GO:0005506 ... G9MBV2 24505011
    3341 4ned:A (2.1) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    3342 4nub:A (2.7) BS01 FE 1.14.11.47 GO:0005515 ... P27431 24530688
    3343 4ols:A (2.27) BS02 FE ? GO:0008745 ... D6QY02 24831957
    3344 4ols:D (2.27) BS03 FE ? GO:0008745 ... D6QY02 24831957
    3345 4or9:A (2.23) BS01 FE 3.1.3.16 GO:0001913 ... P16298 N/A
    3346 4ora:A (2.747) BS01 FE 3.1.3.16 GO:0001913 ... P16298 N/A
    3347 4orb:A (3.108) BS02 FE 3.1.3.16 GO:0000082 ... P63328 N/A
    3348 4orc:A (2.7) BS02 FE 3.1.3.16 GO:0001913 ... P16298 N/A
    3349 4oyn:A (1.43) BS01 FE 1.16.3.1 GO:0004322 ... P02794 26327381
    3350 4oyn:A (1.43) BS02 FE 1.16.3.1 GO:0004322 ... P02794 26327381
    3351 4oyn:A (1.43) BS03 FE 1.16.3.1 GO:0004322 ... P02794 26327381
    3352 4oyn:A (1.43) BS04 FE 1.16.3.1 GO:0004322 ... P02794 26327381
    3353 4p1b:A (2.05) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 25248368
    3354 4p1b:A (2.05) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 25248368
    3355 4p1b:D (2.05) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 25248368
    3356 4p1b:D (2.05) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 25248368
    3357 4p1c:A (2.4) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 25248368
    3358 4p1c:A (2.4) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 25248368
    3359 4p1c:D (2.4) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 25248368
    3360 4p1c:D (2.4) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 25248368
    3361 4p9g:A (2.2) BS01 FE 1.13.11.41 GO:0046872 ... Q9REI7 25195757
    3362 4pah:A (2.0) BS01 FE 1.14.16.1 GO:0004497 ... P00439 9843368
    3363 4pg0:A (1.9) BS01 FE 4.1.99.5 GO:0016829 ... Q7V6D4 25222710
    3364 4pg0:A (1.9) BS02 FE 4.1.99.5 GO:0016829 ... Q7V6D4 25222710
    3365 4pg1:A (1.7) BS01 FE 4.1.99.5 GO:0016829 ... Q7V6D4 25222710
    3366 4pg1:A (1.7) BS02 FE 4.1.99.5 GO:0016829 ... Q7V6D4 25222710
    3367 4pgi:A (2.08) BS01 FE 4.1.99.5 GO:0016829 ... Q7V6D4 25222710
    3368 4pgi:A (2.08) BS02 FE 4.1.99.5 GO:0016829 ... Q7V6D4 25222710
    3369 4pgk:A (2.17) BS01 FE 4.1.99.5 GO:0016829 ... Q7V6D4 25222710
    3370 4pgk:A (2.17) BS02 FE 4.1.99.5 GO:0016829 ... Q7V6D4 25222710
    3371 4pix:A (1.35) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    3372 4piy:A (1.6) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    3373 4piz:A (1.4) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    3374 4pj0:A (2.437) BS03 FE 1.10.3.9 GO:0005506 ... P0A444 25438669
    3375 4pj0:D (2.437) BS01 FE 1.10.3.9 GO:0005506 ... Q8CM25 25438669
    3376 4pj0:a (2.437) BS03 FE 1.10.3.9 GO:0005506 ... P0A444 25438669
    3377 4pj0:d (2.437) BS01 FE 1.10.3.9 GO:0005506 ... Q8CM25 25438669
    3378 4pjy:A (1.501) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    3379 4q5o:A (2.64) BS01 FE 1.14.11.55 GO:0005506 ... Q1GNW5 25172507
    3380 4q5o:B (2.64) BS01 FE 1.14.11.55 GO:0005506 ... Q1GNW5 25172507
    3381 4qck:A (2.46) BS01 FE 1.14.15.30 GO:0004497 ... P71875 25049233
    3382 4qdc:A (1.9) BS02 FE 1.14.15.30 GO:0004497 ... F1CMY8 25049233
    3383 4qgn:A (3.05) BS01 FE 1.13.11.53
    1.13.11.54
    GO:0005506 ... Q9BV57 29193386
    3384 4qlw:B (2.0) BS01 FE ? GO:0005507 ... P00282 25082811
    3385 4qlw:D (2.0) BS01 FE ? GO:0005507 ... P00282 25082811
    3386 4qm8:A (2.82) BS01 FE 1.13.11.20 GO:0005506 ... O32085 25307852
    3387 4qm8:B (2.82) BS01 FE 1.13.11.20 GO:0005506 ... O32085 25307852
    3388 4qm9:A (2.3) BS01 FE 1.13.11.20 GO:0005506 ... O32085 25307852
    3389 4qm9:B (2.3) BS01 FE 1.13.11.20 GO:0005506 ... O32085 25307852
    3390 4qma:A (1.65) BS01 FE ? GO:0005506 ... Q46R41 25307852
    3391 4qqw:A (2.664) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    3392 4qqw:A (2.664) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    3393 4qqw:C (2.664) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    3394 4qqw:C (2.664) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    3395 4qqw:E (2.664) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    3396 4qqw:E (2.664) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    3397 4qqw:G (2.664) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    3398 4qqw:G (2.664) BS03 FE ? GO:0000027 ... Q47PJ0 25132177
    3399 4qqx:A (3.34) BS02 FE ? GO:0000027 ... Q47PJ0 25132177
    3400 4qqx:A (3.34) BS03 FE ? GO:0000027 ... Q47PJ0 25132177

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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