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BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3001 4dt2:D (2.7) BS02 FE 3.1.3.2 GO:0003993 ... P80366 22943065
    3002 4dvh:A (2.23) BS01 FE 1.15.1.1 GO:0004784 ... Q4DCQ3 24616096
    3003 4dvh:B (2.23) BS01 FE 1.15.1.1 GO:0004784 ... Q4DCQ3 24616096
    3004 4dxu:A (1.46) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    3005 4e4h:A (2.28) BS01 FE 1.14.11.27
    1.14.11.79    		 N/A Q9H6W3 N/A
    3006 4e4h:B (2.28) BS01 FE 1.14.11.27
    1.14.11.79    		 N/A Q9H6W3 N/A
    3007 4e4h:C (2.28) BS01 FE 1.14.11.27
    1.14.11.79    		 N/A Q9H6W3 N/A
    3008 4e4h:D (2.28) BS01 FE 1.14.11.27
    1.14.11.79    		 N/A Q9H6W3 N/A
    3009 4elr:A (2.502) BS01 FE ? N/A Q5SHV2 N/A
    3010 4elr:B (2.502) BS01 FE ? N/A Q5SHV2 N/A
    3011 4erg:A (2.789) BS01 FE ? GO:0005737 ... Q83V25 22746257
    3012 4erg:B (2.789) BS01 FE ? GO:0005737 ... Q83V25 22746257
    3013 4ewa:A (2.47) BS01 FE 1.13.11.24 GO:0003712 ... O00625 23716661
    3014 4f0l:A (2.05) BS01 FE ? GO:0005829 ... Q2YIL4 N/A
    3015 4f0l:B (2.05) BS01 FE ? GO:0005829 ... Q2YIL4 N/A
    3016 4f9j:A (2.103) BS01 FE 3.5.1.- GO:0004553 ... P75906 22810235
    3017 4f9j:B (2.103) BS01 FE 3.5.1.- GO:0004553 ... P75906 22810235
    3018 4fag:A (2.5) BS01 FE 1.13.11.4 GO:0046872 ... Q67FT0 22960182
    3019 4fah:A (2.5) BS01 FE 1.13.11.4 GO:0046872 ... Q67FT0 22960182
    3020 4fbf:A (2.7) BS01 FE 1.13.11.4 GO:0046872 ... Q67FT0 22960182
    3021 4ffk:A (1.76) BS01 FE 1.15.1.1 GO:0004784 ... D9Q0R7 N/A
    3022 4fim:A (1.8) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    3023 4fjp:A (1.68) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    3024 4fm4:A (2.384) BS01 FE 4.2.1.84 GO:0003824 ... J9PBS0 22713452
    3025 4fm4:C (2.384) BS01 FE 4.2.1.84 GO:0003824 ... J9PBS0 22713452
    3026 4fm4:E (2.384) BS01 FE 4.2.1.84 GO:0003824 ... J9PBS0 22713452
    3027 4fm4:G (2.384) BS01 FE 4.2.1.84 GO:0003824 ... J9PBS0 22713452
    3028 4fm4:I (2.384) BS01 FE 4.2.1.84 GO:0003824 ... J9PBS0 22713452
    3029 4fm4:K (2.384) BS01 FE 4.2.1.84 GO:0003824 ... J9PBS0 22713452
    3030 4fm4:M (2.384) BS01 FE 4.2.1.84 GO:0003824 ... J9PBS0 22713452
    3031 4fm4:O (2.384) BS01 FE 4.2.1.84 GO:0003824 ... J9PBS0 22713452
    3032 4for:A (1.58) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    3033 4g2z:A (1.9) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    3034 4g77:A (1.98) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    3035 4g8h:A (1.88) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    3036 4gam:A (2.902) BS01 FE 1.14.13.25 GO:0004497 ... P22869 23395959
    3037 4gam:A (2.902) BS02 FE 1.14.13.25 GO:0004497 ... P22869 23395959
    3038 4gam:F (2.902) BS01 FE 1.14.13.25 GO:0004497 ... P22869 23395959
    3039 4gam:F (2.902) BS02 FE 1.14.13.25 GO:0004497 ... P22869 23395959
    3040 4gam:K (2.902) BS01 FE 1.14.13.25 GO:0004497 ... P22869 23395959
    3041 4gam:K (2.902) BS02 FE 1.14.13.25 GO:0004497 ... P22869 23395959
    3042 4gam:P (2.902) BS01 FE 1.14.13.25 GO:0004497 ... P22869 23395959
    3043 4gam:P (2.902) BS02 FE 1.14.13.25 GO:0004497 ... P22869 23395959
    3044 4grk:A (1.68) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    3045 4gul:A (1.8) BS01 FE 1.13.11.24 GO:0003712 ... O00625 23716661
    3046 4h0w:A (2.4) BS01 FE ? GO:0005515 ... P02787 23256035
    3047 4h99:L (2.97) BS06 FE ? GO:0009772 ... P0C0Y8 N/A
    3048 4h99:M (2.97) BS04 FE ? GO:0009772 ... P0C0Y9 N/A
    3049 4h9l:L (2.77) BS06 FE ? GO:0009772 ... P0C0Y8 N/A
    3050 4h9l:M (2.77) BS04 FE ? GO:0009772 ... P0C0Y9 N/A
    3051 4h9t:A (2.097) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 23461395
    3052 4h9t:B (2.097) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 23461395
    3053 4h9u:A (2.099) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 23461395
    3054 4h9u:B (2.099) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 23461395
    3055 4h9v:A (1.971) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 23461395
    3056 4h9v:B (1.971) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 23461395
    3057 4h9x:A (2.201) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 23461395
    3058 4h9x:B (2.201) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 23461395
    3059 4h9y:A (2.085) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 23461395
    3060 4h9y:B (2.085) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 23461395
    3061 4h9z:A (2.6) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 23461395
    3062 4h9z:B (2.6) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 23461395
    3063 4ha0:A (1.902) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 23461395
    3064 4ha0:B (1.902) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 23461395
    3065 4hbh:L (2.93) BS07 FE ? GO:0009772 ... P0C0Y8 N/A
    3066 4hbh:M (2.93) BS04 FE ? GO:0009772 ... P0C0Y9 N/A
    3067 4hbj:L (2.74) BS06 FE ? GO:0009772 ... P0C0Y8 N/A
    3068 4hbj:M (2.74) BS04 FE ? GO:0009772 ... P0C0Y9 N/A
    3069 4hjl:A (1.5) BS02 FE 1.14.12.12 GO:0005506 ... P0A111 28989720
    3070 4hkv:A (1.65) BS02 FE 1.14.12.12 GO:0005506 ... P0A111 28989720
    3071 4hm0:A (1.8) BS01 FE 1.14.12.12 GO:0005506 ... P0A111 28989720
    3072 4hm1:A (1.5) BS02 FE 1.14.12.12 GO:0005506 ... P0A111 N/A
    3073 4hm2:A (1.6) BS02 FE 1.14.12.12 GO:0005506 ... P0A111 28989720
    3074 4hm3:A (1.5) BS02 FE 1.14.12.12 GO:0005506 ... P0A111 28989720
    3075 4hm4:A (1.5) BS02 FE 1.14.12.12 GO:0005506 ... P0A111 28989720
    3076 4hm5:A (1.5) BS02 FE 1.14.12.12 GO:0005506 ... P0A111 28989720
    3077 4hm6:A (1.499) BS02 FE 1.14.12.12 GO:0005506 ... P0A111 28989720
    3078 4hm7:A (1.5) BS02 FE 1.14.12.12 GO:0005506 ... P0A111 28989720
    3079 4hm8:A (1.3) BS02 FE 1.14.12.12 GO:0005506 ... P0A111 28989720
    3080 4hr0:A (1.896) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 24101498
    3081 4huz:A (2.6) BS01 FE 1.13.11.- GO:0046872 ... Q9ZBB0 23489289
    3082 4hvr:A (2.7) BS01 FE 1.13.11.6 GO:0000334 ... Q1LCS4 N/A
    3083 4hvr:A (2.7) BS02 FE 1.13.11.6 GO:0000334 ... Q1LCS4 N/A
    3084 4ies:A (1.4) BS01 FE 1.13.11.20 GO:0005506 ... P21816 23747973
    3085 4igo:A (2.4) BS01 FE 1.14.11.67 N/A Q53WJ1 23357881
    3086 4igp:A (3.003) BS01 FE 1.14.11.67 N/A Q53WJ1 23357881
    3087 4igq:A (2.35) BS02 FE 1.14.11.67 N/A Q53WJ1 23357881
    3088 4ilt:A (2.55) BS01 FE ? GO:0003824 ... G2NEL6 23653358
    3089 4ilt:B (2.55) BS01 FE ? GO:0003824 ... G2NEL6 23653358
    3090 4ilt:C (2.55) BS01 FE ? GO:0003824 ... G2NEL6 23653358
    3091 4ilt:D (2.55) BS01 FE ? GO:0003824 ... G2NEL6 23653358
    3092 4ilv:A (2.06) BS01 FE ? GO:0003824 ... G2NEL6 23653358
    3093 4ilv:B (2.06) BS01 FE ? GO:0003824 ... G2NEL6 23653358
    3094 4in5:L (2.2) BS07 FE ? GO:0009772 ... Q3J1A5 23480277
    3095 4in5:M (2.2) BS06 FE ? GO:0009772 ... Q3J1A6 23480277
    3096 4in6:L (2.7) BS06 FE ? GO:0009772 ... Q3J1A5 23480277
    3097 4in6:M (2.7) BS05 FE ? GO:0009772 ... Q3J1A6 23480277
    3098 4in7:L (2.85) BS05 FE ? GO:0009772 ... P0C0Y8 23480277
    3099 4in7:M (2.85) BS04 FE ? GO:0009772 ... P0C0Y9 23480277
    3100 4isp:A (2.2) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3101 4isp:A (2.2) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3102 4isp:A (2.2) BS03 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3103 4isp:A (2.2) BS04 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3104 4isp:B (2.2) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3105 4isp:B (2.2) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3106 4isp:B (2.2) BS03 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3107 4isp:B (2.2) BS04 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3108 4isp:B (2.2) BS05 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3109 4isp:C (2.2) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3110 4isp:C (2.2) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3111 4isp:C (2.2) BS03 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3112 4isp:C (2.2) BS04 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3113 4isp:D (2.2) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3114 4isp:D (2.2) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3115 4isp:D (2.2) BS03 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3116 4isp:D (2.2) BS04 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3117 4isp:D (2.2) BS05 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3118 4isp:E (2.2) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3119 4isp:E (2.2) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3120 4isp:E (2.2) BS03 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3121 4isp:E (2.2) BS04 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3122 4isp:F (2.2) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3123 4isp:F (2.2) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3124 4isp:F (2.2) BS03 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3125 4isp:F (2.2) BS04 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3126 4isp:G (2.2) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3127 4isp:G (2.2) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3128 4isp:G (2.2) BS03 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3129 4isp:G (2.2) BS04 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3130 4isp:H (2.2) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3131 4isp:H (2.2) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3132 4isp:H (2.2) BS03 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3133 4itt:B (2.1) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3134 4itt:C (2.1) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3135 4itt:D (2.1) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3136 4itt:E (2.1) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3137 4itt:G (2.1) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3138 4itt:H (2.1) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3139 4itw:A (2.0) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3140 4itw:B (2.0) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3141 4itw:C (2.0) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3142 4itw:D (2.0) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3143 4itw:E (2.0) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3144 4itw:F (2.0) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3145 4itw:G (2.0) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3146 4itw:H (2.0) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3147 4iwj:A (1.95) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3148 4iwj:A (1.95) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3149 4iwj:B (1.95) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3150 4iwj:B (1.95) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3151 4iwj:C (1.95) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3152 4iwj:C (1.95) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3153 4iwj:D (1.95) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3154 4iwj:D (1.95) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3155 4iwj:E (1.95) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3156 4iwj:E (1.95) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3157 4iwj:F (1.95) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3158 4iwj:F (1.95) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3159 4iwj:G (1.95) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3160 4iwj:G (1.95) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3161 4iwj:H (1.95) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3162 4iwj:H (1.95) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3163 4iwk:A (1.65) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3164 4iwk:A (1.65) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3165 4iwk:A (1.65) BS03 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3166 4iwk:A (1.65) BS04 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3167 4iwk:B (1.65) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3168 4iwk:B (1.65) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3169 4iwk:B (1.65) BS03 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3170 4iwk:C (1.65) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3171 4iwk:C (1.65) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3172 4iwk:C (1.65) BS03 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3173 4iwk:C (1.65) BS04 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3174 4iwk:D (1.65) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3175 4iwk:D (1.65) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3176 4iwk:D (1.65) BS03 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3177 4iwk:D (1.65) BS04 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3178 4iwk:E (1.65) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3179 4iwk:E (1.65) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3180 4iwk:E (1.65) BS03 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3181 4iwk:F (1.65) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3182 4iwk:F (1.65) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3183 4iwk:F (1.65) BS03 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3184 4iwk:F (1.65) BS04 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3185 4ixk:A (2.1) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3186 4ixk:B (2.1) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3187 4ixk:C (2.1) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3188 4ixk:D (2.1) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3189 4ixk:E (2.1) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3190 4ixk:F (2.1) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3191 4ixk:G (2.1) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3192 4ixk:H (2.1) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 23548912
    3193 4j5i:A (2.6) BS01 FE 1.14.11.17 GO:0000908 ... A0QZ23 25613812
    3194 4j5i:B (2.6) BS01 FE 1.14.11.17 GO:0000908 ... A0QZ23 25613812
    3195 4j5i:C (2.6) BS01 FE 1.14.11.17 GO:0000908 ... A0QZ23 25613812
    3196 4j5i:D (2.6) BS01 FE 1.14.11.17 GO:0000908 ... A0QZ23 25613812
    3197 4j5i:E (2.6) BS01 FE 1.14.11.17 GO:0000908 ... A0QZ23 25613812
    3198 4j5i:F (2.6) BS01 FE 1.14.11.17 GO:0000908 ... A0QZ23 25613812
    3199 4j5i:G (2.6) BS01 FE 1.14.11.17 GO:0000908 ... A0QZ23 25613812
    3200 4j5i:H (2.6) BS01 FE 1.14.11.17 GO:0000908 ... A0QZ23 25613812
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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