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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2401 3qgk:C (3.0) BS02 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2402 3qgk:F (3.0) BS01 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2403 3qgk:F (3.0) BS02 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2404 3qgk:I (3.0) BS01 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2405 3qgk:I (3.0) BS02 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2406 3qgk:L (3.0) BS01 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2407 3qgk:L (3.0) BS02 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2408 3qgk:O (3.0) BS01 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2409 3qgk:O (3.0) BS02 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2410 3qgk:R (3.0) BS01 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2411 3qgk:R (3.0) BS02 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2412 3qhb:A (1.2) BS01 FE ? GO:0008199 ... P48329 21596985
    2413 3qhb:A (1.2) BS02 FE ? GO:0008199 ... P48329 21596985
    2414 3qhb:B (1.2) BS01 FE ? GO:0008199 ... P48329 21596985
    2415 3qhb:B (1.2) BS02 FE ? GO:0008199 ... P48329 21596985
    2416 3qhc:A (1.25) BS01 FE ? GO:0008199 ... P48329 21872605
    2417 3qhc:A (1.25) BS02 FE ? GO:0008199 ... P48329 21872605
    2418 3qhc:A (1.25) BS03 FE ? GO:0008199 ... P48329 21872605
    2419 3qhc:B (1.25) BS01 FE ? GO:0008199 ... P48329 21872605
    2420 3qhc:B (1.25) BS02 FE ? GO:0008199 ... P48329 21872605
    2421 3qhc:B (1.25) BS03 FE ? GO:0008199 ... P48329 21872605
    2422 3qr7:A (0.94) BS02 FE ? N/A P31340 22325780
    2423 3qr7:B (0.94) BS02 FE ? N/A P31340 22325780
    2424 3qvd:A (2.0) BS05 FE ? GO:0005506 ... Q9UWP7 21647777
    2425 3qvd:B (2.0) BS02 FE ? GO:0005506 ... Q9UWP7 21647777
    2426 3qvd:C (2.0) BS05 FE ? GO:0005506 ... Q9UWP7 21647777
    2427 3qvd:D (2.0) BS05 FE ? GO:0005506 ... Q9UWP7 21647777
    2428 3qvd:E (2.0) BS05 FE ? GO:0005506 ... Q9UWP7 21647777
    2429 3qvd:F (2.0) BS05 FE ? GO:0005506 ... Q9UWP7 21647777
    2430 3qvd:G (2.0) BS05 FE ? GO:0005506 ... Q9UWP7 21647777
    2431 3qvd:H (2.0) BS02 FE ? GO:0005506 ... Q9UWP7 21647777
    2432 3qxb:A (1.9) BS01 FE ? GO:0016853 ... Q2RUN2 N/A
    2433 3qxb:A (1.9) BS04 FE ? GO:0016853 ... Q2RUN2 N/A
    2434 3qxb:B (1.9) BS01 FE ? GO:0016853 ... Q2RUN2 N/A
    2435 3qxb:B (1.9) BS04 FE ? GO:0016853 ... Q2RUN2 N/A
    2436 3qxb:C (1.9) BS01 FE ? GO:0016853 ... Q2RUN2 N/A
    2437 3qxb:C (1.9) BS04 FE ? GO:0016853 ... Q2RUN2 N/A
    2438 3qxb:D (1.9) BS01 FE ? GO:0016853 ... Q2RUN2 N/A
    2439 3qxb:D (1.9) BS04 FE ? GO:0016853 ... Q2RUN2 N/A
    2440 3qy6:A (1.8) BS01 FE 3.1.3.48 GO:0004721 ... P96717 21605684
    2441 3qy6:A (1.8) BS02 FE 3.1.3.48 GO:0004721 ... P96717 21605684
    2442 3qy7:A (1.62) BS01 FE 3.1.3.48 GO:0004721 ... P96717 21605684
    2443 3qy7:A (1.62) BS02 FE 3.1.3.48 GO:0004721 ... P96717 21605684
    2444 3qy8:A (2.0) BS01 FE 3.1.3.48 GO:0000271 ... Q9AHD4 21605684
    2445 3qy8:A (2.0) BS02 FE 3.1.3.48 GO:0000271 ... Q9AHD4 21605684
    2446 3qyt:A (2.8) BS01 FE ? GO:0005515 ... P02787 23256035
    2447 3qyt:A (2.8) BS03 FE ? GO:0005515 ... P02787 23256035
    2448 3qzb:A (1.1) BS01 FE 1.15.1.2 GO:0005506 ... Q9WZC6 N/A
    2449 3r1j:A (2.05) BS01 FE 1.14.11.17 GO:0000908 ... A0A0H2ZSG9 25613812
    2450 3r1j:B (2.05) BS01 FE 1.14.11.17 GO:0000908 ... A0A0H2ZSG9 25613812
    2451 3r2l:A (1.85) BS01 FE 1.16.3.1 GO:0004322 ... Q9HWF9 21574546
    2452 3r2l:A (1.85) BS02 FE 1.16.3.1 GO:0004322 ... Q9HWF9 21574546
    2453 3r2l:A (1.85) BS03 FE 1.16.3.1 GO:0004322 ... Q9HWF9 21574546
    2454 3r2l:A (1.85) BS04 FE 1.16.3.1 GO:0004322 ... Q9HWF9 21574546
    2455 3r2l:A (1.85) BS05 FE 1.16.3.1 GO:0004322 ... Q9HWF9 21574546
    2456 3r2m:A (1.8) BS01 FE 1.16.3.1 GO:0004322 ... Q9HWF9 21574546
    2457 3r2m:A (1.8) BS02 FE 1.16.3.1 GO:0004322 ... Q9HWF9 21574546
    2458 3r2m:A (1.8) BS03 FE 1.16.3.1 GO:0004322 ... Q9HWF9 21574546
    2459 3r2r:A (1.65) BS01 FE 1.16.3.1 GO:0004322 ... Q9HWF9 21574546
    2460 3r2r:A (1.65) BS02 FE 1.16.3.1 GO:0004322 ... Q9HWF9 21574546
    2461 3r2r:A (1.65) BS03 FE 1.16.3.1 GO:0004322 ... Q9HWF9 21574546
    2462 3r2s:A (2.1) BS01 FE 1.16.3.1 GO:0004322 ... Q9HWF9 21574546
    2463 3r2s:A (2.1) BS02 FE 1.16.3.1 GO:0004322 ... Q9HWF9 21574546
    2464 3r2s:A (2.1) BS03 FE 1.16.3.1 GO:0004322 ... Q9HWF9 21574546
    2465 3r2s:A (2.1) BS04 FE 1.16.3.1 GO:0004322 ... Q9HWF9 21574546
    2466 3r2u:A (2.1) BS01 FE ? GO:0006749 ... A0A0H2X0Y8 N/A
    2467 3r2u:B (2.1) BS01 FE ? GO:0006749 ... A0A0H2X0Y8 N/A
    2468 3r2u:C (2.1) BS01 FE ? GO:0006749 ... A0A0H2X0Y8 N/A
    2469 3r2u:D (2.1) BS01 FE ? GO:0006749 ... A0A0H2X0Y8 N/A
    2470 3rbc:A (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2471 3rbc:A (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2472 3rbc:B (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2473 3rbc:B (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2474 3rbc:C (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2475 3rbc:C (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2476 3rbc:D (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2477 3rbc:D (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2478 3rbc:E (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2479 3rbc:E (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2480 3rbc:F (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2481 3rbc:F (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2482 3rbc:G (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2483 3rbc:G (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2484 3rbc:H (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2485 3rbc:H (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2486 3rbc:I (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2487 3rbc:I (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2488 3rbc:J (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2489 3rbc:J (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2490 3rbc:K (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2491 3rbc:K (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2492 3rbc:L (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2493 3rbc:L (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2494 3rbc:M (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2495 3rbc:M (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2496 3rbc:N (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2497 3rbc:N (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2498 3rbc:O (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2499 3rbc:O (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2500 3rbc:P (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2501 3rbc:P (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2502 3rbc:Q (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2503 3rbc:Q (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2504 3rbc:R (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2505 3rbc:R (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2506 3rbc:S (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2507 3rbc:S (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2508 3rbc:T (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2509 3rbc:T (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2510 3rbc:U (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2511 3rbc:U (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2512 3rbc:V (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2513 3rbc:V (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2514 3rbc:W (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2515 3rbc:W (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2516 3rbc:X (2.7) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2517 3rbc:X (2.7) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2518 3rf7:A (2.12) BS02 FE ? GO:0000166 ... Q12MB1 N/A
    2519 3rgd:A (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2520 3rgd:A (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2521 3rgd:B (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2522 3rgd:B (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2523 3rgd:C (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2524 3rgd:C (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2525 3rgd:D (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2526 3rgd:D (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2527 3rgd:E (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2528 3rgd:E (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2529 3rgd:F (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2530 3rgd:F (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2531 3rgd:G (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2532 3rgd:G (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2533 3rgd:H (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2534 3rgd:H (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2535 3rgd:I (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2536 3rgd:I (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2537 3rgd:J (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2538 3rgd:J (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2539 3rgd:K (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2540 3rgd:K (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2541 3rgd:L (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2542 3rgd:L (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2543 3rgd:M (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2544 3rgd:M (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2545 3rgd:N (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2546 3rgd:N (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2547 3rgd:O (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2548 3rgd:O (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2549 3rgd:P (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2550 3rgd:P (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2551 3rgd:Q (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2552 3rgd:Q (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2553 3rgd:R (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2554 3rgd:R (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2555 3rgd:S (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2556 3rgd:S (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2557 3rgd:T (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2558 3rgd:T (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2559 3rgd:U (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2560 3rgd:U (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2561 3rgd:V (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2562 3rgd:V (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2563 3rgd:W (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2564 3rgd:W (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2565 3rgd:X (2.89) BS01 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2566 3rgd:X (2.89) BS02 FE 1.16.3.1 GO:0004322 ... P07798 22424302
    2567 3rgy:A (2.0) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    2568 3ri7:A (2.1) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 22264099
    2569 3ri7:A (2.1) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 22264099
    2570 3rmk:A (1.95) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 22264099
    2571 3rmk:A (1.95) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 22264099
    2572 3rmk:D (1.95) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 22264099
    2573 3rmk:D (1.95) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 22264099
    2574 3rn4:A (1.79) BS01 FE 1.15.1.1 GO:0004784 ... P00447 22102021
    2575 3rn9:A (2.8) BS01 FE 1.14.-.- GO:0004497 ... Q6IV66 21859951
    2576 3rn9:A (2.8) BS02 FE 1.14.-.- GO:0004497 ... Q6IV66 21859951
    2577 3rna:A (3.0) BS01 FE 1.14.-.- GO:0004497 ... Q6IV66 21859951
    2578 3rna:A (3.0) BS02 FE 1.14.-.- GO:0004497 ... Q6IV66 21859951
    2579 3rnb:A (2.64) BS01 FE 1.14.-.- GO:0004497 ... Q6IV66 21859951
    2580 3rnb:A (2.64) BS02 FE 1.14.-.- GO:0004497 ... Q6IV66 21859951
    2581 3rnc:A (2.74) BS01 FE 1.14.-.- GO:0004497 ... Q6IV66 21859951
    2582 3rnc:A (2.74) BS02 FE 1.14.-.- GO:0004497 ... Q6IV66 21859951
    2583 3rne:A (2.5) BS01 FE 1.14.-.- GO:0004497 ... Q6IV66 21859951
    2584 3rne:A (2.5) BS02 FE 1.14.-.- GO:0004497 ... Q6IV66 21859951
    2585 3rnf:A (2.2) BS01 FE 1.14.-.- GO:0004497 ... Q6IV66 21859951
    2586 3rnf:A (2.2) BS02 FE 1.14.-.- GO:0004497 ... Q6IV66 21859951
    2587 3rng:A (2.81) BS01 FE 1.14.-.- GO:0004497 ... Q6IV66 21859951
    2588 3rng:A (2.81) BS02 FE 1.14.-.- GO:0004497 ... Q6IV66 21859951
    2589 3ryg:A (1.75) BS01 FE ? GO:0009055 ... P24297 22194331
    2590 3rz6:A (1.75) BS01 FE ? GO:0009055 ... P24297 22194331
    2591 3rzt:A (1.7504) BS01 FE ? GO:0009055 ... P24297 22194331
    2592 3s6b:A (1.95) BS01 FE 3.4.11.18 GO:0006508 ... Q8IJP2 N/A
    2593 3s9l:C (3.22) BS01 FE ? GO:0005515 ... P02787 21788477
    2594 3s9l:D (3.22) BS01 FE ? GO:0005515 ... P02787 21788477
    2595 3s9m:C (3.32) BS02 FE ? GO:0005515 ... P02787 21788477
    2596 3s9m:D (3.32) BS02 FE ? GO:0005515 ... P02787 21788477
    2597 3s9n:C (3.25) BS01 FE ? GO:0005515 ... P02787 21788477
    2598 3s9n:D (3.25) BS01 FE ? GO:0005515 ... P02787 21788477
    2599 3sao:B (1.8) BS03 FE ? GO:0002062 ... P21760 22153502
    2600 3sdf:A (2.1) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218