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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2201 3n1x:A (2.4) BS02 FE ? GO:0004497 ... Q6IV66 20839885
    2202 3n1y:A (2.1) BS01 FE ? GO:0004497 ... Q6IV66 20839885
    2203 3n1y:A (2.1) BS02 FE ? GO:0004497 ... Q6IV66 20839885
    2204 3n1z:A (2.9) BS01 FE ? GO:0004497 ... Q6IV66 20839885
    2205 3n1z:A (2.9) BS02 FE ? GO:0004497 ... Q6IV66 20839885
    2206 3n20:A (1.9) BS01 FE ? GO:0004497 ... Q6IV66 20839885
    2207 3n20:A (1.9) BS02 FE ? GO:0004497 ... Q6IV66 20839885
    2208 3n9t:A (2.0) BS01 FE 1.13.11.37 GO:0003824 ... C6FI44 N/A
    2209 3nnf:A (2.201) BS01 FE ? N/A Q6DNF2 20660778
    2210 3nnl:A (2.883) BS01 FE ? N/A Q6DNF2 20660778
    2211 3nnl:B (2.883) BS01 FE ? N/A Q6DNF2 20660778
    2212 3nte:A (1.95) BS02 FE ? GO:0016032 ... Q77YG1 21146540
    2213 3nte:A (1.95) BS03 FE ? GO:0016032 ... Q77YG1 21146540
    2214 3nte:A (1.95) BS04 FE ? GO:0016032 ... Q77YG1 21146540
    2215 3nte:A (1.95) BS05 FE ? GO:0016032 ... Q77YG1 21146540
    2216 3nte:B (1.95) BS02 FE ? GO:0016032 ... Q77YG1 21146540
    2217 3nte:B (1.95) BS03 FE ? GO:0016032 ... Q77YG1 21146540
    2218 3nte:B (1.95) BS04 FE ? GO:0016032 ... Q77YG1 21146540
    2219 3nte:B (1.95) BS05 FE ? GO:0016032 ... Q77YG1 21146540
    2220 3nte:B (1.95) BS06 FE ? GO:0016032 ... Q77YG1 21146540
    2221 3o0f:A (1.94) BS03 FE ? GO:0000166 ... A1A2L3 21538547
    2222 3o0f:A (1.94) BS04 FE ? GO:0000166 ... A1A2L3 21538547
    2223 3o0r:B (2.7) BS03 FE 1.7.2.5 GO:0004129 ... Q59647 21109633
    2224 3o1s:A (1.58) BS03 FE 1.14.11.33 GO:0005515 ... P05050 21068844
    2225 3o1t:A (1.48) BS03 FE 1.14.11.33 GO:0005515 ... P05050 21068844
    2226 3o1u:A (1.54) BS03 FE 1.14.11.33 GO:0005515 ... P05050 21068844
    2227 3o1v:A (1.9) BS03 FE 1.14.11.33 GO:0005515 ... P05050 21068844
    2228 3o32:A (2.85) BS01 FE 1.13.11.- GO:0003824 ... O67987 23261399
    2229 3o32:B (2.85) BS01 FE 1.13.11.- GO:0003824 ... O67987 23261399
    2230 3o5u:A (2.35) BS01 FE 1.13.11.- GO:0003824 ... O67987 23261399
    2231 3o5u:B (2.35) BS01 FE 1.13.11.- GO:0003824 ... O67987 23261399
    2232 3o6j:A (2.9) BS01 FE 1.13.11.- GO:0003824 ... O67987 23261399
    2233 3o6j:B (2.9) BS01 FE 1.13.11.- GO:0003824 ... O67987 23261399
    2234 3o6r:A (2.6) BS01 FE 1.13.11.- GO:0003824 ... O67987 23261399
    2235 3o6r:B (2.6) BS01 FE 1.13.11.- GO:0003824 ... O67987 23261399
    2236 3o97:A (2.68) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    2237 3od7:A (1.801) BS01 FE ? GO:0006826 ... P35755 20799927
    2238 3odb:A (1.62) BS01 FE ? GO:0006826 ... P35755 20799927
    2239 3ogh:A (1.65) BS02 FE ? GO:0046872 ... A0A0H2V857 N/A
    2240 3ogh:B (1.65) BS02 FE ? GO:0046872 ... A0A0H2V857 N/A
    2241 3ojg:A (1.6) BS02 FE 3.5.-.- GO:0008270 ... Q5KZU5 20980257
    2242 3pah:A (2.0) BS01 FE 1.14.16.1 GO:0004497 ... P00439 9843368
    2243 3pca:M (2.2) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2244 3pca:N (2.2) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2245 3pca:O (2.2) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2246 3pca:P (2.2) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2247 3pca:Q (2.2) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2248 3pca:R (2.2) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2249 3pcb:M (2.19) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2250 3pcb:N (2.19) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2251 3pcb:O (2.19) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2252 3pcb:P (2.19) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2253 3pcb:Q (2.19) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2254 3pcb:R (2.19) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2255 3pcc:M (1.98) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2256 3pcc:N (1.98) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2257 3pcc:O (1.98) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2258 3pcc:P (1.98) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2259 3pcc:Q (1.98) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2260 3pcc:R (1.98) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2261 3pcd:M (2.1) BS02 FE 1.13.11.3 GO:0003824 ... P00437 9485360
    2262 3pcd:N (2.1) BS02 FE 1.13.11.3 GO:0003824 ... P00437 9485360
    2263 3pcd:O (2.1) BS02 FE 1.13.11.3 GO:0003824 ... P00437 9485360
    2264 3pcd:P (2.1) BS02 FE 1.13.11.3 GO:0003824 ... P00437 9485360
    2265 3pcd:Q (2.1) BS02 FE 1.13.11.3 GO:0003824 ... P00437 9485360
    2266 3pcd:R (2.1) BS02 FE 1.13.11.3 GO:0003824 ... P00437 9485360
    2267 3pce:M (2.06) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2268 3pce:N (2.06) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2269 3pce:O (2.06) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2270 3pce:P (2.06) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2271 3pce:Q (2.06) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2272 3pce:R (2.06) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2273 3pcf:M (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2274 3pcf:N (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2275 3pcf:O (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2276 3pcf:P (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2277 3pcf:Q (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2278 3pcf:R (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2279 3pcg:M (1.96) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2280 3pcg:N (1.96) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2281 3pcg:O (1.96) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2282 3pcg:P (1.96) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2283 3pcg:Q (1.96) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2284 3pcg:R (1.96) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2285 3pch:M (2.05) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2286 3pch:N (2.05) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2287 3pch:O (2.05) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2288 3pch:P (2.05) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2289 3pch:Q (2.05) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2290 3pch:R (2.05) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2291 3pci:M (2.21) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2292 3pci:N (2.21) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2293 3pci:O (2.21) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2294 3pci:P (2.21) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2295 3pci:Q (2.21) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2296 3pci:R (2.21) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254599
    2297 3pcj:M (2.13) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2298 3pcj:N (2.13) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2299 3pcj:O (2.13) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2300 3pcj:P (2.13) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2301 3pcj:Q (2.13) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2302 3pcj:R (2.13) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2303 3pck:M (2.13) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2304 3pck:N (2.13) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2305 3pck:O (2.13) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2306 3pck:P (2.13) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2307 3pck:Q (2.13) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2308 3pck:R (2.13) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2309 3pcl:M (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2310 3pcl:N (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2311 3pcl:O (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2312 3pcl:P (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2313 3pcl:Q (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2314 3pcl:R (2.15) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2315 3pcm:M (2.25) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2316 3pcm:N (2.25) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2317 3pcm:O (2.25) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2318 3pcm:P (2.25) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2319 3pcm:Q (2.25) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2320 3pcm:R (2.25) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9254600
    2321 3pcn:M (2.4) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9298971
    2322 3pcn:N (2.4) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9298971
    2323 3pcn:O (2.4) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9298971
    2324 3pcn:P (2.4) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9298971
    2325 3pcn:Q (2.4) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9298971
    2326 3pcn:R (2.4) BS01 FE 1.13.11.3 GO:0003824 ... P00437 9298971
    2327 3per:A (2.1) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2328 3per:A (2.1) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2329 3per:B (2.1) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2330 3per:B (2.1) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2331 3pf7:A (1.903) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2332 3pf7:A (1.903) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2333 3pf7:B (1.903) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2334 3pf7:B (1.903) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2335 3pm5:A (2.3) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2336 3pm5:A (2.3) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2337 3pm5:B (2.3) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2338 3pm5:B (2.3) BS03 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2339 3pm5:C (2.3) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2340 3pm5:C (2.3) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2341 3pm5:D (2.3) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2342 3pm5:D (2.3) BS03 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2343 3pqh:A (1.295) BS01 FE ? N/A I7HXF9 22325780
    2344 3pqh:B (1.295) BS01 FE ? N/A I7HXF9 22325780
    2345 3pqi:A (2.642) BS01 FE ? GO:0046872 ... I7HXF9 22325780
    2346 3pu8:A (1.943) BS02 FE 1.14.11.- N/A O75151 21167174
    2347 3pu8:B (1.943) BS02 FE 1.14.11.- N/A O75151 21167174
    2348 3q14:A (1.75) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 22264099
    2349 3q14:A (1.75) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 22264099
    2350 3q1g:A (2.5) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2351 3q1g:A (2.5) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2352 3q1g:B (2.5) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2353 3q1g:B (2.5) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2354 3q1g:C (2.5) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2355 3q1g:C (2.5) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2356 3q1g:D (2.5) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2357 3q1g:D (2.5) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    2358 3q2a:A (1.99) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 22264099
    2359 3q2a:A (1.99) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 22264099
    2360 3q3m:A (1.748) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 22264099
    2361 3q3m:A (1.748) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 22264099
    2362 3q3m:D (1.748) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 22264099
    2363 3q3m:D (1.748) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 22264099
    2364 3q3n:A (1.84) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 22264099
    2365 3q3n:A (1.84) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 22264099
    2366 3q3o:A (1.95) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 22264099
    2367 3q3o:A (1.95) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 22264099
    2368 3qb9:A (2.11) BS01 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2369 3qb9:A (2.11) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2370 3qb9:B (2.11) BS01 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2371 3qb9:B (2.11) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2372 3qb9:C (2.11) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2373 3qb9:C (2.11) BS03 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2374 3qb9:D (2.11) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2375 3qb9:D (2.11) BS03 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2376 3qb9:E (2.11) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2377 3qb9:E (2.11) BS03 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2378 3qb9:F (2.11) BS02 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2379 3qb9:F (2.11) BS03 FE 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    2380 3qc3:A (2.2) BS02 FE 5.1.3.1 GO:0004750 ... Q96AT9 N/A
    2381 3qc3:B (2.2) BS02 FE 5.1.3.1 GO:0004750 ... Q96AT9 N/A
    2382 3qfm:A (1.9) BS02 FE ? GO:0000166 ... Q8DNX4 N/A
    2383 3qfm:B (1.9) BS02 FE ? GO:0000166 ... Q8DNX4 N/A
    2384 3qfn:A (2.31) BS02 FE ? GO:0000166 ... Q8DNX4 N/A
    2385 3qfn:B (2.31) BS02 FE ? GO:0000166 ... Q8DNX4 N/A
    2386 3qfo:A (2.2) BS02 FE ? GO:0000166 ... Q8DNX4 N/A
    2387 3qfo:B (2.2) BS02 FE ? GO:0000166 ... Q8DNX4 N/A
    2388 3qga:C (3.0) BS01 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2389 3qga:C (3.0) BS02 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2390 3qga:F (3.0) BS01 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2391 3qga:F (3.0) BS02 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2392 3qga:I (3.0) BS01 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2393 3qga:I (3.0) BS02 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2394 3qga:L (3.0) BS01 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2395 3qga:L (3.0) BS02 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2396 3qga:O (3.0) BS01 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2397 3qga:O (3.0) BS02 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2398 3qga:R (3.0) BS01 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2399 3qga:R (3.0) BS02 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    2400 3qgk:C (3.0) BS01 FE 3.5.1.5 GO:0005515 ... D3UJ80 21788478
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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