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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 7576 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1801 3bvk:A (1.5) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1802 3bvk:B (1.5) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1803 3bvk:B (1.5) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1804 3bvk:C (1.5) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1805 3bvk:C (1.5) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1806 3bvk:D (1.5) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1807 3bvk:D (1.5) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1808 3bvk:E (1.5) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1809 3bvk:E (1.5) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1810 3bvk:F (1.5) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1811 3bvk:F (1.5) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1812 3bvl:A (1.8) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1813 3bvl:A (1.8) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1814 3bvl:B (1.8) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1815 3bvl:B (1.8) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1816 3bvl:C (1.8) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1817 3bvl:C (1.8) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1818 3bvl:D (1.8) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1819 3bvl:D (1.8) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1820 3bvl:E (1.8) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1821 3bvl:E (1.8) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1822 3bvl:F (1.8) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1823 3bvl:F (1.8) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 N/A
    1824 3bvq:A (2.8) BS01 FE ? GO:0004519 ... Q2I6W2 18400177
    1825 3bvq:B (2.8) BS01 FE ? GO:0004519 ... Q2I6W2 18400177
    1826 3bww:A (2.2) BS01 FE ? N/A Q0I408 N/A
    1827 3bww:A (2.2) BS02 FE ? N/A Q0I408 N/A
    1828 3bxd:A (2.0) BS01 FE 1.13.99.1 GO:0004033 ... Q9QXN5 18364358
    1829 3bxd:A (2.0) BS02 FE 1.13.99.1 GO:0004033 ... Q9QXN5 18364358
    1830 3bxv:A (2.7) BS01 FE 1.13.11.55 GO:0046872 ... Q977W3 18329378
    1831 3c25:A (2.5) BS03 FE ? GO:0004519 ... Q2I6W2 18400177
    1832 3c25:B (2.5) BS03 FE ? GO:0004519 ... Q2I6W2 18400177
    1833 3ccg:A (1.5) BS01 FE 3.6.1.41 GO:0016787 ... Q97JL1 N/A
    1834 3ccg:A (1.5) BS02 FE 3.6.1.41 GO:0016787 ... Q97JL1 N/A
    1835 3cei:A (2.4) BS01 FE 1.15.1.1 GO:0004784 ... P43312 18502213
    1836 3cei:B (2.4) BS01 FE 1.15.1.1 GO:0004784 ... P43312 18502213
    1837 3cf4:A (2.0) BS03 FE 1.2.7.4 GO:0003824 ... Q46G04 18621675
    1838 3cfl:A (2.25) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1839 3ci8:A (2.4) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1840 3cmd:A (2.7) BS01 FE 3.5.1.88 GO:0006412 ... Q842S4 18831047
    1841 3cmd:B (2.7) BS01 FE 3.5.1.88 GO:0006412 ... Q842S4 18831047
    1842 3cpx:A (2.39) BS01 FE N/A N/A N/A N/A
    1843 3cpx:A (2.39) BS02 FE N/A N/A N/A N/A
    1844 3cpx:B (2.39) BS01 FE N/A N/A N/A N/A
    1845 3cpx:B (2.39) BS02 FE N/A N/A N/A N/A
    1846 3cpx:C (2.39) BS01 FE N/A N/A N/A N/A
    1847 3cpx:C (2.39) BS02 FE N/A N/A N/A N/A
    1848 3cr9:A (3.49) BS02 FE 3.4.21.- GO:0001503 ... O77811 N/A
    1849 3cr9:A (3.49) BS03 FE 3.4.21.- GO:0001503 ... O77811 N/A
    1850 3crb:A (2.6) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1851 3d19:A (2.3) BS02 FE N/A N/A N/A N/A
    1852 3d19:B (2.3) BS02 FE N/A N/A N/A N/A
    1853 3d19:C (2.3) BS02 FE N/A N/A N/A N/A
    1854 3d19:D (2.3) BS02 FE N/A N/A N/A N/A
    1855 3d19:E (2.3) BS02 FE N/A N/A N/A N/A
    1856 3d19:F (2.3) BS02 FE N/A N/A N/A N/A
    1857 3d3l:A (2.6) BS01 FE 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-    		 GO:0005506 ... P18054 N/A
    1858 3d3l:B (2.6) BS01 FE 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-    		 GO:0005506 ... P18054 N/A
    1859 3dby:A (2.1) BS01 FE N/A N/A N/A N/A
    1860 3dby:A (2.1) BS02 FE N/A N/A N/A N/A
    1861 3dby:B (2.1) BS01 FE N/A N/A N/A N/A
    1862 3dby:B (2.1) BS02 FE N/A N/A N/A N/A
    1863 3dby:C (2.1) BS01 FE N/A N/A N/A N/A
    1864 3dby:C (2.1) BS02 FE N/A N/A N/A N/A
    1865 3dby:D (2.1) BS01 FE N/A N/A N/A N/A
    1866 3dby:D (2.1) BS02 FE N/A N/A N/A N/A
    1867 3dby:E (2.1) BS01 FE N/A N/A N/A N/A
    1868 3dby:E (2.1) BS02 FE N/A N/A N/A N/A
    1869 3dby:F (2.1) BS01 FE N/A N/A N/A N/A
    1870 3dby:F (2.1) BS02 FE N/A N/A N/A N/A
    1871 3dby:G (2.1) BS01 FE N/A N/A N/A N/A
    1872 3dby:G (2.1) BS02 FE N/A N/A N/A N/A
    1873 3dby:H (2.1) BS01 FE N/A N/A N/A N/A
    1874 3dby:H (2.1) BS02 FE N/A N/A N/A N/A
    1875 3dby:I (2.1) BS01 FE N/A N/A N/A N/A
    1876 3dby:I (2.1) BS02 FE N/A N/A N/A N/A
    1877 3dby:J (2.1) BS01 FE N/A N/A N/A N/A
    1878 3dby:J (2.1) BS02 FE N/A N/A N/A N/A
    1879 3dby:K (2.1) BS01 FE N/A N/A N/A N/A
    1880 3dby:K (2.1) BS02 FE N/A N/A N/A N/A
    1881 3dby:L (2.1) BS01 FE N/A N/A N/A N/A
    1882 3dby:L (2.1) BS02 FE N/A N/A N/A N/A
    1883 3dby:M (2.1) BS01 FE N/A N/A N/A N/A
    1884 3dby:M (2.1) BS02 FE N/A N/A N/A N/A
    1885 3dby:N (2.1) BS01 FE N/A N/A N/A N/A
    1886 3dby:N (2.1) BS02 FE N/A N/A N/A N/A
    1887 3dby:O (2.1) BS01 FE N/A N/A N/A N/A
    1888 3dby:O (2.1) BS02 FE N/A N/A N/A N/A
    1889 3dby:P (2.1) BS01 FE N/A N/A N/A N/A
    1890 3dby:P (2.1) BS02 FE N/A N/A N/A N/A
    1891 3dby:Q (2.1) BS01 FE N/A N/A N/A N/A
    1892 3dby:Q (2.1) BS02 FE N/A N/A N/A N/A
    1893 3dby:R (2.1) BS01 FE N/A N/A N/A N/A
    1894 3dby:R (2.1) BS02 FE N/A N/A N/A N/A
    1895 3dby:S (2.1) BS01 FE N/A N/A N/A N/A
    1896 3dby:S (2.1) BS02 FE N/A N/A N/A N/A
    1897 3dby:T (2.1) BS01 FE N/A N/A N/A N/A
    1898 3dby:T (2.1) BS02 FE N/A N/A N/A N/A
    1899 3dcp:A (2.1) BS02 FE N/A GO:0000105 ... N/A N/A
    1900 3dcp:A (2.1) BS03 FE N/A GO:0000105 ... N/A N/A
    1901 3dcp:B (2.1) BS02 FE N/A GO:0000105 ... N/A N/A
    1902 3dcp:B (2.1) BS03 FE N/A GO:0000105 ... N/A N/A
    1903 3dcp:C (2.1) BS02 FE N/A GO:0000105 ... N/A N/A
    1904 3dcp:C (2.1) BS03 FE N/A GO:0000105 ... N/A N/A
    1905 3dh8:A (1.8) BS01 FE 3.1.2.32 GO:0016787 ... P20581 19788310
    1906 3dh8:A (1.8) BS02 FE 3.1.2.32 GO:0016787 ... P20581 19788310
    1907 3dhg:A (1.85) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 19033467
    1908 3dhg:A (1.85) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 19033467
    1909 3dhg:D (1.85) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 19033467
    1910 3dhg:D (1.85) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 19033467
    1911 3dhh:A (1.94) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 19033467
    1912 3dhh:A (1.94) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 19033467
    1913 3dhi:A (1.68) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 19033467
    1914 3dhi:A (1.68) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 19033467
    1915 3dsy:L (3.0) BS05 FE ? GO:0009772 ... P0C0Y8 N/A
    1916 3dsy:M (3.0) BS03 FE ? GO:0009772 ... P0C0Y9 N/A
    1917 3dta:L (3.2) BS05 FE ? GO:0009772 ... P0C0Y8 N/A
    1918 3dta:M (3.2) BS03 FE ? GO:0009772 ... P0C0Y9 N/A
    1919 3dtr:L (3.1) BS07 FE ? GO:0009772 ... P0C0Y8 N/A
    1920 3dtr:M (3.1) BS06 FE ? GO:0009772 ... P0C0Y9 N/A
    1921 3dts:L (3.1) BS07 FE ? GO:0009772 ... P0C0Y8 N/A
    1922 3dts:M (3.1) BS06 FE ? GO:0009772 ... P0C0Y9 N/A
    1923 3du2:L (3.1) BS07 FE ? GO:0009772 ... P0C0Y8 N/A
    1924 3du2:M (3.1) BS06 FE ? GO:0009772 ... P0C0Y9 N/A
    1925 3du3:L (2.8) BS07 FE ? GO:0009772 ... P0C0Y8 N/A
    1926 3du3:M (2.8) BS06 FE ? GO:0009772 ... P0C0Y9 N/A
    1927 3duq:L (2.7) BS07 FE ? GO:0009772 ... P0C0Y8 N/A
    1928 3duq:M (2.7) BS06 FE ? GO:0009772 ... P0C0Y9 N/A
    1929 3e0f:A (2.4) BS02 FE ? GO:0000166 ... A1A2L3 21538547
    1930 3e0f:A (2.4) BS03 FE ? GO:0000166 ... A1A2L3 21538547
    1931 3e13:X (1.6) BS01 FE ? GO:0030288 ... Q0PBW4 N/A
    1932 3e2t:A (1.9) BS01 FE 1.14.16.4 GO:0004497 ... P70080 18937498
    1933 3e6s:A (1.95) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 19037243
    1934 3e6s:A (1.95) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 19037243
    1935 3e6s:A (1.95) BS03 FE 1.16.3.1 GO:0006826 ... B6DMH6 19037243
    1936 3e6s:A (1.95) BS04 FE 1.16.3.1 GO:0006826 ... B6DMH6 19037243
    1937 3e6s:B (1.95) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 19037243
    1938 3e6s:B (1.95) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 19037243
    1939 3e6s:C (1.95) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 19037243
    1940 3e6s:C (1.95) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 19037243
    1941 3e6s:D (1.95) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 19037243
    1942 3e6s:D (1.95) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 19037243
    1943 3e6s:E (1.95) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 19037243
    1944 3e6s:E (1.95) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 19037243
    1945 3e6s:E (1.95) BS03 FE 1.16.3.1 GO:0006826 ... B6DMH6 19037243
    1946 3e6s:F (1.95) BS01 FE 1.16.3.1 GO:0006826 ... B6DMH6 19037243
    1947 3e6s:F (1.95) BS02 FE 1.16.3.1 GO:0006826 ... B6DMH6 19037243
    1948 3e74:A (2.1) BS01 FE 3.5.2.5 GO:0000256 ... P77671 19248789
    1949 3e74:A (2.1) BS02 FE 3.5.2.5 GO:0000256 ... P77671 19248789
    1950 3e74:B (2.1) BS01 FE 3.5.2.5 GO:0000256 ... P77671 19248789
    1951 3e74:B (2.1) BS02 FE 3.5.2.5 GO:0000256 ... P77671 19248789
    1952 3e74:C (2.1) BS01 FE 3.5.2.5 GO:0000256 ... P77671 19248789
    1953 3e74:C (2.1) BS02 FE 3.5.2.5 GO:0000256 ... P77671 19248789
    1954 3e74:D (2.1) BS01 FE 3.5.2.5 GO:0000256 ... P77671 19248789
    1955 3e74:D (2.1) BS02 FE 3.5.2.5 GO:0000256 ... P77671 19248789
    1956 3e9x:A (2.7) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    1957 3ee4:A (1.9) BS02 FE 1.-.-.- GO:0005506 ... P9WH69 19321420
    1958 3egm:A (2.1) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 19427319
    1959 3egm:A (2.1) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 19427319
    1960 3egm:B (2.1) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 19427319
    1961 3egm:B (2.1) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 19427319
    1962 3egm:C (2.1) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 19427319
    1963 3egm:C (2.1) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 19427319
    1964 3egm:D (2.1) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 19427319
    1965 3egm:D (2.1) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 19427319
    1966 3egm:E (2.1) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 19427319
    1967 3egm:E (2.1) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 19427319
    1968 3egm:F (2.1) BS01 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 19427319
    1969 3egm:F (2.1) BS02 FE 1.16.3.2 GO:0004322 ... Q9ZLI1 19427319
    1970 3emr:A (1.85) BS01 FE 1.14.11.55 GO:0005506 ... Q2TDY4 20498719
    1971 3eqe:A (2.82) BS01 FE 1.13.11.20 GO:0005506 ... O32085 N/A
    1972 3eqe:B (2.82) BS01 FE 1.13.11.20 GO:0005506 ... O32085 N/A
    1973 3esf:A (2.01) BS01 FE 1.15.1.1 GO:0004784 ... Q2KN30 19384994
    1974 3esf:B (2.01) BS01 FE 1.15.1.1 GO:0004784 ... Q2KN30 19384994
    1975 3esf:C (2.01) BS01 FE 1.15.1.1 GO:0004784 ... Q2KN30 19384994
    1976 3esf:D (2.01) BS01 FE 1.15.1.1 GO:0004784 ... Q2KN30 19384994
    1977 3f11:A (2.0) BS01 FE ? GO:0005886 ... P72827 17626019
    1978 3fe5:A (2.51) BS01 FE 1.13.11.6 GO:0000334 ... Q0VCA8 19226621
    1979 3fgs:A (1.8) BS02 FE ? GO:0005576 ... P02787 19219998
    1980 3fkg:A (1.81) BS07 FE 1.11.1.16 GO:0000302 ... O94753 N/A
    1981 3fm1:A (1.78) BS05 FE 1.11.1.16 GO:0000302 ... O94753 N/A
    1982 3fm1:A (1.78) BS07 FE 1.11.1.16 GO:0000302 ... O94753 N/A
    1983 3fm3:A (2.18) BS01 FE 3.4.11.18 GO:0004177 ... Q8SR45 19660503
    1984 3fm3:A (2.18) BS02 FE 3.4.11.18 GO:0004177 ... Q8SR45 19660503
    1985 3fm3:B (2.18) BS01 FE 3.4.11.18 GO:0004177 ... Q8SR45 19660503
    1986 3fm3:B (2.18) BS02 FE 3.4.11.18 GO:0004177 ... Q8SR45 19660503
    1987 3fm4:A (2.11) BS06 FE 1.11.1.16 GO:0000302 ... O94753 N/A
    1988 3fm6:A (1.13) BS05 FE 1.11.1.16 GO:0000302 ... O94753 N/A
    1989 3fm6:A (1.13) BS08 FE 1.11.1.16 GO:0000302 ... O94753 N/A
    1990 3fmq:A (2.5) BS01 FE 3.4.11.18 GO:0004177 ... Q8SR45 19660503
    1991 3fmq:A (2.5) BS02 FE 3.4.11.18 GO:0004177 ... Q8SR45 19660503
    1992 3fmq:B (2.5) BS01 FE 3.4.11.18 GO:0004177 ... Q8SR45 19660503
    1993 3fmq:B (2.5) BS02 FE 3.4.11.18 GO:0004177 ... Q8SR45 19660503
    1994 3fmr:A (2.89) BS01 FE 3.4.11.18 GO:0004177 ... Q8SR45 19660503
    1995 3fmr:A (2.89) BS02 FE 3.4.11.18 GO:0004177 ... Q8SR45 19660503
    1996 3fmr:B (2.89) BS01 FE 3.4.11.18 GO:0004177 ... Q8SR45 19660503
    1997 3fmr:B (2.89) BS02 FE 3.4.11.18 GO:0004177 ... Q8SR45 19660503
    1998 3fmu:A (1.04) BS05 FE 1.11.1.16 GO:0000302 ... O94753 N/A
    1999 3fmu:A (1.04) BS08 FE 1.11.1.16 GO:0000302 ... O94753 N/A
    2000 3fpv:A (2.2) BS01 FE ? N/A Q9RIM2 19244623
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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